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MCL coexpression mm9:2695: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0004499;flavin-containing monooxygenase activity;0.0106831753684326;55990!GO:0016709;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen;0.0206541390456364;55990!GO:0006800;oxygen and reactive oxygen species metabolic process;0.0206541390456364;55990!GO:0050660;FAD binding;0.0315153673368761;55990!GO:0050662;coenzyme binding;0.0358954692379335;55990!GO:0004497;monooxygenase activity;0.0358954692379335;55990!GO:0016705;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;0.0358954692379335;55990!GO:0005792;microsome;0.0358954692379335;55990!GO:0042598;vesicular fraction;0.0358954692379335;55990!GO:0048037;cofactor binding;0.0358954692379335;55990!
|gostat_on_MCL_coexpression=GO:0004499;flavin-containing monooxygenase activity;0.0106831753684326;55990!GO:0016709;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen;0.0206541390456364;55990!GO:0006800;oxygen and reactive oxygen species metabolic process;0.0206541390456364;55990!GO:0050660;FAD binding;0.0315153673368761;55990!GO:0050662;coenzyme binding;0.0358954692379335;55990!GO:0004497;monooxygenase activity;0.0358954692379335;55990!GO:0016705;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;0.0358954692379335;55990!GO:0005792;microsome;0.0358954692379335;55990!GO:0042598;vesicular fraction;0.0358954692379335;55990!GO:0048037;cofactor binding;0.0358954692379335;55990!
}}
}}

Revision as of 13:17, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:61431367..61431383,+p@chr11:61431367..61431383
+
Mm9::chr1:164805514..164805524,-p@chr1:164805514..164805524
-
Mm9::chr1:164828842..164828859,-p1@Fmo2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0004499flavin-containing monooxygenase activity0.0106831753684326
GO:0016709oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen0.0206541390456364
GO:0006800oxygen and reactive oxygen species metabolic process0.0206541390456364
GO:0050660FAD binding0.0315153673368761
GO:0050662coenzyme binding0.0358954692379335
GO:0004497monooxygenase activity0.0358954692379335
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen0.0358954692379335
GO:0005792microsome0.0358954692379335
GO:0042598vesicular fraction0.0358954692379335
GO:0048037cofactor binding0.0358954692379335



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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