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MCL coexpression mm9:1080: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0031489;myosin V binding;0.00872320892633674;171531!GO:0051010;microtubule plus-end binding;0.00872320892633674;171531!GO:0032400;melanosome localization;0.00872320892633674;171531!GO:0051875;pigment granule localization;0.00872320892633674;171531!GO:0017022;myosin binding;0.00872320892633674;171531!GO:0033059;cellular pigmentation;0.00872320892633674;171531!GO:0048770;pigment granule;0.00872320892633674;171531!GO:0042470;melanosome;0.00872320892633674;171531!GO:0015031;protein transport;0.00872320892633674;242505,171531!GO:0045184;establishment of protein localization;0.00872320892633674;242505,171531!GO:0051648;vesicle localization;0.00872320892633674;171531!GO:0008104;protein localization;0.00899445867963646;242505,171531!GO:0033036;macromolecule localization;0.00899445867963646;242505,171531!GO:0030318;melanocyte differentiation;0.00906120316010084;171531!GO:0050931;pigment cell differentiation;0.00906120316010084;171531!GO:0017137;Rab GTPase binding;0.00949375496459958;171531!GO:0051640;organelle localization;0.0126947457716614;171531!GO:0048066;pigmentation during development;0.0128768858571382;171531!GO:0008017;microtubule binding;0.0190989957619239;171531!GO:0017016;Ras GTPase binding;0.0190989957619239;171531!GO:0031267;small GTPase binding;0.0190989957619239;171531!GO:0051020;GTPase binding;0.0190989957619239;171531!GO:0015631;tubulin binding;0.0190989957619239;171531!GO:0019899;enzyme binding;0.0441657620092987;171531!GO:0006810;transport;0.0447072859655827;242505,171531!GO:0051234;establishment of localization;0.0453412544770146;242505,171531!GO:0016023;cytoplasmic membrane-bound vesicle;0.0497916355086711;171531!GO:0006605;protein targeting;0.0497916355086711;171531!GO:0051179;localization;0.0497916355086711;242505,171531!GO:0015629;actin cytoskeleton;0.0497916355086711;171531!GO:0031988;membrane-bound vesicle;0.0497916355086711;171531!
|gostat_on_MCL_coexpression=GO:0031489;myosin V binding;0.00872320892633674;171531!GO:0051010;microtubule plus-end binding;0.00872320892633674;171531!GO:0032400;melanosome localization;0.00872320892633674;171531!GO:0051875;pigment granule localization;0.00872320892633674;171531!GO:0017022;myosin binding;0.00872320892633674;171531!GO:0033059;cellular pigmentation;0.00872320892633674;171531!GO:0048770;pigment granule;0.00872320892633674;171531!GO:0042470;melanosome;0.00872320892633674;171531!GO:0015031;protein transport;0.00872320892633674;242505,171531!GO:0045184;establishment of protein localization;0.00872320892633674;242505,171531!GO:0051648;vesicle localization;0.00872320892633674;171531!GO:0008104;protein localization;0.00899445867963646;242505,171531!GO:0033036;macromolecule localization;0.00899445867963646;242505,171531!GO:0030318;melanocyte differentiation;0.00906120316010084;171531!GO:0050931;pigment cell differentiation;0.00906120316010084;171531!GO:0017137;Rab GTPase binding;0.00949375496459958;171531!GO:0051640;organelle localization;0.0126947457716614;171531!GO:0048066;pigmentation during development;0.0128768858571382;171531!GO:0008017;microtubule binding;0.0190989957619239;171531!GO:0017016;Ras GTPase binding;0.0190989957619239;171531!GO:0031267;small GTPase binding;0.0190989957619239;171531!GO:0051020;GTPase binding;0.0190989957619239;171531!GO:0015631;tubulin binding;0.0190989957619239;171531!GO:0019899;enzyme binding;0.0441657620092987;171531!GO:0006810;transport;0.0447072859655827;242505,171531!GO:0051234;establishment of localization;0.0453412544770146;242505,171531!GO:0016023;cytoplasmic membrane-bound vesicle;0.0497916355086711;171531!GO:0006605;protein targeting;0.0497916355086711;171531!GO:0051179;localization;0.0497916355086711;242505,171531!GO:0015629;actin cytoskeleton;0.0497916355086711;171531!GO:0031988;membrane-bound vesicle;0.0497916355086711;171531!
}}
}}

Revision as of 12:51, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:57786904..57786931,+p@chr11:57786904..57786931
+
Mm9::chr1:92811641..92811691,+p1@Mlph
Mm9::chr1:92811692..92811712,+p2@Mlph
Mm9::chr3:100293431..100293483,+p1@ENSMUST00000122898
Mm9::chr4:57833953..57833973,+p@chr4:57833953..57833973
+
Mm9::chr4:73364442..73364446,-p@chr4:73364442..73364446
-
Mm9::chr4:73436897..73436957,-p1@Rasef


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0031489myosin V binding0.00872320892633674
GO:0051010microtubule plus-end binding0.00872320892633674
GO:0032400melanosome localization0.00872320892633674
GO:0051875pigment granule localization0.00872320892633674
GO:0017022myosin binding0.00872320892633674
GO:0033059cellular pigmentation0.00872320892633674
GO:0048770pigment granule0.00872320892633674
GO:0042470melanosome0.00872320892633674
GO:0015031protein transport0.00872320892633674
GO:0045184establishment of protein localization0.00872320892633674
GO:0051648vesicle localization0.00872320892633674
GO:0008104protein localization0.00899445867963646
GO:0033036macromolecule localization0.00899445867963646
GO:0030318melanocyte differentiation0.00906120316010084
GO:0050931pigment cell differentiation0.00906120316010084
GO:0017137Rab GTPase binding0.00949375496459958
GO:0051640organelle localization0.0126947457716614
GO:0048066pigmentation during development0.0128768858571382
GO:0008017microtubule binding0.0190989957619239
GO:0017016Ras GTPase binding0.0190989957619239
GO:0031267small GTPase binding0.0190989957619239
GO:0051020GTPase binding0.0190989957619239
GO:0015631tubulin binding0.0190989957619239
GO:0019899enzyme binding0.0441657620092987
GO:0006810transport0.0447072859655827
GO:0051234establishment of localization0.0453412544770146
GO:0016023cytoplasmic membrane-bound vesicle0.0497916355086711
GO:0006605protein targeting0.0497916355086711
GO:0051179localization0.0497916355086711
GO:0015629actin cytoskeleton0.0497916355086711
GO:0031988membrane-bound vesicle0.0497916355086711



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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