FFCP PHASE1:Mm9::chr1:94076764..94076840,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=208727|HGNC=|UniProt=|association_with_transcript=77bp_to_uc007cbg.1_5end|description=CAGE_peak_1_at_Hdac4_5end|id=chr1:94076764..94076840,-|ontology_enrichment_celltype=CL:0000540!2.30e-09!33;CL:0000047!2.30e-09!33;CL:0000031!2.30e-09!33;CL:0000404!2.30e-09!33;CL:0000221!4.96e-08!44;CL:0000133!4.96e-08!44;CL:0002319!1.25e-07!43;CL:0000107!2.71e-07!9;CL:0000393!3.93e-07!39;CL:0000211!3.93e-07!39|ontology_enrichment_celltype_v019_2=CL:0000540,2.29e-09,33;CL:0000047,2.29e-09,33;CL:0000031,2.29e-09,33;CL:0000404,2.29e-09,33;CL:0000221,4.95e-08,44;CL:0000133,4.95e-08,44;CL:0002319,1.25e-07,43;CL:0000107,2.71e-07,9;CL:0000393,3.92e-07,39;CL:0000211,3.92e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!1.36e-22!102;UBERON:0000924!1.36e-22!102;UBERON:0006601!1.36e-22!102;UBERON:0001017!3.19e-18!73;UBERON:0005743!3.19e-18!73;UBERON:0000073!2.15e-17!75;UBERON:0001016!2.15e-17!75;UBERON:0002346!9.40e-17!71;UBERON:0003075!9.40e-17!71;UBERON:0007284!9.40e-17!71;UBERON:0000153!1.11e-16!94;UBERON:0007811!7.66e-16!86;UBERON:0000033!1.17e-13!63;UBERON:0003056!1.20e-11!49;UBERON:0000955!1.40e-11!50;UBERON:0006238!1.40e-11!50;UBERON:0001049!3.30e-11!52;UBERON:0005068!3.30e-11!52;UBERON:0006241!3.30e-11!52;UBERON:0007135!3.30e-11!52;UBERON:0002616!5.28e-11!49;UBERON:0003080!7.91e-10!40;UBERON:0002780!1.10e-09!39;UBERON:0001890!1.10e-09!39;UBERON:0006240!1.10e-09!39;UBERON:0002020!6.32e-08!34;UBERON:0000956!1.50e-07!21;UBERON:0001869!1.50e-07!21;UBERON:0000203!1.50e-07!21;UBERON:0002410!2.71e-07!9;UBERON:0002791!3.25e-07!29;UBERON:0003528!3.25e-07!29;UBERON:0001893!3.25e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.12e-20,95;UBERON:0000924,2.12e-20,95;UBERON:0006601,2.12e-20,95;UBERON:0001017,3.17e-18,73;UBERON:0001016,2.14e-17,75;UBERON:0010371,1.93e-16,73;UBERON:0002346,7.26e-15,64;UBERON:0003075,7.26e-15,64;UBERON:0007284,7.26e-15,64;UBERON:0010314,7.10e-14,92;UBERON:0000073,8.21e-12,54;UBERON:0003056,1.20e-11,49;UBERON:0001049,3.29e-11,52;UBERON:0005068,3.29e-11,52;UBERON:0006241,3.29e-11,52;UBERON:0007135,3.29e-11,52;UBERON:0000955,9.05e-11,47;UBERON:0006238,9.05e-11,47;UBERON:0002616,3.34e-10,46;UBERON:0003080,7.89e-10,40;UBERON:0002780,1.10e-09,39;UBERON:0001890,1.10e-09,39;UBERON:0006240,1.10e-09,39;UBERON:0002020,6.30e-08,34;UBERON:0000956,1.50e-07,21;UBERON:0001869,1.50e-07,21;UBERON:0000203,1.50e-07,21;UBERON:0002410,2.71e-07,9;UBERON:0003528,3.24e-07,29;UBERON:0002791,3.24e-07,29;UBERON:0001893,3.24e-07,29|phase1_expression=13.6126520039075,0.697950815278722,3.63999391511629,1.20985684522732,3.00537437967808,4.70061961353291,3.27057696833736,7.23090611272827,13.6565060487117,14.7460651582856,1.54096171402954,2.39316476986009,6.16322627752341,8.82946064431874,0.333109761815663,0.607425802169478,0,0.788655413395594,0.959801035240171,0.84877930359606,6.20816018102809,1.68794617041505,1.04479915655574,0.95995453676044,1.60586496747019,4.59385571292016,1.29228598847722,0.430942465371778,1.52018735565099,2.52030129759931,2.43903561720835,2.54012269383853,3.07532393792285,0,5.48818077527422,3.15845826181135,5.71674197534634,6.27797446105362,3.906676722619,4.18818995179039,9.99993529652724,9.56263678941824,3.39857247121808,4.28049181116963,5.98123894195136,5.32285581268876,2.34717403304412,7.41285531693518,9.00713349211335,7.38833616482277,5.03951117851305,2.87505128729943,2.01339127269284,10.1550699881588,13.1076581665561,3.34437266846731,4.87106847895886,2.06268836910977,8.09265843438391,8.46385566835253,5.70448263155561,4.06613438482959,7.11435836888911,0.449949858640699,0,4.2628806896766,5.69240209984969,8.83702102239575,9.43575472007147,9.58542162155004,7.57169860864975,7.42692559449889,5.30084498283872,6.49201235839256,8.24271050756833,6.43453150627015,9.91042928994498,7.66124028511126,9.36999852863085,8.04506355154182,8.32537556781928,7.29278718779464,5.30447698102624,6.19038871034848,7.63991238884051,10.3120004915784,7.54569908235246,11.3703661953433,3.02904773332736,5.51672388779534,8.40607017234866,1.72084775396277,5.439770669662,1.61910957491345,1.29955283489534,2.68816132258401,2.38755514223978,3.91989741929533,2.85764605063156,2.12003744706204,11.5491604216878,10.2661181931454,20.3844191765317,21.3320010945999,1.73192832808971,0.506719730950197,1.01104889002957,3.76806803072898,3.36619248741323,12.6175818205101,7.28638372417771,4.87144765299426,7.61031140944993,9.49552635481522,14.4634109776917,11.5613264023301,9.39340877390621,4.48258006451726,3.5384422077995,8.25010934731787,6.62524555381181,5.81850303762267,1.86391761218122,10.2473278954042,11.3101221679266,2.55457055208591,3.59445373517761,3.59941638596045,2.79554499560742,7.78911324905078,5.49000723382352,5.6544458450789,12.8629996942285,12.0186264945255,8.3115217823824,7.13861557498134,11.3041693873851,4.97627882440372,4.29628689337247,5.6819301089348,6.76626303406059,7.81667155073808,7.02242306240862,8.43946979880004,14.3557013209302,11.5302348256365,12.556031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| ||
|EntrezGene=208727 | |||
|HGNC= | |||
|UniProt= | |||
|association_with_transcript=77bp_to_uc007cbg.1_5end | |||
|description=CAGE_peak_1_at_Hdac4_5end | |||
|id=chr1:94076764..94076840,- | |||
|ontology_enrichment_celltype=CL:0000540!2.30e-09!33;CL:0000047!2.30e-09!33;CL:0000031!2.30e-09!33;CL:0000404!2.30e-09!33;CL:0000221!4.96e-08!44;CL:0000133!4.96e-08!44;CL:0002319!1.25e-07!43;CL:0000107!2.71e-07!9;CL:0000393!3.93e-07!39;CL:0000211!3.93e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.29e-09,33;CL:0000047,2.29e-09,33;CL:0000031,2.29e-09,33;CL:0000404,2.29e-09,33;CL:0000221,4.95e-08,44;CL:0000133,4.95e-08,44;CL:0002319,1.25e-07,43;CL:0000107,2.71e-07,9;CL:0000393,3.92e-07,39;CL:0000211,3.92e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.36e-22!102;UBERON:0000924!1.36e-22!102;UBERON:0006601!1.36e-22!102;UBERON:0001017!3.19e-18!73;UBERON:0005743!3.19e-18!73;UBERON:0000073!2.15e-17!75;UBERON:0001016!2.15e-17!75;UBERON:0002346!9.40e-17!71;UBERON:0003075!9.40e-17!71;UBERON:0007284!9.40e-17!71;UBERON:0000153!1.11e-16!94;UBERON:0007811!7.66e-16!86;UBERON:0000033!1.17e-13!63;UBERON:0003056!1.20e-11!49;UBERON:0000955!1.40e-11!50;UBERON:0006238!1.40e-11!50;UBERON:0001049!3.30e-11!52;UBERON:0005068!3.30e-11!52;UBERON:0006241!3.30e-11!52;UBERON:0007135!3.30e-11!52;UBERON:0002616!5.28e-11!49;UBERON:0003080!7.91e-10!40;UBERON:0002780!1.10e-09!39;UBERON:0001890!1.10e-09!39;UBERON:0006240!1.10e-09!39;UBERON:0002020!6.32e-08!34;UBERON:0000956!1.50e-07!21;UBERON:0001869!1.50e-07!21;UBERON:0000203!1.50e-07!21;UBERON:0002410!2.71e-07!9;UBERON:0002791!3.25e-07!29;UBERON:0003528!3.25e-07!29;UBERON:0001893!3.25e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.12e-20,95;UBERON:0000924,2.12e-20,95;UBERON:0006601,2.12e-20,95;UBERON:0001017,3.17e-18,73;UBERON:0001016,2.14e-17,75;UBERON:0010371,1.93e-16,73;UBERON:0002346,7.26e-15,64;UBERON:0003075,7.26e-15,64;UBERON:0007284,7.26e-15,64;UBERON:0010314,7.10e-14,92;UBERON:0000073,8.21e-12,54;UBERON:0003056,1.20e-11,49;UBERON:0001049,3.29e-11,52;UBERON:0005068,3.29e-11,52;UBERON:0006241,3.29e-11,52;UBERON:0007135,3.29e-11,52;UBERON:0000955,9.05e-11,47;UBERON:0006238,9.05e-11,47;UBERON:0002616,3.34e-10,46;UBERON:0003080,7.89e-10,40;UBERON:0002780,1.10e-09,39;UBERON:0001890,1.10e-09,39;UBERON:0006240,1.10e-09,39;UBERON:0002020,6.30e-08,34;UBERON:0000956,1.50e-07,21;UBERON:0001869,1.50e-07,21;UBERON:0000203,1.50e-07,21;UBERON:0002410,2.71e-07,9;UBERON:0003528,3.24e-07,29;UBERON:0002791,3.24e-07,29;UBERON:0001893,3.24e-07,29 | |||
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| |||
|short_description=p1@Hdac4 | |||
}} |
Revision as of 21:18, 13 September 2013
Short description: | p1@Hdac4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Hdac4_5end |
Coexpression cluster: | NA |
Association with transcript: | 77bp_to_uc007cbg.1_5end |
EntrezGene: | Hdac4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.29e-09 | 33 |
neuronal stem cell | 2.29e-09 | 33 |
neuroblast | 2.29e-09 | 33 |
electrically signaling cell | 2.29e-09 | 33 |
ectodermal cell | 4.95e-08 | 44 |
neurectodermal cell | 4.95e-08 | 44 |
neural cell | 1.25e-07 | 43 |
autonomic neuron | 2.71e-07 | 9 |
electrically responsive cell | 3.92e-07 | 39 |
electrically active cell | 3.92e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 2.12e-20 | 95 |
ectoderm | 2.12e-20 | 95 |
presumptive ectoderm | 2.12e-20 | 95 |
central nervous system | 3.17e-18 | 73 |
nervous system | 2.14e-17 | 75 |
ecto-epithelium | 1.93e-16 | 73 |
neurectoderm | 7.26e-15 | 64 |
neural plate | 7.26e-15 | 64 |
presumptive neural plate | 7.26e-15 | 64 |
structure with developmental contribution from neural crest | 7.10e-14 | 92 |
regional part of nervous system | 8.21e-12 | 54 |
pre-chordal neural plate | 1.20e-11 | 49 |
neural tube | 3.29e-11 | 52 |
neural rod | 3.29e-11 | 52 |
future spinal cord | 3.29e-11 | 52 |
neural keel | 3.29e-11 | 52 |
brain | 9.05e-11 | 47 |
future brain | 9.05e-11 | 47 |
regional part of brain | 3.34e-10 | 46 |
anterior neural tube | 7.89e-10 | 40 |
regional part of forebrain | 1.10e-09 | 39 |
forebrain | 1.10e-09 | 39 |
future forebrain | 1.10e-09 | 39 |
gray matter | 6.30e-08 | 34 |
cerebral cortex | 1.50e-07 | 21 |
cerebral hemisphere | 1.50e-07 | 21 |
pallium | 1.50e-07 | 21 |
autonomic nervous system | 2.71e-07 | 9 |
brain grey matter | 3.24e-07 | 29 |
regional part of telencephalon | 3.24e-07 | 29 |
telencephalon | 3.24e-07 | 29 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.