FFCP PHASE1:Mm9::chr6:79969002..79969024,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=243499|HGNC=|MCL_coexpression_id=2|UniProt=Q80XG9|association_with_transcript=0bp_to_ENSMUST00000126399_5end|description=CAGE_peak_3_at_Lrrtm4_5end|id=chr6:79969002..79969024,+|ontology_enrichment_celltype=CL:0000540!2.63e-17!33;CL:0000047!2.63e-17!33;CL:0000031!2.63e-17!33;CL:0000404!2.63e-17!33;CL:0000117!1.32e-13!23;CL:0000337!1.32e-13!23;CL:0000393!1.84e-12!39;CL:0000211!1.84e-12!39;CL:0000221!6.74e-12!44;CL:0000133!6.74e-12!44;CL:0002319!2.96e-11!43;CL:0000055!6.92e-08!50|ontology_enrichment_celltype_v019_2=CL:0000117,1.63e-23,23;CL:0000337,1.63e-23,23;CL:0000540,9.39e-22,33;CL:0000047,9.39e-22,33;CL:0000031,9.39e-22,33;CL:0000404,9.39e-22,33;CL:0000393,2.70e-17,39;CL:0000211,2.70e-17,39;CL:0000221,3.92e-16,44;CL:0000133,3.92e-16,44;CL:0002319,5.00e-15,43;CL:0002321,1.45e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!3.45e-28!75;UBERON:0001016!3.45e-28!75;UBERON:0001017!3.83e-28!73;UBERON:0005743!3.83e-28!73;UBERON:0004121!3.22e-26!102;UBERON:0000924!3.22e-26!102;UBERON:0006601!3.22e-26!102;UBERON:0002346!1.62e-23!71;UBERON:0003075!1.62e-23!71;UBERON:0007284!1.62e-23!71;UBERON:0001049!4.03e-22!52;UBERON:0005068!4.03e-22!52;UBERON:0006241!4.03e-22!52;UBERON:0007135!4.03e-22!52;UBERON:0000033!7.90e-22!63;UBERON:0000955!1.74e-20!50;UBERON:0006238!1.74e-20!50;UBERON:0002616!9.81e-20!49;UBERON:0003056!1.06e-19!49;UBERON:0002020!2.23e-19!34;UBERON:0003080!1.10e-18!40;UBERON:0002780!5.88e-18!39;UBERON:0001890!5.88e-18!39;UBERON:0006240!5.88e-18!39;UBERON:0002791!9.67e-16!29;UBERON:0003528!9.67e-16!29;UBERON:0001893!9.67e-16!29;UBERON:0007811!3.56e-11!86;UBERON:0000153!5.28e-11!94;UBERON:0000956!5.64e-11!21;UBERON:0001869!5.64e-11!21;UBERON:0000203!5.64e-11!21;UBERON:0002021!9.79e-10!10;UBERON:0000411!9.79e-10!10;UBERON:0001950!9.79e-10!10;UBERON:0002619!2.06e-08!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.54e-39,73;UBERON:0001016,8.83e-38,75;UBERON:0000073,4.87e-36,54;UBERON:0002346,4.81e-35,64;UBERON:0003075,4.81e-35,64;UBERON:0007284,4.81e-35,64;UBERON:0004121,2.50e-34,95;UBERON:0000924,2.50e-34,95;UBERON:0006601,2.50e-34,95;UBERON:0002020,3.60e-34,34;UBERON:0001049,1.23e-33,52;UBERON:0005068,1.23e-33,52;UBERON:0006241,1.23e-33,52;UBERON:0007135,1.23e-33,52;UBERON:0010371,4.55e-33,73;UBERON:0003528,3.16e-27,29;UBERON:0002791,3.16e-27,29;UBERON:0001893,3.16e-27,29;UBERON:0000955,4.18e-27,47;UBERON:0006238,4.18e-27,47;UBERON:0003080,6.15e-27,40;UBERON:0003056,1.34e-26,49;UBERON:0002616,8.55e-26,46;UBERON:0002780,1.26e-25,39;UBERON:0001890,1.26e-25,39;UBERON:0006240,1.26e-25,39;UBERON:0010314,7.46e-25,92;UBERON:0000956,9.14e-20,21;UBERON:0001869,9.14e-20,21;UBERON:0000203,9.14e-20,21;UBERON:0002021,3.11e-17,10;UBERON:0000411,3.11e-17,10;UBERON:0001950,3.11e-17,10;UBERON:0002619,7.62e-15,17;UBERON:0004111,1.13e-10,122;UBERON:0000025,2.74e-10,114;UBERON:0002240,2.12e-09,6;UBERON:0005174,2.12e-09,6;UBERON:0001137,2.12e-09,6;UBERON:0002420,1.75e-08,8;UBERON:0007245,1.75e-08,8;UBERON:0010009,1.75e-08,8;UBERON:0010011,1.75e-08,8;UBERON:0000454,1.75e-08,8;UBERON:0001948,4.15e-08,5;UBERON:0002315,4.15e-08,5;UBERON:0011216,1.99e-07,194;UBERON:0000483,2.15e-07,174;UBERON:0000119,3.53e-07,176;UBERON:0003076,4.56e-07,12;UBERON:0003057,4.56e-07,12|phase1_expression=7.36684696682052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19060606211498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82084814773638,2.11596391708813,1.26766280701236,0,0,0,0,0,0,0,2.07379224616955,3.24014251996058,2.52389953621658,2.57085885963423,2.65042249141936,1.22490799214954,0.670918297127655,0,2.20231761998777,3.19218345212969,2.4577045320999,2.50583946687368,3.38504281328916,2.6045668527838,1.67509799400829,2.8138130501584,3.0559649555362,5.30331453852602,6.83384067835694,4.65998614563251,0.075726193333184,0.302286240427142,0,0,0,0,0,0,0.140444420131752,0,0,0,5.35204995151386,0,0,0,0,0,0,0.11418387971906,0,0.890652834388949,0,0,0,0.452167921657868,0.470354828542819,0.125666591329675,0,0,0,0.161766849947409,0,0,0,0,0.83778682725382,0,0,0,0,4.34392854273986,2.74500361691176,0.628271760564322,5.73620256634512,6.64860189058859,1.87009240103604,4.70499662896497,0.203678727700633,0,0,0.420883711772948,0,0.229902104433473,0,1.05493372485001,1.42876648217788,1.0249097622788,0.937017245597288,1.29351685369508,0,0.756424320671277,0.175951124163949,0.219195732427575,0.278047249225598,0,0.411564272815887,0.199034266818493,0,0,0,1.03562886267751,0.469052119962192,0,0,0,0.154267112887378,0,0,0,0,0,0,0,0,0,10.9350773253346,2.46971069710283,0,0,0.639864751605702,0.464473343720877,0,0.201683524623343,0,0.190225626112559,0,0,0,0,0,0,0,0,0.189667900953082,0.114248512609729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0,0.37898282354097,0,0,0,0,0,0,0.315270288212382,0,0,0,0,0,0,0,0,0,2.24770825982909,1.64096361229084,0,0,1.57754109708128,0.390438744296638,1.93881057959519,0.477937595905104,0.222798674082394,0.849229592366497,0.809621403349789,1.75353514746787,0.790575555893047,4.81981974632711,0.141940085208269,0.178065603667255,0,0.164970122972535,0,0,0,0.188605079755898,0,0,0,0,0,0,0,0,0.340439605753788,0.36012218806262,0.517434735131018,1.28602221018955,1.77340233642274,0.178368817602071,0.987294123612726,0,0,0,0,0.16488625294148,0,0.120625849856312,0.119372344003136,0.328281799490123,0,3.33765543618917,0,0.412773735926445,0.185194527369712,0,0,0,0,0,0,0,0.632671987162271,0,0.108005340821801,0.627264888043406,0.436725127492355,0.404593039154462,0.0826534557253359,0,0,0,0,0.149516546043979,0.165458490457098,0.583353565032143,0.387479470433193,0.675824501963113,0.938857909166032,0.13020438484395,0,0,0,0,0.202725215290164,0.308132871494482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.6368108063632,20.714635642823,17.7597609166213,15.9823459579629,17.1270629942661,11.3309084608455,16.2005400055633,13.0593148935024,17.672553950384,11.39072685854,0,1.19707462020309,0.512200817262403,1.45864030240976,0.419226325255965,0.735374033800057,1.77797382241292,0.618105171716683,0.320919209591815,0.252697211763798,1.01391719956096,0.377252682772152,1.03005658216871,1.28050304809739,0.631790158511746,0.952587382566147,0.811190281613988,0.964546102318525,0.412085900803307,0.883193520806384,0.685738504770831,0.70990322463735,0.953744759789284,0.726732083161643,0.564656282491984,0.338458431566706,1.28049581010941,0.526139422875686,0.814824683075171,0.561142271657738,0.711810108745045,0.492522411877817,0.818462086339379,0.309873682371932,0.578719832943424,0.499621155875892,1.40358965067245,0.859484216193193,0.191288332068843,0.220591419119515,0.463735671240843|short_description=p3@Lrrtm4}} | ||
|EntrezGene=243499 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|UniProt=Q80XG9 | |||
|association_with_transcript=0bp_to_ENSMUST00000126399_5end | |||
|description=CAGE_peak_3_at_Lrrtm4_5end | |||
|id=chr6:79969002..79969024,+ | |||
|ontology_enrichment_celltype=CL:0000540!2.63e-17!33;CL:0000047!2.63e-17!33;CL:0000031!2.63e-17!33;CL:0000404!2.63e-17!33;CL:0000117!1.32e-13!23;CL:0000337!1.32e-13!23;CL:0000393!1.84e-12!39;CL:0000211!1.84e-12!39;CL:0000221!6.74e-12!44;CL:0000133!6.74e-12!44;CL:0002319!2.96e-11!43;CL:0000055!6.92e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.63e-23,23;CL:0000337,1.63e-23,23;CL:0000540,9.39e-22,33;CL:0000047,9.39e-22,33;CL:0000031,9.39e-22,33;CL:0000404,9.39e-22,33;CL:0000393,2.70e-17,39;CL:0000211,2.70e-17,39;CL:0000221,3.92e-16,44;CL:0000133,3.92e-16,44;CL:0002319,5.00e-15,43;CL:0002321,1.45e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.45e-28!75;UBERON:0001016!3.45e-28!75;UBERON:0001017!3.83e-28!73;UBERON:0005743!3.83e-28!73;UBERON:0004121!3.22e-26!102;UBERON:0000924!3.22e-26!102;UBERON:0006601!3.22e-26!102;UBERON:0002346!1.62e-23!71;UBERON:0003075!1.62e-23!71;UBERON:0007284!1.62e-23!71;UBERON:0001049!4.03e-22!52;UBERON:0005068!4.03e-22!52;UBERON:0006241!4.03e-22!52;UBERON:0007135!4.03e-22!52;UBERON:0000033!7.90e-22!63;UBERON:0000955!1.74e-20!50;UBERON:0006238!1.74e-20!50;UBERON:0002616!9.81e-20!49;UBERON:0003056!1.06e-19!49;UBERON:0002020!2.23e-19!34;UBERON:0003080!1.10e-18!40;UBERON:0002780!5.88e-18!39;UBERON:0001890!5.88e-18!39;UBERON:0006240!5.88e-18!39;UBERON:0002791!9.67e-16!29;UBERON:0003528!9.67e-16!29;UBERON:0001893!9.67e-16!29;UBERON:0007811!3.56e-11!86;UBERON:0000153!5.28e-11!94;UBERON:0000956!5.64e-11!21;UBERON:0001869!5.64e-11!21;UBERON:0000203!5.64e-11!21;UBERON:0002021!9.79e-10!10;UBERON:0000411!9.79e-10!10;UBERON:0001950!9.79e-10!10;UBERON:0002619!2.06e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.54e-39,73;UBERON:0001016,8.83e-38,75;UBERON:0000073,4.87e-36,54;UBERON:0002346,4.81e-35,64;UBERON:0003075,4.81e-35,64;UBERON:0007284,4.81e-35,64;UBERON:0004121,2.50e-34,95;UBERON:0000924,2.50e-34,95;UBERON:0006601,2.50e-34,95;UBERON:0002020,3.60e-34,34;UBERON:0001049,1.23e-33,52;UBERON:0005068,1.23e-33,52;UBERON:0006241,1.23e-33,52;UBERON:0007135,1.23e-33,52;UBERON:0010371,4.55e-33,73;UBERON:0003528,3.16e-27,29;UBERON:0002791,3.16e-27,29;UBERON:0001893,3.16e-27,29;UBERON:0000955,4.18e-27,47;UBERON:0006238,4.18e-27,47;UBERON:0003080,6.15e-27,40;UBERON:0003056,1.34e-26,49;UBERON:0002616,8.55e-26,46;UBERON:0002780,1.26e-25,39;UBERON:0001890,1.26e-25,39;UBERON:0006240,1.26e-25,39;UBERON:0010314,7.46e-25,92;UBERON:0000956,9.14e-20,21;UBERON:0001869,9.14e-20,21;UBERON:0000203,9.14e-20,21;UBERON:0002021,3.11e-17,10;UBERON:0000411,3.11e-17,10;UBERON:0001950,3.11e-17,10;UBERON:0002619,7.62e-15,17;UBERON:0004111,1.13e-10,122;UBERON:0000025,2.74e-10,114;UBERON:0002240,2.12e-09,6;UBERON:0005174,2.12e-09,6;UBERON:0001137,2.12e-09,6;UBERON:0002420,1.75e-08,8;UBERON:0007245,1.75e-08,8;UBERON:0010009,1.75e-08,8;UBERON:0010011,1.75e-08,8;UBERON:0000454,1.75e-08,8;UBERON:0001948,4.15e-08,5;UBERON:0002315,4.15e-08,5;UBERON:0011216,1.99e-07,194;UBERON:0000483,2.15e-07,174;UBERON:0000119,3.53e-07,176;UBERON:0003076,4.56e-07,12;UBERON:0003057,4.56e-07,12 | |||
|phase1_expression=7.36684696682052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19060606211498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82084814773638,2.11596391708813,1.26766280701236,0,0,0,0,0,0,0,2.07379224616955,3.24014251996058,2.52389953621658,2.57085885963423,2.65042249141936,1.22490799214954,0.670918297127655,0,2.20231761998777,3.19218345212969,2.4577045320999,2.50583946687368,3.38504281328916,2.6045668527838,1.67509799400829,2.8138130501584,3.0559649555362,5.30331453852602,6.83384067835694,4.65998614563251,0.075726193333184,0.302286240427142,0,0,0,0,0,0,0.140444420131752,0,0,0,5.35204995151386,0,0,0,0,0,0,0.11418387971906,0,0.890652834388949,0,0,0,0.452167921657868,0.470354828542819,0.125666591329675,0,0,0,0.161766849947409,0,0,0,0,0.83778682725382,0,0,0,0,4.34392854273986,2.74500361691176,0.628271760564322,5.73620256634512,6.64860189058859,1.87009240103604,4.70499662896497,0.203678727700633,0,0,0.420883711772948,0,0.229902104433473,0,1.05493372485001,1.42876648217788,1.0249097622788,0.937017245597288,1.29351685369508,0,0.756424320671277,0.175951124163949,0.219195732427575,0.278047249225598,0,0.411564272815887,0.199034266818493,0,0,0,1.03562886267751,0.469052119962192,0,0,0,0.154267112887378,0,0,0,0,0,0,0,0,0,10.9350773253346,2.46971069710283,0,0,0.639864751605702,0.464473343720877,0,0.201683524623343,0,0.190225626112559,0,0,0,0,0,0,0,0,0.189667900953082,0.114248512609729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0,0.37898282354097,0,0,0,0,0,0,0.315270288212382,0,0,0,0,0,0,0,0,0,2.24770825982909,1.64096361229084,0,0,1.57754109708128,0.390438744296638,1.93881057959519,0.477937595905104,0.222798674082394,0.849229592366497,0.809621403349789,1.75353514746787,0.790575555893047,4.81981974632711,0.141940085208269,0.178065603667255,0,0.164970122972535,0,0,0,0.188605079755898,0,0,0,0,0,0,0,0,0.340439605753788,0.36012218806262,0.517434735131018,1.28602221018955,1.77340233642274,0.178368817602071,0.987294123612726,0,0,0,0,0.16488625294148,0,0.120625849856312,0.119372344003136,0.328281799490123,0,3.33765543618917,0,0.412773735926445,0.185194527369712,0,0,0,0,0,0,0,0.632671987162271,0,0.108005340821801,0.627264888043406,0.436725127492355,0.404593039154462,0.0826534557253359,0,0,0,0,0.149516546043979,0.165458490457098,0.583353565032143,0.387479470433193,0.675824501963113,0.938857909166032,0.13020438484395,0,0,0,0,0.202725215290164,0.308132871494482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.6368108063632,20.714635642823,17.7597609166213,15.9823459579629,17.1270629942661,11.3309084608455,16.2005400055633,13.0593148935024,17.672553950384,11.39072685854,0,1.19707462020309,0.512200817262403,1.45864030240976,0.419226325255965,0.735374033800057,1.77797382241292,0.618105171716683,0.320919209591815,0.252697211763798,1.01391719956096,0.377252682772152,1.03005658216871,1.28050304809739,0.631790158511746,0.952587382566147,0.811190281613988,0.964546102318525,0.412085900803307,0.883193520806384,0.685738504770831,0.70990322463735,0.953744759789284,0.726732083161643,0.564656282491984,0.338458431566706,1.28049581010941,0.526139422875686,0.814824683075171,0.561142271657738,0.711810108745045,0.492522411877817,0.818462086339379,0.309873682371932,0.578719832943424,0.499621155875892,1.40358965067245,0.859484216193193,0.191288332068843,0.220591419119515,0.463735671240843 | |||
|short_description=p3@Lrrtm4 | |||
}} |
Revision as of 10:40, 14 September 2013
Short description: | p3@Lrrtm4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Lrrtm4_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 0bp_to_ENSMUST00000126399_5end |
EntrezGene: | Lrrtm4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.63e-23 | 23 |
neuroblast (sensu Vertebrata) | 1.63e-23 | 23 |
neuron | 9.39e-22 | 33 |
neuronal stem cell | 9.39e-22 | 33 |
neuroblast | 9.39e-22 | 33 |
electrically signaling cell | 9.39e-22 | 33 |
electrically responsive cell | 2.70e-17 | 39 |
electrically active cell | 2.70e-17 | 39 |
ectodermal cell | 3.92e-16 | 44 |
neurectodermal cell | 3.92e-16 | 44 |
neural cell | 5.00e-15 | 43 |
embryonic cell | 1.45e-07 | 70 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.