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MCL coexpression mm9:1223: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0003947;(N-acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase activity;0.00777954308880732;14421!GO:0001574;ganglioside biosynthetic process;0.00972203131937673;14421!GO:0030259;lipid glycosylation;0.00972203131937673;14421!GO:0006688;glycosphingolipid biosynthetic process;0.00972203131937673;14421!GO:0001573;ganglioside metabolic process;0.00972203131937673;14421!GO:0009247;glycolipid biosynthetic process;0.00972203131937673;14421!GO:0019915;sequestering of lipid;0.00972203131937673;14421!GO:0006687;glycosphingolipid metabolic process;0.00972203131937673;14421!GO:0030148;sphingolipid biosynthetic process;0.0121475442708201;14421!GO:0006664;glycolipid metabolic process;0.0121475442708201;14421!GO:0008376;acetylgalactosaminyltransferase activity;0.0121475442708201;14421!GO:0006672;ceramide metabolic process;0.0121475442708201;14421!GO:0030258;lipid modification;0.0121475442708201;14421!GO:0030173;integral to Golgi membrane;0.0121475442708201;14421!GO:0046519;sphingoid metabolic process;0.0121475442708201;14421!GO:0031228;intrinsic to Golgi membrane;0.0121475442708201;14421!GO:0006665;sphingolipid metabolic process;0.0191984603543554;14421!GO:0031301;integral to organelle membrane;0.0215808346195295;14421!GO:0031300;intrinsic to organelle membrane;0.0224864167838657;14421!GO:0000139;Golgi membrane;0.0266208409274459;14421!GO:0046467;membrane lipid biosynthetic process;0.0266208409274459;14421!GO:0043413;biopolymer glycosylation;0.0278759404793481;14421!GO:0008194;UDP-glycosyltransferase activity;0.0290209928853652;14421!GO:0044431;Golgi apparatus part;0.0402455026940035;14421!GO:0003924;GTPase activity;0.0402455026940035;56055!GO:0016758;transferase activity, transferring hexosyl groups;0.0402455026940035;14421!GO:0006643;membrane lipid metabolic process;0.0433290354045682;14421!
|gostat_on_MCL_coexpression=GO:0003947;(N-acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase activity;0.00777954308880732;14421!GO:0001574;ganglioside biosynthetic process;0.00972203131937673;14421!GO:0030259;lipid glycosylation;0.00972203131937673;14421!GO:0006688;glycosphingolipid biosynthetic process;0.00972203131937673;14421!GO:0001573;ganglioside metabolic process;0.00972203131937673;14421!GO:0009247;glycolipid biosynthetic process;0.00972203131937673;14421!GO:0019915;sequestering of lipid;0.00972203131937673;14421!GO:0006687;glycosphingolipid metabolic process;0.00972203131937673;14421!GO:0030148;sphingolipid biosynthetic process;0.0121475442708201;14421!GO:0006664;glycolipid metabolic process;0.0121475442708201;14421!GO:0008376;acetylgalactosaminyltransferase activity;0.0121475442708201;14421!GO:0006672;ceramide metabolic process;0.0121475442708201;14421!GO:0030258;lipid modification;0.0121475442708201;14421!GO:0030173;integral to Golgi membrane;0.0121475442708201;14421!GO:0046519;sphingoid metabolic process;0.0121475442708201;14421!GO:0031228;intrinsic to Golgi membrane;0.0121475442708201;14421!GO:0006665;sphingolipid metabolic process;0.0191984603543554;14421!GO:0031301;integral to organelle membrane;0.0215808346195295;14421!GO:0031300;intrinsic to organelle membrane;0.0224864167838657;14421!GO:0000139;Golgi membrane;0.0266208409274459;14421!GO:0046467;membrane lipid biosynthetic process;0.0266208409274459;14421!GO:0043413;biopolymer glycosylation;0.0278759404793481;14421!GO:0008194;UDP-glycosyltransferase activity;0.0290209928853652;14421!GO:0044431;Golgi apparatus part;0.0402455026940035;14421!GO:0003924;GTPase activity;0.0402455026940035;56055!GO:0016758;transferase activity, transferring hexosyl groups;0.0402455026940035;14421!GO:0006643;membrane lipid metabolic process;0.0433290354045682;14421!
}}
}}

Revision as of 12:53, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:126602348..126602359,+p11@B4galnt1
Mm9::chr10:126602369..126602383,+p5@B4galnt1
Mm9::chr10:126602843..126602860,+p7@B4galnt1
Mm9::chr10:126602861..126602878,+p6@B4galnt1
Mm9::chr10:126602881..126602956,+p2@B4galnt1
Mm9::chr17:46300102..46300132,+p6@Gtpbp2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0003947(N-acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase activity0.00777954308880732
GO:0001574ganglioside biosynthetic process0.00972203131937673
GO:0030259lipid glycosylation0.00972203131937673
GO:0006688glycosphingolipid biosynthetic process0.00972203131937673
GO:0001573ganglioside metabolic process0.00972203131937673
GO:0009247glycolipid biosynthetic process0.00972203131937673
GO:0019915sequestering of lipid0.00972203131937673
GO:0006687glycosphingolipid metabolic process0.00972203131937673
GO:0030148sphingolipid biosynthetic process0.0121475442708201
GO:0006664glycolipid metabolic process0.0121475442708201
GO:0008376acetylgalactosaminyltransferase activity0.0121475442708201
GO:0006672ceramide metabolic process0.0121475442708201
GO:0030258lipid modification0.0121475442708201
GO:0030173integral to Golgi membrane0.0121475442708201
GO:0046519sphingoid metabolic process0.0121475442708201
GO:0031228intrinsic to Golgi membrane0.0121475442708201
GO:0006665sphingolipid metabolic process0.0191984603543554
GO:0031301integral to organelle membrane0.0215808346195295
GO:0031300intrinsic to organelle membrane0.0224864167838657
GO:0000139Golgi membrane0.0266208409274459
GO:0046467membrane lipid biosynthetic process0.0266208409274459
GO:0043413biopolymer glycosylation0.0278759404793481
GO:0008194UDP-glycosyltransferase activity0.0290209928853652
GO:0044431Golgi apparatus part0.0402455026940035
GO:0003924GTPase activity0.0402455026940035
GO:0016758transferase activity, transferring hexosyl groups0.0402455026940035
GO:0006643membrane lipid metabolic process0.0433290354045682



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}