Personal tools

MCL coexpression mm9:3431: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
|coexpression_dpi_cluster_scores_mean=0.0930492380482285,0.121558542979812,-0.0254768643902302,0.551575318617023,0.334660625505082,0.0754802023364295,0.420211998351531,0.210694688919074,0.291520741868113,0.318082818400386,0.374051399481567,0.272820894248041,0.389441434155774,0.302051584957923,0.0161451051414205,0.195513371383172,0.371180767069576,0.416255942591259,0.386176675279985,0.32901791642815,0.030158690210554,0.0144499252818722,0.456441420047299,0.714818955029037,0.662248048504009,0.119522847657357,0.154435560950004,0.254655253582781,0.736896959092712,0.107991320269915,0.158359107506051,0.0456984371140025,-0.0254768643902302,-0.0254768643902302,0.0405315747004798,0.0746474878030625,0.0014189926340517,0.206954245117409,0.110754069480499,0.096422620309742,0.0414944029515527,-0.0254768643902302,-0.0254768643902302,-0.0254768643902302,0.0129635188653673,0.0820178132565973,-0.0254768643902302,0.00307522162782157,0.00327250358376006,0.0220759379534061,0.0292232802611434,-0.0254768643902302,0.411563844300723,0.141820572847915,0.335844021929497,0.158851038383628,0.040105531378096,0.0771176406522603,0.00119606662793357,-0.0254768643902302,-0.0254768643902302,-0.0254768643902302,-0.0254768643902302,-0.0254768643902302,-0.0254768643902302,-0.0254768643902302,0.0124597154782655,-0.0254768643902302,0.0137316338344661,-0.0254768643902302,0.0453388933567577,-0.0254768643902302,0.0034127699706125,-0.0254768643902302,-0.0122270920268006,0.16327279304201,-0.0254768643902302,0.0764142914052067,0.0438625285956627,-0.0254768643902302,-0.0128039232042094,-0.0254768643902302,0.0626027783030863,-0.0254768643902302,0.0497326015962672,-0.0254768643902302,0.0716148915196282,-0.000733219337340703,0.511163802492815,0.464542990804451,0.356186136202569,0.299165819181114,0.0496237593360977,-0.0254768643902302,0.0469981660551903,0.0978473195930533,0.0293849911260422,-0.00269500951720223,0.51385568032974,0.696647381243311,0.0463777522590425,0.322616334691733,-0.0254768643902302,-0.0254768643902302,0.839715175298335,0.943708367763373,0.972330367612641,-0.00982457415968674,0.00785790308422546,-0.0254768643902302,-0.0254768643902302,-0.0254768643902302,-0.0254768643902302,-0.0051533117389702,0.0182640417034874,0.0334773241297897,0.0326777802685316,0.0112964234663125,-0.0254768643902302,-0.00377053769539427,0.0034095657357282,-0.0254768643902302,-0.0254768643902302,0.0867512908516613,0.00205204771707194,-0.0254768643902302,0.102929934575048,0.0886512276230365,0.0924801172728095,0.0124576177646718,-0.0254768643902302,-0.0083418461233827,-0.00227582995128542,-0.0254768643902302,0.0446617844468607,-0.00371143434372687,0.0271568617045229,-0.0254768643902302,0.033744816513192,0.00217111319309105,-0.00776862071385977,0.00447998381413893,0.104538480891186,0.0126611415889677,0.00141179624975701,-0.00802590398686507,0.0520692712630219,-0.0254768643902302,0.0264167696687978,0.0209618281072037,0.0181715657143607,0.00321428021960835,0.0100387722513029,0.01778017788765,0.00161275078629054,0.00080033388973896,0.13862009178637,0.417257262758154,-0.0254768643902302,0.0618883684849887,0.0607022910283518,-0.00150858166070405,0.101736910543417,0.000526002527086932,-0.0254768643902302,-0.0254768643902302,-0.0254768643902302,-0.0094895551843337,-0.00342292671535617,-0.0034717118760286,0.006037551344901,0.0116554492412678,0.00325635280740068,-0.0254768643902302,0.0785434295849,0.0276506846850914,0.0158525914988167,0.0084904207406519,0.00251113291566756,0.00475451208600107,0.0522532203653625,0.0235802273339233,0.00359164913476777,0.0211968272886161,0.0307409144421708,-0.0254768643902302,-0.0254768643902302,-0.0254768643902302,0.0260930378771087,-0.0254768643902302,0.0028507611631881,0.0230547812039163,-0.0254768643902302,-0.0098161767146572,0.22152924513533,0.0508192044408948,-0.0254768643902302,-0.0064740900836706,0.0142951933961483,-0.0055454044137183,-0.00436590391330727,0.0547380783959163,0.0496942370071664,0.0749439418574587,-0.0254768643902302,0.0491589834448197,0.043337389941357,0.0315071433500412,0.0073612129451005,0.0403193727866927,-0.0254768643902302,0.00964339102966313,-0.0254768643902302,0.0203227105493438,-0.0254768643902302,0.0071248302708488,0.0368600076828797,-0.0254768643902302,-0.000934235459879293,0.039682265314263,-0.0036213191158866,-0.0254768643902302,0.0050424749616718,0.0752306386985857,0.052537798807147,0.0480280624009479,0.0141948054660305,-0.0254768643902302,-0.004058927357675,-0.00350953794835693,-0.0254768643902302,0.0113075850894336,0.624450741185704,0.676910674398238,-0.0254768643902302,-0.0254768643902302,0.0529932092281789,0.0702848292081363,-0.0254768643902302,0.0397015713831286,0.12830841458705,0.134481448939697,0.0644925368262967,0.11934447733353,0.0667685493652703,0.0394678702080513,0.0237290712686031,0.123727386676327,0.0227443989550801,-0.0254768643902302,0.0258780623220436,-0.00175370574033327,-0.0036310309381797,-0.0033719352193499,-0.0254768643902302,-0.0254768643902302,-0.0254768643902302,0.0208565415371065,-0.0254768643902302,0.04390235099163,0.00779929359040887,-0.0254768643902302,0.0186627885315698,-0.0254768643902302,-0.0254768643902302,0.07711844223956,0.0497019709520747,0.0190491107571158,-0.0254768643902302,-0.0254768643902302,0.080223636440075,0.0186884263675021,-0.0034242728983608,-0.0254768643902302,0.0302309060464996,0.0968754986789587,-0.0254768643902302,-0.0033823576906165,-0.0254768643902302,0.019235822487485,-0.0254768643902302,0.015619876228006,-0.0254768643902302,0.0237725974035324,-0.0254768643902302,-0.0254768643902302,-0.0254768643902302,-0.00049315913750531,-0.0254768643902302,0.00434763173666003,0.0592503465739311,0.0870444455726088,0.0880500411141675,-0.0254768643902302,0.0667466360786452,0.0239173469591651,0.0151542158473029,0.025099906533538,0.0474634719012138,-0.00716221367124753,-0.0254768643902302,0.00818158848724713,-0.007833384252378,-0.0254768643902302,-0.0254768643902302,-0.00530512210744907,-0.0254768643902302,-0.0254768643902302,0.0096934137173982,-0.0254768643902302,0.0050453157332955,0.0080269410271204,0.0252285480149403,0.00584851879759756,0.0111651291333371,-0.0254768643902302,0.00124527431169721,0.0134070886074051,-0.00779419365640013,-0.0254768643902302,0.0229595187301254,-0.00904559634466283,0.0276187927216814,0.0267514529980691,0.0149609568134014,0.0127799961470479,0.0221771881923469,0,-0.0094750945541068,0.0496426999618533,0.467515330240529,0.424809199540945,0.601946531163502,0.0218171456923738,-0.000576748258031367,0.0197055025826557,0.0641640123919817,-0.0254768643902302,-0.0254768643902302,-0.0254768643902302,-0.0254768643902302,0.431676129699147,0.0500635267626713,-0.0254768643902302,0.172888743528223,0.0283445343638425,0.0286258614598257,-0.0254768643902302,-0.0111817272043654,0.0594570366855833,-0.0254768643902302,0.006025939993259,0.0296208049684909,-0.00104543203728986,0.0035760966912497,-0.0254768643902302,-0.0254768643902302,0.00713850586901503,-0.0254768643902302,0.0458761281200835,-0.0254768643902302,-0.0080340419858784,0.0191538892355409,-0.0254768643902302,0.00469951802377433,5.89340861498617e-05,0.0244768411982531,0.0661547860419277,-0.0254768643902302,-0.00182620027242202,-0.0254768643902302,0.0138143765540044,-0.0124566172234438,-0.0028436448465138,-0.0254768643902302,0.0357212059728133,-0.0070423852732658,-0.0254768643902302,0.0185995621580348,0.000555603268873253,-0.0254768643902302,-0.0254768643902302,0.021758035808175,0.0068045342951087,-0.0254768643902302,0.0262757049440104,-0.000137901670566691,-0.0254768643902302,-0.0254768643902302
|coexpression_dpi_cluster_scores_mean=0.0930492380482285,0.121558542979812,-0.0254768643902302,0.551575318617023,0.334660625505082,0.0754802023364295,0.420211998351531,0.210694688919074,0.291520741868113,0.318082818400386,0.374051399481567,0.272820894248041,0.389441434155774,0.302051584957923,0.0161451051414205,0.195513371383172,0.371180767069576,0.416255942591259,0.386176675279985,0.32901791642815,0.030158690210554,0.0144499252818722,0.456441420047299,0.714818955029037,0.662248048504009,0.119522847657357,0.154435560950004,0.254655253582781,0.736896959092712,0.107991320269915,0.158359107506051,0.0456984371140025,-0.0254768643902302,-0.0254768643902302,0.0405315747004798,0.0746474878030625,0.0014189926340517,0.206954245117409,0.110754069480499,0.096422620309742,0.0414944029515527,-0.0254768643902302,-0.0254768643902302,-0.0254768643902302,0.0129635188653673,0.0820178132565973,-0.0254768643902302,0.00307522162782157,0.00327250358376006,0.0220759379534061,0.0292232802611434,-0.0254768643902302,0.411563844300723,0.141820572847915,0.335844021929497,0.158851038383628,0.040105531378096,0.0771176406522603,0.00119606662793357,-0.0254768643902302,-0.0254768643902302,-0.0254768643902302,-0.0254768643902302,-0.0254768643902302,-0.0254768643902302,-0.0254768643902302,0.0124597154782655,-0.0254768643902302,0.0137316338344661,-0.0254768643902302,0.0453388933567577,-0.0254768643902302,0.0034127699706125,-0.0254768643902302,-0.0122270920268006,0.16327279304201,-0.0254768643902302,0.0764142914052067,0.0438625285956627,-0.0254768643902302,-0.0128039232042094,-0.0254768643902302,0.0626027783030863,-0.0254768643902302,0.0497326015962672,-0.0254768643902302,0.0716148915196282,-0.000733219337340703,0.511163802492815,0.464542990804451,0.356186136202569,0.299165819181114,0.0496237593360977,-0.0254768643902302,0.0469981660551903,0.0978473195930533,0.0293849911260422,-0.00269500951720223,0.51385568032974,0.696647381243311,0.0463777522590425,0.322616334691733,-0.0254768643902302,-0.0254768643902302,0.839715175298335,0.943708367763373,0.972330367612641,-0.00982457415968674,0.00785790308422546,-0.0254768643902302,-0.0254768643902302,-0.0254768643902302,-0.0254768643902302,-0.0051533117389702,0.0182640417034874,0.0334773241297897,0.0326777802685316,0.0112964234663125,-0.0254768643902302,-0.00377053769539427,0.0034095657357282,-0.0254768643902302,-0.0254768643902302,0.0867512908516613,0.00205204771707194,-0.0254768643902302,0.102929934575048,0.0886512276230365,0.0924801172728095,0.0124576177646718,-0.0254768643902302,-0.0083418461233827,-0.00227582995128542,-0.0254768643902302,0.0446617844468607,-0.00371143434372687,0.0271568617045229,-0.0254768643902302,0.033744816513192,0.00217111319309105,-0.00776862071385977,0.00447998381413893,0.104538480891186,0.0126611415889677,0.00141179624975701,-0.00802590398686507,0.0520692712630219,-0.0254768643902302,0.0264167696687978,0.0209618281072037,0.0181715657143607,0.00321428021960835,0.0100387722513029,0.01778017788765,0.00161275078629054,0.00080033388973896,0.13862009178637,0.417257262758154,-0.0254768643902302,0.0618883684849887,0.0607022910283518,-0.00150858166070405,0.101736910543417,0.000526002527086932,-0.0254768643902302,-0.0254768643902302,-0.0254768643902302,-0.0094895551843337,-0.00342292671535617,-0.0034717118760286,0.006037551344901,0.0116554492412678,0.00325635280740068,-0.0254768643902302,0.0785434295849,0.0276506846850914,0.0158525914988167,0.0084904207406519,0.00251113291566756,0.00475451208600107,0.0522532203653625,0.0235802273339233,0.00359164913476777,0.0211968272886161,0.0307409144421708,-0.0254768643902302,-0.0254768643902302,-0.0254768643902302,0.0260930378771087,-0.0254768643902302,0.0028507611631881,0.0230547812039163,-0.0254768643902302,-0.0098161767146572,0.22152924513533,0.0508192044408948,-0.0254768643902302,-0.0064740900836706,0.0142951933961483,-0.0055454044137183,-0.00436590391330727,0.0547380783959163,0.0496942370071664,0.0749439418574587,-0.0254768643902302,0.0491589834448197,0.043337389941357,0.0315071433500412,0.0073612129451005,0.0403193727866927,-0.0254768643902302,0.00964339102966313,-0.0254768643902302,0.0203227105493438,-0.0254768643902302,0.0071248302708488,0.0368600076828797,-0.0254768643902302,-0.000934235459879293,0.039682265314263,-0.0036213191158866,-0.0254768643902302,0.0050424749616718,0.0752306386985857,0.052537798807147,0.0480280624009479,0.0141948054660305,-0.0254768643902302,-0.004058927357675,-0.00350953794835693,-0.0254768643902302,0.0113075850894336,0.624450741185704,0.676910674398238,-0.0254768643902302,-0.0254768643902302,0.0529932092281789,0.0702848292081363,-0.0254768643902302,0.0397015713831286,0.12830841458705,0.134481448939697,0.0644925368262967,0.11934447733353,0.0667685493652703,0.0394678702080513,0.0237290712686031,0.123727386676327,0.0227443989550801,-0.0254768643902302,0.0258780623220436,-0.00175370574033327,-0.0036310309381797,-0.0033719352193499,-0.0254768643902302,-0.0254768643902302,-0.0254768643902302,0.0208565415371065,-0.0254768643902302,0.04390235099163,0.00779929359040887,-0.0254768643902302,0.0186627885315698,-0.0254768643902302,-0.0254768643902302,0.07711844223956,0.0497019709520747,0.0190491107571158,-0.0254768643902302,-0.0254768643902302,0.080223636440075,0.0186884263675021,-0.0034242728983608,-0.0254768643902302,0.0302309060464996,0.0968754986789587,-0.0254768643902302,-0.0033823576906165,-0.0254768643902302,0.019235822487485,-0.0254768643902302,0.015619876228006,-0.0254768643902302,0.0237725974035324,-0.0254768643902302,-0.0254768643902302,-0.0254768643902302,-0.00049315913750531,-0.0254768643902302,0.00434763173666003,0.0592503465739311,0.0870444455726088,0.0880500411141675,-0.0254768643902302,0.0667466360786452,0.0239173469591651,0.0151542158473029,0.025099906533538,0.0474634719012138,-0.00716221367124753,-0.0254768643902302,0.00818158848724713,-0.007833384252378,-0.0254768643902302,-0.0254768643902302,-0.00530512210744907,-0.0254768643902302,-0.0254768643902302,0.0096934137173982,-0.0254768643902302,0.0050453157332955,0.0080269410271204,0.0252285480149403,0.00584851879759756,0.0111651291333371,-0.0254768643902302,0.00124527431169721,0.0134070886074051,-0.00779419365640013,-0.0254768643902302,0.0229595187301254,-0.00904559634466283,0.0276187927216814,0.0267514529980691,0.0149609568134014,0.0127799961470479,0.0221771881923469,0,-0.0094750945541068,0.0496426999618533,0.467515330240529,0.424809199540945,0.601946531163502,0.0218171456923738,-0.000576748258031367,0.0197055025826557,0.0641640123919817,-0.0254768643902302,-0.0254768643902302,-0.0254768643902302,-0.0254768643902302,0.431676129699147,0.0500635267626713,-0.0254768643902302,0.172888743528223,0.0283445343638425,0.0286258614598257,-0.0254768643902302,-0.0111817272043654,0.0594570366855833,-0.0254768643902302,0.006025939993259,0.0296208049684909,-0.00104543203728986,0.0035760966912497,-0.0254768643902302,-0.0254768643902302,0.00713850586901503,-0.0254768643902302,0.0458761281200835,-0.0254768643902302,-0.0080340419858784,0.0191538892355409,-0.0254768643902302,0.00469951802377433,5.89340861498617e-05,0.0244768411982531,0.0661547860419277,-0.0254768643902302,-0.00182620027242202,-0.0254768643902302,0.0138143765540044,-0.0124566172234438,-0.0028436448465138,-0.0254768643902302,0.0357212059728133,-0.0070423852732658,-0.0254768643902302,0.0185995621580348,0.000555603268873253,-0.0254768643902302,-0.0254768643902302,0.021758035808175,0.0068045342951087,-0.0254768643902302,0.0262757049440104,-0.000137901670566691,-0.0254768643902302,-0.0254768643902302
|coexpression_dpi_cluster_scores_median=0.120671864823979,0.0535734392114618,0,0.589110112181116,0.301418832116713,0.125727960712818,0.344397571055202,0.104409900944025,0.153011413271348,0.166764232955903,0.192168400566477,0.308999144909461,0.265677131594267,0.157487597443535,0,0.18122424351136,0.380052651166226,0.27803295007863,0.292211982742496,0.266885070731364,0.0222580721707354,0.00223712275077699,0.525148260804501,0.712633120067587,0.710063778435048,0,0.193438044839661,0.15562217221269,0.626381241572423,0.0211841870064616,0.199323364673731,0,0,0,0,0.124657208673588,0,0.0754084310650512,0,0.106418633879268,0,0,0,0,0,0,0,0,0,0,0.0307701622963414,0,0.337355066519133,0,0.302824565438938,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206693892977669,0,0,0,0,0,0,0,0,0.0617533076901792,0,0.0578074284787346,0,0.467508928148933,0.297197922879529,0.389045962020779,0.269611904680974,0,0,0,0,0.0310808487091348,0,0.450018352294986,0.621182117759415,0.107781924973909,0.282125683313758,0,0,0.708703803028498,0.88009049046542,0.933632366321358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0932921651944173,0,0.140259928189304,0,0,0,0,0,0,0,0.0393523013768635,0,0,0,0,0,0.0719048733411253,0,0,0,0.0388988969149198,0,0,0,0,0,0,0,0,0,0,0.359216700371906,0,0,0.0906066110677861,0,0.0922800703916586,0,0,0,0,0,0,0,0,0,0,0,0,0.040414101097132,0,0,0,0,0.0526429550379996,0,0,0,0,0,0,0,0.000924260230317844,0,0,0,0,0,0,0.00407010610729756,0,0,0,0,0,0,0.0363260589254042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0666677134821289,0,0,0,0,0,0,0.603774852447547,0.629759554767953,0,0,0.0646640766951323,0,0,0.0213370604893476,0,0.143151860801801,0,0.0930603692915911,0,0,0,0.111348509539896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108834040427167,0,0,0,0,0.137218949571854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127090816446242,0.107177024667156,0.0562185712770556,0,0.0637715600712905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0384802741953815,0.0129871359509162,0,0,0,0,0,0.507836926027523,0.446269476585627,0.655673953147729,0,0,0,0,0,0,0,0,0.343009031749163,0,0,0.224020645200257,0,0,0,0,0,0,0,0.00621591086739105,0,0,0,0,0,0,0.0625830338445411,0,0,0.0242538736058389,0,0,0,0,0,0,0,0,0.0589368614163519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
}}
}}

Revision as of 13:29, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr3:92494924..92494930,+p@chr3:92494924..92494930
+
Mm9::chr7:127767748..127767760,+p@chr7:127767748..127767760
+
Mm9::chr7:152494247..152494249,+p@chr7:152494247..152494249
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:3431&oldid=2152717"