FFCP PHASE1:Mm9::chr2:33496574..33496588,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=|HGNC=|MCL_coexpression_id=1188|UniProt=|association_with_transcript=-124bp_to_ENSMUST00000152118,uc008jhz.1_5end|description=CAGE_peak_4_at_ENSMUST00000152118_5end,CAGE_peak_4_at_uc008jhz.1_5end|id=chr2:33496574..33496588,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0002612,9.50e-13,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002102!2.77e-10!8;UBERON:0004710!2.77e-10!8;UBERON:0005419!2.77e-10!8;UBERON:0005417!2.77e-10!8;UBERON:0005729!2.77e-10!8;UBERON:0002240!8.20e-10!6;UBERON:0005174!8.20e-10!6;UBERON:0001137!8.20e-10!6;UBERON:0000970!3.21e-09!9;UBERON:0000019!3.21e-09!9;UBERON:0000047!3.21e-09!9;UBERON:0004088!3.21e-09!9;UBERON:0002104!3.21e-09!9;UBERON:0001456!3.21e-09!9;UBERON:0003072!3.21e-09!9;UBERON:0003071!3.21e-09!9;UBERON:0004128!3.21e-09!9;UBERON:0001948!1.43e-08!5;UBERON:0002315!1.43e-08!5;UBERON:0001444!3.01e-07!11;UBERON:0003076!3.06e-07!12;UBERON:0003057!3.06e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0002102,7.44e-32,7;UBERON:0004710,7.44e-32,7;UBERON:0005419,7.44e-32,7;UBERON:0005417,7.44e-32,7;UBERON:0005729,7.44e-32,7;UBERON:0010708,6.54e-28,8;UBERON:0000026,1.09e-18,12;UBERON:0004708,1.09e-18,12;UBERON:0002101,1.09e-18,12;UBERON:0004357,1.09e-18,12;UBERON:0004347,1.09e-18,12;UBERON:0005732,1.09e-18,12;UBERON:0005733,1.09e-18,12;UBERON:0010707,2.89e-17,13;UBERON:0001948,1.96e-16,5;UBERON:0002315,1.96e-16,5;UBERON:0002240,8.25e-14,6;UBERON:0005174,8.25e-14,6;UBERON:0001137,8.25e-14,6;UBERON:0002257,9.50e-13,3;UBERON:0003102,2.98e-10,22;UBERON:0000153,2.62e-07,43;UBERON:0003076,3.34e-07,12;UBERON:0003057,3.34e-07,12|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606949382578793,0.528990979272033,0.633831403506179,0,0,0,0,0,0.599200221036809,0.384218305321555,0,0,0,1.71390590642282,0.883474163806454,0,0,0,0,0,0,1.05509030184155,0.823388792421687,0,0,0,0.30559649555362,0.294628585473668,1.13897344639282,6.52398060388552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149790639404823,0,0,0,0,0,0.162241263067758,0,0,0,0.210441855886474,1.17108398666433,0.459804208866946,0.900310649026746,0.753524089178575,0.340182495756639,0.12811372028485,0.0937017245597288,0,2.58681591519411,3.40390944302075,5.27853372491847,1.7535658594206,2.22437799380478,0.696504333044333,0.823128545631774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114248512609729,0,0.610953983535943,0,0.0701358198903186,0.126473074248515,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.481651769963376,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485561272309963,0,0,0,0,0,0,0,0,0,0,0,0.36012218806262,0.129358683782755,0,0,0,0,0,0,0,0,0,0,0,0.119372344003136,0,0,0.556275906031529,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.830298780673413,0.798049746802062,0.853668028770671,0.243106717068294,0.419226325255965,0.367687016900028,0,0,0,0.252697211763798,0,0.377252682772152,0.0936415074698824,0.0640251524048693,0,0,0.347652977834566,0.38581844092741,0,0.147198920134397,0,0,0,0,0,0.0846146078916765,0.182927972872773,0.263069711437843,0.271608227691724,0,0.118635018124174,0.0985044823755635,0.409231043169689,0.154936841185966,0.192906610981141,0,0,0,0.191288332068843,0,0|short_description=p4@ENSMUST00000152118,p4@uc008jhz.1}} | ||
|EntrezGene= | |||
|HGNC= | |||
|MCL_coexpression_id=1188 | |||
|UniProt= | |||
|association_with_transcript=-124bp_to_ENSMUST00000152118,uc008jhz.1_5end | |||
|description=CAGE_peak_4_at_ENSMUST00000152118_5end,CAGE_peak_4_at_uc008jhz.1_5end | |||
|id=chr2:33496574..33496588,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002612,9.50e-13,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002102!2.77e-10!8;UBERON:0004710!2.77e-10!8;UBERON:0005419!2.77e-10!8;UBERON:0005417!2.77e-10!8;UBERON:0005729!2.77e-10!8;UBERON:0002240!8.20e-10!6;UBERON:0005174!8.20e-10!6;UBERON:0001137!8.20e-10!6;UBERON:0000970!3.21e-09!9;UBERON:0000019!3.21e-09!9;UBERON:0000047!3.21e-09!9;UBERON:0004088!3.21e-09!9;UBERON:0002104!3.21e-09!9;UBERON:0001456!3.21e-09!9;UBERON:0003072!3.21e-09!9;UBERON:0003071!3.21e-09!9;UBERON:0004128!3.21e-09!9;UBERON:0001948!1.43e-08!5;UBERON:0002315!1.43e-08!5;UBERON:0001444!3.01e-07!11;UBERON:0003076!3.06e-07!12;UBERON:0003057!3.06e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002102,7.44e-32,7;UBERON:0004710,7.44e-32,7;UBERON:0005419,7.44e-32,7;UBERON:0005417,7.44e-32,7;UBERON:0005729,7.44e-32,7;UBERON:0010708,6.54e-28,8;UBERON:0000026,1.09e-18,12;UBERON:0004708,1.09e-18,12;UBERON:0002101,1.09e-18,12;UBERON:0004357,1.09e-18,12;UBERON:0004347,1.09e-18,12;UBERON:0005732,1.09e-18,12;UBERON:0005733,1.09e-18,12;UBERON:0010707,2.89e-17,13;UBERON:0001948,1.96e-16,5;UBERON:0002315,1.96e-16,5;UBERON:0002240,8.25e-14,6;UBERON:0005174,8.25e-14,6;UBERON:0001137,8.25e-14,6;UBERON:0002257,9.50e-13,3;UBERON:0003102,2.98e-10,22;UBERON:0000153,2.62e-07,43;UBERON:0003076,3.34e-07,12;UBERON:0003057,3.34e-07,12 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606949382578793,0.528990979272033,0.633831403506179,0,0,0,0,0,0.599200221036809,0.384218305321555,0,0,0,1.71390590642282,0.883474163806454,0,0,0,0,0,0,1.05509030184155,0.823388792421687,0,0,0,0.30559649555362,0.294628585473668,1.13897344639282,6.52398060388552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149790639404823,0,0,0,0,0,0.162241263067758,0,0,0,0.210441855886474,1.17108398666433,0.459804208866946,0.900310649026746,0.753524089178575,0.340182495756639,0.12811372028485,0.0937017245597288,0,2.58681591519411,3.40390944302075,5.27853372491847,1.7535658594206,2.22437799380478,0.696504333044333,0.823128545631774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114248512609729,0,0.610953983535943,0,0.0701358198903186,0.126473074248515,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.481651769963376,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485561272309963,0,0,0,0,0,0,0,0,0,0,0,0.36012218806262,0.129358683782755,0,0,0,0,0,0,0,0,0,0,0,0.119372344003136,0,0,0.556275906031529,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.830298780673413,0.798049746802062,0.853668028770671,0.243106717068294,0.419226325255965,0.367687016900028,0,0,0,0.252697211763798,0,0.377252682772152,0.0936415074698824,0.0640251524048693,0,0,0.347652977834566,0.38581844092741,0,0.147198920134397,0,0,0,0,0,0.0846146078916765,0.182927972872773,0.263069711437843,0.271608227691724,0,0.118635018124174,0.0985044823755635,0.409231043169689,0.154936841185966,0.192906610981141,0,0,0,0.191288332068843,0,0 | |||
|short_description=p4@ENSMUST00000152118,p4@uc008jhz.1 | |||
}} |
Revision as of 23:51, 13 September 2013
Short description: | p4@ENSMUST00000152118, p4@uc008jhz.1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_ENSMUST00000152118_5end, CAGE_peak_4_at_uc008jhz.1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1188 |
Association with transcript: | -124bp_to_ENSMUST00000152118, uc008jhz.1_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of the ventral spinal cord | 9.50e-13 | 3 |
Ontology term | p-value | n |
---|---|---|
forelimb | 7.44e-32 | 7 |
pectoral appendage | 7.44e-32 | 7 |
pectoral appendage bud | 7.44e-32 | 7 |
forelimb bud | 7.44e-32 | 7 |
forelimb/pectoral fin field | 7.44e-32 | 7 |
pectoral complex | 6.54e-28 | 8 |
appendage | 1.09e-18 | 12 |
paired limb/fin | 1.09e-18 | 12 |
limb | 1.09e-18 | 12 |
paired limb/fin bud | 1.09e-18 | 12 |
limb bud | 1.09e-18 | 12 |
limb/fin field | 1.09e-18 | 12 |
limb field | 1.09e-18 | 12 |
appendage girdle complex | 2.89e-17 | 13 |
regional part of spinal cord | 1.96e-16 | 5 |
gray matter of spinal cord | 1.96e-16 | 5 |
spinal cord | 8.25e-14 | 6 |
dorsal region element | 8.25e-14 | 6 |
dorsum | 8.25e-14 | 6 |
ventral horn of spinal cord | 9.50e-13 | 3 |
surface structure | 2.98e-10 | 22 |
anterior region of body | 2.62e-07 | 43 |
posterior neural tube | 3.34e-07 | 12 |
chordal neural plate | 3.34e-07 | 12 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.