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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
|coexpression_dpi_cluster_scores_mean=0.34343271907826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.816296156159051,0,0,0,0.0546670935592277,0,0,0,0,0,0.0289918065944652,0,0,0,0.0903469195484817,0.210079290551775,0.161038486214538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0205844358967264,0,0,0,0,0,0.0368480287818087,0,0,0,0,0,0.637648503682455,0,0,0,0.128195477214285,0,0,0,0,0,0,0.548005679000207,0,0,0.0231592211867425,0,0.05490629185311,0,0,0,0.216108139306657,0,0,0.0572714472741017,0.0916449143191237,0.0981370735916123,0,0,0,0.0329339538696473,0,0,0,0.0202062562254905,0,0,0,0,0,0,0.113106331030559,0.0628879792226909,0.292350461660722,0.0276479775833212,0,0,0,0,0,0,0,0,0.0282597520565416,0.0250735332543124,0.0848236495926866,0.135820096960085,0.108244258635657,0.04325704227788,0.0696010162215227,0.126328742971524,0,0,0,0,0,0,0.0307600234638862,0,0.020768774005579,0.0766119452702577,0.201042153923628,0.0159873092058965,0,0,0,0,0,0,0,0,0,0.033967285130882,0,0,0.033196373278218,0,0,0,0.128152882460717,0,0.0324578881582755,0.0262678054601152,0.0257849511336695,0.0928278873935657,0,0.0485316455941463,0.423040359481732,0.565326335086851,0.769451464938053,0.985140995530254,1.09348246015277,1.12933661674231,1.36860126715084,1.54155119212701,1.55638284925614,1.50257600414176,0,0,0,0,0,0,0.386118637983595,0.535191511502759,0,0,0,0.045799574939574,0,0,0,0,0.201778524961654,0.0465196188950117,0.172024562801665,0.40000956441671,1.03163941436674,1.44805587312185,1.53311804636741,1.27841106837012,0.366781937448875,0.422754935403674,0.315891182466875,0.303854455952325,0.422142284414146,0.470105869005688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472687540954062,0.18106281544866,0.081646314070382,0.557908374326079,0,0.17833876014579,0.0934480045572447,0.096159492544701,0.175550444299962,0.116084780042432,0.102763233876781,0.10675706431363,0.0441396529218,0,0,0,0,0,0.0333094081862488,0.117744185213803,0.0236339951876586,0.0237604138459295,0,0,0.418265734588334,0.051135848821674,0.0288492962026158,0,0,0,0.0163248575732391,0.0220018491878135,0.0740586442457873,0,0,0.0271622003567789,0,0,0,0,0,0,0,0.341038949067863,0.0212571866904302,0.128333377255506,0.155294798671798,0.169803088547049,0.177244267685642,0.105945561666045,0.0997515899424057,0.150712654462772,0,0,0,0,0,0,0.0508487982458491,0,0.0160640156187697,0.0177189959645354,0,0,0.0366419935235673,0,0.0267221387019274,0.0270463608635351,0,0.0238412128518329,0.0484363831203557,0.0164312680455674,0.0374656234811923,0,0,0,0,0,0.0160017698361234,0,0,0,0,0.0255698190552108,1.51109271587379,1.48813670426471,0.620729189647695,0,0,0,0,0,0,0,0,0,0,0,0.0273046679227243,0,0,0.156354576449272,0.070626096455427,0.27533987396126,0.608401057600211,0.539206169289448,0.647230015569984,0.528784302472632,0.595657570290093,0.513767889258646,0.594562978391027,0.52879205751165,0.505839260005857,0.455623205257921,0.537819367343246,0.442031283733783,0.508643059330237,0.529832042535855,0.562564785618774,0.576468679594039,0.521516176124942,0.545311770838262,0.570995188489546,0.556864164109243,0.461789111435477,0.447663209518083,0.528961758595934,0.531693372518855,0.491776368207116,0.467944694375386,0.599434339092729,0.529482496239502,0.543553658123824,0.257759314626399,0.602873809401581,0.380441068350725,0.0253389627196635,0.0577135416649349,0.0853422575166858
|coexpression_dpi_cluster_scores_mean=0.34343271907826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.816296156159051,0,0,0,0.0546670935592277,0,0,0,0,0,0.0289918065944652,0,0,0,0.0903469195484817,0.210079290551775,0.161038486214538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0205844358967264,0,0,0,0,0,0.0368480287818087,0,0,0,0,0,0.637648503682455,0,0,0,0.128195477214285,0,0,0,0,0,0,0.548005679000207,0,0,0.0231592211867425,0,0.05490629185311,0,0,0,0.216108139306657,0,0,0.0572714472741017,0.0916449143191237,0.0981370735916123,0,0,0,0.0329339538696473,0,0,0,0.0202062562254905,0,0,0,0,0,0,0.113106331030559,0.0628879792226909,0.292350461660722,0.0276479775833212,0,0,0,0,0,0,0,0,0.0282597520565416,0.0250735332543124,0.0848236495926866,0.135820096960085,0.108244258635657,0.04325704227788,0.0696010162215227,0.126328742971524,0,0,0,0,0,0,0.0307600234638862,0,0.020768774005579,0.0766119452702577,0.201042153923628,0.0159873092058965,0,0,0,0,0,0,0,0,0,0.033967285130882,0,0,0.033196373278218,0,0,0,0.128152882460717,0,0.0324578881582755,0.0262678054601152,0.0257849511336695,0.0928278873935657,0,0.0485316455941463,0.423040359481732,0.565326335086851,0.769451464938053,0.985140995530254,1.09348246015277,1.12933661674231,1.36860126715084,1.54155119212701,1.55638284925614,1.50257600414176,0,0,0,0,0,0,0.386118637983595,0.535191511502759,0,0,0,0.045799574939574,0,0,0,0,0.201778524961654,0.0465196188950117,0.172024562801665,0.40000956441671,1.03163941436674,1.44805587312185,1.53311804636741,1.27841106837012,0.366781937448875,0.422754935403674,0.315891182466875,0.303854455952325,0.422142284414146,0.470105869005688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472687540954062,0.18106281544866,0.081646314070382,0.557908374326079,0,0.17833876014579,0.0934480045572447,0.096159492544701,0.175550444299962,0.116084780042432,0.102763233876781,0.10675706431363,0.0441396529218,0,0,0,0,0,0.0333094081862488,0.117744185213803,0.0236339951876586,0.0237604138459295,0,0,0.418265734588334,0.051135848821674,0.0288492962026158,0,0,0,0.0163248575732391,0.0220018491878135,0.0740586442457873,0,0,0.0271622003567789,0,0,0,0,0,0,0,0.341038949067863,0.0212571866904302,0.128333377255506,0.155294798671798,0.169803088547049,0.177244267685642,0.105945561666045,0.0997515899424057,0.150712654462772,0,0,0,0,0,0,0.0508487982458491,0,0.0160640156187697,0.0177189959645354,0,0,0.0366419935235673,0,0.0267221387019274,0.0270463608635351,0,0.0238412128518329,0.0484363831203557,0.0164312680455674,0.0374656234811923,0,0,0,0,0,0.0160017698361234,0,0,0,0,0.0255698190552108,1.51109271587379,1.48813670426471,0.620729189647695,0,0,0,0,0,0,0,0,0,0,0,0.0273046679227243,0,0,0.156354576449272,0.070626096455427,0.27533987396126,0.608401057600211,0.539206169289448,0.647230015569984,0.528784302472632,0.595657570290093,0.513767889258646,0.594562978391027,0.52879205751165,0.505839260005857,0.455623205257921,0.537819367343246,0.442031283733783,0.508643059330237,0.529832042535855,0.562564785618774,0.576468679594039,0.521516176124942,0.545311770838262,0.570995188489546,0.556864164109243,0.461789111435477,0.447663209518083,0.528961758595934,0.531693372518855,0.491776368207116,0.467944694375386,0.599434339092729,0.529482496239502,0.543553658123824,0.257759314626399,0.602873809401581,0.380441068350725,0.0253389627196635,0.0577135416649349,0.0853422575166858
|coexpression_dpi_cluster_scores_median=0.441166642719321,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.506657285314008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0667859388724756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381014703081243,0,0,0,0.153061513253607,0,0,0,0,0,0,0.226626523502606,0,0,0,0,0,0,0,0,0.174463933976285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0805105854221362,0.0509235292940968,0.245060439302742,0,0,0,0,0,0,0,0,0,0,0,0.0703892716151147,0.0860734338295156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.186545793286102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195623968526031,0.255209669792245,0.327783284444535,0.607966215805611,0.721559584554013,0.744983259285823,1.00185588674424,1.14120144508614,1.19314914335156,1.23464452818034,0,0,0,0,0,0,0.098514232005992,0.197388711530769,0,0,0,0,0,0,0,0,0.0736278867910527,0,0,0.178756942224084,0.677154537461907,1.22390040701616,1.23519925776102,1.1661148724829,0.212331610807172,0.159245076116426,0.325553299342784,0.297362109540806,0.308801213670539,0.53895483034423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232920019915626,0,0.122469471105573,0.497567011948905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0843392403965415,0,0,0,0,0.0915514965999916,0,0,0,0,0,0,0,0.111087966368681,0,0,0,0,0,0,0,0,0,0,0,0,0.0803809427109337,0.0849373898696927,0.0824580172145032,0,0,0,0,0,0,0,0,0,0,0.0527554171614426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04668451424532,1.09185683480178,0.398040519458382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324536297029726,0.209006745960922,0.511406640584547,0.17765030293269,0.245620709720879,0.244154700692047,0.307508142830053,0.370055460896091,0.26987051421268,0.169172763866184,0.356929394292355,0.0766073954291401,0.349521849431601,0.393046569245674,0.375018918708493,0.275859125630462,0.340876399369206,0.389779719344973,0.414949873228664,0.371775781228211,0.189990830607665,0.252661106676919,0.225056016595504,0.193442483447008,0.28982969741047,0.318803782272219,0.259704250749409,0.209447282040344,0.24837215409455,0.0968441960560167,0.458101692104149,0.26939249630118,0,0.0865703124974023,0.0905641158318875
|gostat_on_MCL_coexpression=GO:0016471;vacuolar proton-transporting V-type ATPase complex;0.00679340382402893;140494!GO:0033176;proton-transporting V-type ATPase complex;0.00679340382402893;140494!GO:0015991;ATP hydrolysis coupled proton transport;0.00679340382402893;140494!GO:0015988;energy coupled proton transport, against electrochemical gradient;0.00679340382402893;140494!GO:0005774;vacuolar membrane;0.0101901057360434;140494!GO:0044437;vacuolar part;0.0101901057360434;140494!GO:0005903;brush border;0.0101901057360434;140494!GO:0008553;hydrogen-exporting ATPase activity, phosphorylative mechanism;0.0101901057360434;140494!GO:0016469;proton-transporting two-sector ATPase complex;0.013964218971615;140494!GO:0015992;proton transport;0.0169835095600723;140494!GO:0006818;hydrogen transport;0.0169835095600723;140494!GO:0015662;ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;0.0169835095600723;140494!GO:0045177;apical part of cell;0.0196523467766551;140494!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0196523467766551;140494!GO:0015078;hydrogen ion transmembrane transporter activity;0.0202258159306316;140494!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.0202258159306316;140494!GO:0043492;ATPase activity, coupled to movement of substances;0.0202258159306316;140494!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0202258159306316;140494!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0202258159306316;140494!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0202258159306316;140494!GO:0015399;primary active transmembrane transporter activity;0.0202258159306316;140494!GO:0022890;inorganic cation transmembrane transporter activity;0.0202258159306316;140494!GO:0005773;vacuole;0.0282073941389027;140494!GO:0042623;ATPase activity, coupled;0.0318440804251356;140494!GO:0016887;ATPase activity;0.035461567961431;140494!GO:0015672;monovalent inorganic cation transport;0.0373637210321591;140494!GO:0022804;active transmembrane transporter activity;0.0396281889735021;140494!GO:0042995;cell projection;0.044157124856188;140494!GO:0017111;nucleoside-triphosphatase activity;0.0472541177759659;140494!GO:0008324;cation transmembrane transporter activity;0.0472541177759659;140494!GO:0006812;cation transport;0.0472541177759659;140494!GO:0016462;pyrophosphatase activity;0.0472541177759659;140494!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;0.0472541177759659;140494!GO:0016817;hydrolase activity, acting on acid anhydrides;0.0472541177759659;140494!
|gostat_on_MCL_coexpression=GO:0016471;vacuolar proton-transporting V-type ATPase complex;0.00679340382402893;140494!GO:0033176;proton-transporting V-type ATPase complex;0.00679340382402893;140494!GO:0015991;ATP hydrolysis coupled proton transport;0.00679340382402893;140494!GO:0015988;energy coupled proton transport, against electrochemical gradient;0.00679340382402893;140494!GO:0005774;vacuolar membrane;0.0101901057360434;140494!GO:0044437;vacuolar part;0.0101901057360434;140494!GO:0005903;brush border;0.0101901057360434;140494!GO:0008553;hydrogen-exporting ATPase activity, phosphorylative mechanism;0.0101901057360434;140494!GO:0016469;proton-transporting two-sector ATPase complex;0.013964218971615;140494!GO:0015992;proton transport;0.0169835095600723;140494!GO:0006818;hydrogen transport;0.0169835095600723;140494!GO:0015662;ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;0.0169835095600723;140494!GO:0045177;apical part of cell;0.0196523467766551;140494!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0196523467766551;140494!GO:0015078;hydrogen ion transmembrane transporter activity;0.0202258159306316;140494!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.0202258159306316;140494!GO:0043492;ATPase activity, coupled to movement of substances;0.0202258159306316;140494!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0202258159306316;140494!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0202258159306316;140494!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0202258159306316;140494!GO:0015399;primary active transmembrane transporter activity;0.0202258159306316;140494!GO:0022890;inorganic cation transmembrane transporter activity;0.0202258159306316;140494!GO:0005773;vacuole;0.0282073941389027;140494!GO:0042623;ATPase activity, coupled;0.0318440804251356;140494!GO:0016887;ATPase activity;0.035461567961431;140494!GO:0015672;monovalent inorganic cation transport;0.0373637210321591;140494!GO:0022804;active transmembrane transporter activity;0.0396281889735021;140494!GO:0042995;cell projection;0.044157124856188;140494!GO:0017111;nucleoside-triphosphatase activity;0.0472541177759659;140494!GO:0008324;cation transmembrane transporter activity;0.0472541177759659;140494!GO:0006812;cation transport;0.0472541177759659;140494!GO:0016462;pyrophosphatase activity;0.0472541177759659;140494!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;0.0472541177759659;140494!GO:0016817;hydrolase activity, acting on acid anhydrides;0.0472541177759659;140494!
}}
}}

Revision as of 13:31, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr6:38059320..38059402,+p1@Tmem213
Mm9::chr6:38059408..38059417,+p2@Tmem213
Mm9::chr6:38059548..38059574,-p6@Atp6v0a4


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0016471vacuolar proton-transporting V-type ATPase complex0.00679340382402893
GO:0033176proton-transporting V-type ATPase complex0.00679340382402893
GO:0015991ATP hydrolysis coupled proton transport0.00679340382402893
GO:0015988energy coupled proton transport, against electrochemical gradient0.00679340382402893
GO:0005774vacuolar membrane0.0101901057360434
GO:0044437vacuolar part0.0101901057360434
GO:0005903brush border0.0101901057360434
GO:0008553hydrogen-exporting ATPase activity, phosphorylative mechanism0.0101901057360434
GO:0016469proton-transporting two-sector ATPase complex0.013964218971615
GO:0015992proton transport0.0169835095600723
GO:0006818hydrogen transport0.0169835095600723
GO:0015662ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism0.0169835095600723
GO:0045177apical part of cell0.0196523467766551
GO:0042625ATPase activity, coupled to transmembrane movement of ions0.0196523467766551
GO:0015078hydrogen ion transmembrane transporter activity0.0202258159306316
GO:0015077monovalent inorganic cation transmembrane transporter activity0.0202258159306316
GO:0043492ATPase activity, coupled to movement of substances0.0202258159306316
GO:0042626ATPase activity, coupled to transmembrane movement of substances0.0202258159306316
GO:0016820hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances0.0202258159306316
GO:0015405P-P-bond-hydrolysis-driven transmembrane transporter activity0.0202258159306316
GO:0015399primary active transmembrane transporter activity0.0202258159306316
GO:0022890inorganic cation transmembrane transporter activity0.0202258159306316
GO:0005773vacuole0.0282073941389027
GO:0042623ATPase activity, coupled0.0318440804251356
GO:0016887ATPase activity0.035461567961431
GO:0015672monovalent inorganic cation transport0.0373637210321591
GO:0022804active transmembrane transporter activity0.0396281889735021
GO:0042995cell projection0.044157124856188
GO:0017111nucleoside-triphosphatase activity0.0472541177759659
GO:0008324cation transmembrane transporter activity0.0472541177759659
GO:0006812cation transport0.0472541177759659
GO:0016462pyrophosphatase activity0.0472541177759659
GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides0.0472541177759659
GO:0016817hydrolase activity, acting on acid anhydrides0.0472541177759659



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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