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MCL coexpression mm9:204: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0731162928622474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2335268638117,0.297881225579985,0.405220956891543,0.264798593193012,0.386949193329338,0,0,0,0,0,0,0.0103791968486474,0,0,0,0,0,0,0,0.702635299034249,1.20369943382118,0,0,0,0.171686490222598,0.220789244932085,0,0,0,0,0.140841653605462,0.116346380288332,0.0538027986792206,0.0380188235580625,0,0.106932678779961,0.193893011938994,0.248187359045015,0.112145192034931,0.154458983811568,0,0,0,0,0,0,0,0,0,0.0392779901785318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078522118678911,0.0825867363219064,0,0,0,0,0.113803446464706,0.111073166435348,0.0514050548005424,0.0696031033168343,0.0817568712632069,0.156101417931449,0.147138261851992,0,0.0223851671594447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212419302822567,0.142435944479046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10509597335063,0,0,0,0,0.0672592169170953,0.0927359537809747,0.0774164737207147,0.0635717028550276,0,0.0642538110976656,0.0659019793256198,0.0691813633419548,0.00476301326726367,0,0,0,0,0.0682269141341028,0.0914641362800683,0,0,0,0,0,0,0,0,0,0,0,0,0.122271882943738,0,0,0.0663147875126409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149777533542322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0177092985551041,0.0311263812325535,0,0.0732729463329626,0,0.0740267149837504,0.0388749848471105,0.0758613932353286,0.0690411384905589,0,0.0555958525510626,0.0766073954291401,0,0,0,0.0463788279086516,0,0.0228445095543661,0.0390607415003592,0.0352754493378881,0.0729583017401753,0.0387943473699824,0.00307855423067362,0,0.0486884105045233,0.0408018333703219,0,0.0625582350728301,0.0139734719509173,0.0968441960560167,0,0.0845301845292944,0,0,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
}}
}}

Revision as of 12:38, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:25341361..25341374,-p@chr10:25341361..25341374
-
Mm9::chr10:59862497..59862520,+p2@Gm17455
Mm9::chr10:59862550..59862553,+p3@Gm17455
Mm9::chr10:59862597..59862624,+p1@Gm17455
Mm9::chr10:61656947..61656959,-p@chr10:61656947..61656959
-
Mm9::chr10:75403311..75403323,-p3@ENSMUST00000059658
p3@uc007fts.1
Mm9::chr10:75403348..75403368,-p2@ENSMUST00000059658
p2@uc007fts.1
Mm9::chr11:102749101..102749112,-p@chr11:102749101..102749112
-
Mm9::chr11:116196664..116196679,-p1@Foxj1
Mm9::chr11:32036107..32036145,-p@chr11:32036107..32036145
-
Mm9::chr11:45567111..45567116,-p@chr11:45567111..45567116
-
Mm9::chr11:68884359..68884382,+p2@Tmem107
Mm9::chr12:112646729..112646768,+p@chr12:112646729..112646768
+
Mm9::chr12:17018318..17018367,-p1@2410004P03Rik
Mm9::chr13:34129535..34129551,+p@chr13:34129535..34129551
+
Mm9::chr14:56362683..56362711,-p@chr14:56362683..56362711
-
Mm9::chr15:25682615..25682652,+p6@Myo10
Mm9::chr15:57540476..57540491,-p1@ENSMUST00000160938
Mm9::chr15:78235786..78235811,-p@chr15:78235786..78235811
-
Mm9::chr15:78236613..78236617,+p@chr15:78236613..78236617
+
Mm9::chr15:88808274..88808289,-p@chr15:88808274..88808289
-
Mm9::chr15:89209677..89209693,-p4@Odf3b
Mm9::chr15:89209695..89209731,-p1@Odf3b
Mm9::chr16:17646606..17646623,+p2@Ccdc74a
Mm9::chr16:17646685..17646713,+p@chr16:17646685..17646713
+
Mm9::chr17:35822365..35822376,-p@chr17:35822365..35822376
-
Mm9::chr17:72022595..72022611,+p1@Fam179a
Mm9::chr17:81296183..81296194,+p2@uc008drl.1
p2@uc008drm.1
Mm9::chr1:122016630..122016662,-p6@Dbi
Mm9::chr1:87791024..87791029,+p3@Itm2c
Mm9::chr4:116799381..116799402,+p2@Tctex1d4
Mm9::chr4:116799405..116799423,+p1@Tctex1d4
Mm9::chr4:135525988..135526004,-p@chr4:135525988..135526004
-
Mm9::chr4:43441943..43441960,-p@chr4:43441943..43441960
-
Mm9::chr4:43442000..43442011,-p1@Fam166b
Mm9::chr5:23889365..23889379,+p@chr5:23889365..23889379
+
Mm9::chr5:5314611..5314624,-p@chr5:5314611..5314624
-
Mm9::chr5:66842890..66842903,-p11@Apbb2
Mm9::chr6:113277237..113277258,+p2@Ogg1
Mm9::chr6:47998855..47998863,-p5@Zfp777
Mm9::chr7:148211055..148211073,+p@chr7:148211055..148211073
+
Mm9::chr8:113227136..113227143,+p@chr8:113227136..113227143
+
Mm9::chr8:96676922..96676933,+p@chr8:96676922..96676933
+
Mm9::chr8:96677795..96677811,+p@chr8:96677795..96677811
+
Mm9::chr9:103595089..103595100,-p4@Tmem108
Mm9::chr9:103595115..103595142,-p3@Tmem108


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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