Personal tools

MCL coexpression mm9:3496: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
|coexpression_dpi_cluster_scores_mean=0.000213530068073472,1.39260979487626,1.31653050203758,1.19836797196152,1.24884506918852,1.08793268943384,0.973291548943871,0.0645131329641362,0.140904558071277,0.208301997228219,-0.0485743899190476,0.0310607412585312,0.172192101689324,0.059801399974885,0.517795882907833,0.504957848585129,0.005325361625694,0.415370812757228,0.355346868617313,0.314691567141649,0.289977107288585,-0.071453632081939,-0.0378590022600023,0.968235881338351,0.971514764412079,1.2890939711739,1.17139116044382,1.29906962342364,0.837948736875356,0.636652172679456,1.19606240371846,-0.00027833057770633,-0.071453632081939,-0.071453632081939,0.142465508893882,0.247282691280404,0.203883909741306,0.414919496430362,0.313736489117034,0.347918486642867,0.591964393632975,0.538235845973957,0.3652349196831,-0.0371212375981444,-0.071453632081939,-0.071453632081939,0.13384781660314,-0.071453632081939,-0.0187292452801334,-0.0457334100317043,0.153418475295268,-0.071453632081939,0.268533367101829,0.188076004043686,0.204757806893048,0.0482572614869213,-0.00587123631361283,0.192798549834595,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.0292102490013901,0.338785863013613,0.37983137538761,0.459492203295459,0.497800324768231,-0.0335170522134433,-0.0243854360205047,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.0425639977210963,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.0540573973787897,-0.0326715053191616,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.00240444408931551,-0.071453632081939,-0.0351815046424347,-0.071453632081939,0.0540170593223,-0.0418724445529077,0.68895190764496,0.46457263164392,1.44198868586759,0.271410408085699,0.517660330022645,0.321268857631223,0.286457069152418,-0.071453632081939,-0.038021372310773,-0.071453632081939,-0.0355263237573027,-0.071453632081939,-0.071453632081939,-0.071453632081939,0.231164182259715,0.148222209551507,0.248886247552988,0.762968901225711,0.450517306796529,0.0407866710912124,-0.0482944108951963,-0.0329761019770073,-0.0414128387827797,0.120076409262324,0.0406272251402766,0.0926176273153163,0.130023379771185,0.126371652643681,0.265034850592648,0.0224898183915633,0.109831918515695,0.124820515101286,0.718190620441515,-0.034278667928395,-0.0208037078296751,1.05824152650493,0.00696245916443893,0.0775839573199157,0.153246707471277,-0.071453632081939,-0.0169173843972033,-0.0543186138150913,-0.0482525976429943,-0.071453632081939,-0.0441233899567603,-0.0496882020354357,-0.00794606479930427,0.0873437912546121,0.0468138117253227,0.277267419656672,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.0511323216065303,-0.0270792820439481,-0.0384308735017947,-0.058487333110299,0.045010795296155,-0.019559998022911,-0.0463800988276267,-0.0245274510051958,-0.0427624874721003,-0.035937995440406,-0.071453632081939,-0.00185261586041645,-0.0451764338019699,0.122144428952672,0.135242088999932,0.259174475760653,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.0234150174768161,-0.029916084070781,-0.041187335797352,0.0140243492758964,0.0150264822115605,-0.071453632081939,-0.071453632081939,-0.010908300062808,-0.0517001656295401,0.225133221369629,0.0780431023500303,-0.071453632081939,-0.0325054006593314,1.41425265355771,1.31977149929961,-0.0434656347760413,-0.071453632081939,0.0062764526736538,0.0266605513663682,0.252485291753425,0.621526730228021,0.903782853230862,0.48738521862181,0.68491647523723,0.713457630144226,0.778158670797975,1.16453966770969,0.93123119410009,0.857711950797836,-0.0211698028693152,-0.00603922037822323,0.0993591002221497,-0.017786499229947,0.0997999105508871,0.0742203599567561,-0.0228049435246327,0.00154959370181323,0.135127804520526,0.068611534395179,0.469798706623749,-0.0491158957758937,0.0385040176202472,-0.042091231685411,0.0145543912390998,-0.0401757070613743,0.0958990181929841,0.252415297029273,0.174013222796674,0.2499185128621,0.401100748513036,0.262642741395527,0.263459215692054,0.376889442333786,0.517020643774995,0.4363901353865,0.292665631973448,-0.0249340131869273,-0.071453632081939,-0.0487565556318522,-0.071453632081939,-0.0266141541372089,0.150670536217981,0.0468703878431547,0.0205141391387944,0.031258726696809,0.0348357228939792,0.129888961979719,0.130566163191461,0.0297947868403959,0.766418629569934,1.25753355457934,0.0597552285605863,0.105211419235919,-0.0498989398502283,-0.071453632081939,-0.071453632081939,-0.0122803918610772,-0.071453632081939,0.0239809417859283,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.0343374622353067,0.0128772517215728,-0.071453632081939,0.142355190568347,0.133027387950688,0.0848374079619134,0.415575260476017,0.050839907270221,0.0267842429819224,-0.0332139999729962,-0.071453632081939,0.00346036803781933,0.0633298846029483,0.473074801712922,0.103401141312743,-0.071453632081939,0.0250842134867759,-0.071453632081939,0.0311416745478513,0.0529581922201227,-0.071453632081939,-0.071453632081939,-0.0433405519497583,-0.0478196368942803,-0.071453632081939,-0.071453632081939,0.0358695466655762,0.280155929797147,0.234967634400169,0.0777935706873119,0.0139944977573464,0.0596919305684204,0.0053472323559562,0.003852701533141,-0.071453632081939,0.950163261979374,-0.071453632081939,0.390127866495542,-0.0214294278863844,0.309260143671431,0.162289961504209,0.302920723612897,0.421981074673839,0.173738139987723,0.23844140790136,0.327372312985,1.2518887139788,-0.0104075264899313,-0.0178663369413164,-0.0134465995991183,0.0945945486941502,0.361484906499747,0.420669877312992,0.67971151575873,0.938837667383348,0.545857940826103,0.201553282684888,-0.071453632081939,-0.0512818897991579,-0.0492880287198907,-0.0200080275111938,-0.0538684930281247,0.0032892132118986,0.0314201620194753,0.0188496440080377,-0.0570179677122747,-0.00880286570628357,-0.071453632081939,0.314442370775026,-0.0447314933800117,-0.00747342114813143,0.165038167023217,0.034160464954131,0.183821838347483,0.155471327845224,0.184177257797139,0.199822513603959,0.150614271093773,0.156844848656947,0.332152198548975,0.229565552918396,0.243516326143144,0.148697615692472,-0.071453632081939,-0.071453632081939,-0.071453632081939,0.0519735269126351,0.40382392291138,0.693115499615393,0.640482502792673,0.288822821596635,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.0228451534403254,-0.0289269447490726,-0.071453632081939,-0.0439047974025783,-0.0470221997289987,0.0802673794047302,-0.00178471676163151,0.0480912503148737,-0.0388382618226937,0.0206191971175921,-0.000100639571624992,-0.009695795518185,0.0401449484545451,0.00972325063432363,-0.071453632081939,-0.00953113140760853,0.0263004428932895,-0.071453632081939,0.00839582461488377,0.0736236385057834,-0.0274790367235365,-0.071453632081939,-0.0345126658864147,-0.0121812172585579,0.0151420283737642,-0.0263186662353951,0.0797283090019217,-0.0530191529649747,-0.00697280426626957,-0.0273772055336739,0.034035677874086,-0.071453632081939,0.0115867293350697,-0.0459181502781937,-0.071453632081939,0.116360535892711,0.150944070263876,-0.00579780658614293,0.0938700470253859,0.0138886254347469
|coexpression_dpi_cluster_scores_mean=0.000213530068073472,1.39260979487626,1.31653050203758,1.19836797196152,1.24884506918852,1.08793268943384,0.973291548943871,0.0645131329641362,0.140904558071277,0.208301997228219,-0.0485743899190476,0.0310607412585312,0.172192101689324,0.059801399974885,0.517795882907833,0.504957848585129,0.005325361625694,0.415370812757228,0.355346868617313,0.314691567141649,0.289977107288585,-0.071453632081939,-0.0378590022600023,0.968235881338351,0.971514764412079,1.2890939711739,1.17139116044382,1.29906962342364,0.837948736875356,0.636652172679456,1.19606240371846,-0.00027833057770633,-0.071453632081939,-0.071453632081939,0.142465508893882,0.247282691280404,0.203883909741306,0.414919496430362,0.313736489117034,0.347918486642867,0.591964393632975,0.538235845973957,0.3652349196831,-0.0371212375981444,-0.071453632081939,-0.071453632081939,0.13384781660314,-0.071453632081939,-0.0187292452801334,-0.0457334100317043,0.153418475295268,-0.071453632081939,0.268533367101829,0.188076004043686,0.204757806893048,0.0482572614869213,-0.00587123631361283,0.192798549834595,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.0292102490013901,0.338785863013613,0.37983137538761,0.459492203295459,0.497800324768231,-0.0335170522134433,-0.0243854360205047,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.0425639977210963,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.0540573973787897,-0.0326715053191616,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.00240444408931551,-0.071453632081939,-0.0351815046424347,-0.071453632081939,0.0540170593223,-0.0418724445529077,0.68895190764496,0.46457263164392,1.44198868586759,0.271410408085699,0.517660330022645,0.321268857631223,0.286457069152418,-0.071453632081939,-0.038021372310773,-0.071453632081939,-0.0355263237573027,-0.071453632081939,-0.071453632081939,-0.071453632081939,0.231164182259715,0.148222209551507,0.248886247552988,0.762968901225711,0.450517306796529,0.0407866710912124,-0.0482944108951963,-0.0329761019770073,-0.0414128387827797,0.120076409262324,0.0406272251402766,0.0926176273153163,0.130023379771185,0.126371652643681,0.265034850592648,0.0224898183915633,0.109831918515695,0.124820515101286,0.718190620441515,-0.034278667928395,-0.0208037078296751,1.05824152650493,0.00696245916443893,0.0775839573199157,0.153246707471277,-0.071453632081939,-0.0169173843972033,-0.0543186138150913,-0.0482525976429943,-0.071453632081939,-0.0441233899567603,-0.0496882020354357,-0.00794606479930427,0.0873437912546121,0.0468138117253227,0.277267419656672,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.0511323216065303,-0.0270792820439481,-0.0384308735017947,-0.058487333110299,0.045010795296155,-0.019559998022911,-0.0463800988276267,-0.0245274510051958,-0.0427624874721003,-0.035937995440406,-0.071453632081939,-0.00185261586041645,-0.0451764338019699,0.122144428952672,0.135242088999932,0.259174475760653,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.0234150174768161,-0.029916084070781,-0.041187335797352,0.0140243492758964,0.0150264822115605,-0.071453632081939,-0.071453632081939,-0.010908300062808,-0.0517001656295401,0.225133221369629,0.0780431023500303,-0.071453632081939,-0.0325054006593314,1.41425265355771,1.31977149929961,-0.0434656347760413,-0.071453632081939,0.0062764526736538,0.0266605513663682,0.252485291753425,0.621526730228021,0.903782853230862,0.48738521862181,0.68491647523723,0.713457630144226,0.778158670797975,1.16453966770969,0.93123119410009,0.857711950797836,-0.0211698028693152,-0.00603922037822323,0.0993591002221497,-0.017786499229947,0.0997999105508871,0.0742203599567561,-0.0228049435246327,0.00154959370181323,0.135127804520526,0.068611534395179,0.469798706623749,-0.0491158957758937,0.0385040176202472,-0.042091231685411,0.0145543912390998,-0.0401757070613743,0.0958990181929841,0.252415297029273,0.174013222796674,0.2499185128621,0.401100748513036,0.262642741395527,0.263459215692054,0.376889442333786,0.517020643774995,0.4363901353865,0.292665631973448,-0.0249340131869273,-0.071453632081939,-0.0487565556318522,-0.071453632081939,-0.0266141541372089,0.150670536217981,0.0468703878431547,0.0205141391387944,0.031258726696809,0.0348357228939792,0.129888961979719,0.130566163191461,0.0297947868403959,0.766418629569934,1.25753355457934,0.0597552285605863,0.105211419235919,-0.0498989398502283,-0.071453632081939,-0.071453632081939,-0.0122803918610772,-0.071453632081939,0.0239809417859283,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.0343374622353067,0.0128772517215728,-0.071453632081939,0.142355190568347,0.133027387950688,0.0848374079619134,0.415575260476017,0.050839907270221,0.0267842429819224,-0.0332139999729962,-0.071453632081939,0.00346036803781933,0.0633298846029483,0.473074801712922,0.103401141312743,-0.071453632081939,0.0250842134867759,-0.071453632081939,0.0311416745478513,0.0529581922201227,-0.071453632081939,-0.071453632081939,-0.0433405519497583,-0.0478196368942803,-0.071453632081939,-0.071453632081939,0.0358695466655762,0.280155929797147,0.234967634400169,0.0777935706873119,0.0139944977573464,0.0596919305684204,0.0053472323559562,0.003852701533141,-0.071453632081939,0.950163261979374,-0.071453632081939,0.390127866495542,-0.0214294278863844,0.309260143671431,0.162289961504209,0.302920723612897,0.421981074673839,0.173738139987723,0.23844140790136,0.327372312985,1.2518887139788,-0.0104075264899313,-0.0178663369413164,-0.0134465995991183,0.0945945486941502,0.361484906499747,0.420669877312992,0.67971151575873,0.938837667383348,0.545857940826103,0.201553282684888,-0.071453632081939,-0.0512818897991579,-0.0492880287198907,-0.0200080275111938,-0.0538684930281247,0.0032892132118986,0.0314201620194753,0.0188496440080377,-0.0570179677122747,-0.00880286570628357,-0.071453632081939,0.314442370775026,-0.0447314933800117,-0.00747342114813143,0.165038167023217,0.034160464954131,0.183821838347483,0.155471327845224,0.184177257797139,0.199822513603959,0.150614271093773,0.156844848656947,0.332152198548975,0.229565552918396,0.243516326143144,0.148697615692472,-0.071453632081939,-0.071453632081939,-0.071453632081939,0.0519735269126351,0.40382392291138,0.693115499615393,0.640482502792673,0.288822821596635,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.071453632081939,-0.0228451534403254,-0.0289269447490726,-0.071453632081939,-0.0439047974025783,-0.0470221997289987,0.0802673794047302,-0.00178471676163151,0.0480912503148737,-0.0388382618226937,0.0206191971175921,-0.000100639571624992,-0.009695795518185,0.0401449484545451,0.00972325063432363,-0.071453632081939,-0.00953113140760853,0.0263004428932895,-0.071453632081939,0.00839582461488377,0.0736236385057834,-0.0274790367235365,-0.071453632081939,-0.0345126658864147,-0.0121812172585579,0.0151420283737642,-0.0263186662353951,0.0797283090019217,-0.0530191529649747,-0.00697280426626957,-0.0273772055336739,0.034035677874086,-0.071453632081939,0.0115867293350697,-0.0459181502781937,-0.071453632081939,0.116360535892711,0.150944070263876,-0.00579780658614293,0.0938700470253859,0.0138886254347469
|coexpression_dpi_cluster_scores_median=0,1.5508220784718,1.3999324854043,1.26103578751562,1.37181213801606,1.19327759496054,1.13402028021215,0.0937736171783551,0.107744855247029,0.16664350344746,0,0,0.0686313343811508,0.078254964563262,0.512401095980553,0.508829640999672,0,0.323070004672395,0.226747351639347,0.266885070731364,0.286787833421178,0,0,1.01197454783605,0.955655277403732,1.32424373228759,1.30001969110483,1.34471013170613,0.826120341838576,0.723004905351138,1.16871226947734,0,0,0,0.119168287736875,0.307729110464137,0.207501896467584,0.264124112013994,0.2507456850819,0.182849227049958,0.656039614150155,0.57196280697689,0.17187568289743,0,0,0,0,0,0,0,0.107200755467032,0,0.22301034595168,0.174933557942621,0.223284998180554,0,0,0.180605254120548,0,0,0,0,0.276299728348189,0.278730678120876,0.298605602657084,0.495744142636618,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0317017435824471,0,0.481306645940538,0.554037262465759,1.46057951422652,0.187437010020026,0.469723258307596,0.160776625956154,0.231016224842307,0,0,0,0,0,0,0,0.217345243425905,0.178032475525152,0.177687811491981,0.745648929515808,0.360723912934686,0.0601091194109999,0,0,0,0.114425913041783,0.0482820047261801,0.0514097768499148,0.0959343498639139,0.156487991687508,0.275221618407307,0.00235047509018202,0.108727687022895,0.0800503245290197,0.674662332002395,0,0,1.10554508155557,0,0,0.140259928189304,0,0,0,0,0,0,0,0,0.096497738357694,0,0.312221647018813,0,0,0,0,0,0,0,0.0351089906730361,0,0,0,0,0,0,0,0,0,0.0994554632344034,0.267755989069377,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158091042771083,0.0546921007390138,0,0,1.47823239180825,1.54874031977328,0,0,0,0,0.221970542984498,0.681649329645302,0.855451177512016,0.298458699503772,0.545721674475938,0.679443611680823,0.61483664184394,1.13301078295238,0.910227043562793,0.83091551259749,0,0,0,0,0.080052954775699,0.0827211653955138,0,0,0.118594524292246,0.095794817833365,0.44384412465388,0,0.0375779369397032,0,0,0,0.098514232005992,0.270233464711444,0.121976689400977,0.10536076625968,0.58831251521849,0.137398724818722,0.210606173730573,0.30326422372663,0.446222381383172,0.388692634028637,0.284152233790825,0,0,0,0,0,0.169112038294096,0.0774164737207147,0,0.00689526327327089,0.0402533575842721,0.0659019793256198,0.0944403174247222,0,0.847057329466634,1.42337536387192,0,0.10582914506561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108524491213051,0.0711694759496908,0.0817164486056561,0.365443239730205,0,0,0,0,0,0,0.360241417805924,0.134665885471472,0,0,0,0,0,0,0,0,0,0,0,0,0.367254354797442,0.153407546465022,0.0865478886078475,0.0662835200988411,0.0650059127791652,0,0,0,0.918398434967958,0,0.341651353659874,0,0.24074341674033,0.138850957170371,0.189427680629844,0.451821022042821,0.127090816446242,0.152243798462077,0.293892626575138,1.21151378931276,0,0,0.0445418537893845,0.0824580172145032,0.402869475552785,0.345134286437776,0.658402428852134,0.776218900094396,0.522844372020201,0,0,0,0,0,0,0,0.0460684392021168,0.00339194413050695,0,0,0,0.436541050505948,0,0,0.10031596050676,0,0.145309149361067,0.133726109153694,0.240161613745793,0.177488089914974,0.206732655436992,0.177285640662167,0.316397440896801,0.313515058346122,0.199860588049263,0.0887491219977394,0,0,0,0.0767094571656325,0.398193528522301,0.824626927106975,0.578271098638792,0.176546191435317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0871588832444397,0,0,0,0,0,0.0388749848471105,0.0269518943326477,0.0242538736058389,0,0.0476191773904887,0,0,0,0.0928371855975292,0,0,0,0,0.0101506357834044,0,0,0,0,0,0.0408018333703219,0,0,0,0,0.091291089277545,0.0845301845292944,0,0.0865703124974023,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
}}
}}

Revision as of 13:30, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr5:115373243..115373255,+p4@Oasl1
Mm9::chr5:115373352..115373363,+p2@Oasl1
Mm9::chr5:115373396..115373409,+p1@Oasl1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:3496&oldid=2152782"