FFCP PHASE1:Mm9::chr11:53705140..53705158,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=20520|HGNC=|MCL_coexpression_id=24|UniProt=Q9Z0E8|association_with_transcript=3bp_to_ENSMUST00000019044_5end|description=CAGE_peak_1_at_Slc22a5_5end|id=chr11:53705140..53705158,-|ontology_enrichment_celltype=CL:0000066!7.05e-07!25|ontology_enrichment_celltype_v019_2=CL:0000066,3.95e-08,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!1.33e-09!15;UBERON:0001242!2.04e-08!13;UBERON:0000060!2.04e-08!13;UBERON:0001262!2.04e-08!13;UBERON:0004786!2.04e-08!13;UBERON:0004923!3.61e-07!24|ontology_enrichment_uberon_v019_2=UBERON:0000160,9.95e-14,31;UBERON:0000344,1.82e-10,15;UBERON:0001242,3.74e-09,13;UBERON:0001262,3.74e-09,13;UBERON:0004786,3.74e-09,13;UBERON:0005409,7.96e-09,47;UBERON:0004923,7.97e-08,24|phase1_expression=1.60148847104794,303.259629238605,382.6543603266,193.577095236371,267.979215521296,43.3128521532676,31.7713191209915,24.9208014242242,5.20918271961167,5.14941957908386,0.34243593645101,0.319088635981346,0.684802919724823,1.04904482902797,1.66554880907831,0.202475267389826,0,1.10411757875383,1.37114433605739,0.84877930359606,31.2959307755937,0.297872853602656,1.04479915655574,48.3177116836088,46.1112654945012,214.762754579018,115.013452974473,100.194123198938,69.5485715210328,63.0075324399827,45.0112936630269,1.27006134691926,1.84519436275371,15.8481681015439,3.46621943701529,4.65457007003779,12.0459920194798,1.25559489221072,0,0.523523743973798,0.588231488031014,0,0,9.19046771221714,8.92116994731728,5.50640256485045,19.559783608701,2.61630187656536,8.34807494390993,10.8880743481599,6.57936181639204,1.43752564364972,2.18117387875057,4.35217285206807,3.02484419228218,0.771778308107841,0.85960031981627,0.515672092277442,0.202316460859598,0,0.633831403506179,3.38844532069132,5.33576877666684,0.899899717281399,0,1.4209602298922,1.79760066311043,3.45796474789399,0.103689612308478,0.270011876663381,0,1.14260393761521,1.54607978666129,0,0.0958454710182364,0,2.20231761998777,1.14918604276669,0.614426133024974,0.527545150920775,0.640413505216868,0.52091337055676,0.558365998002762,0.56276261003168,1.37518422999129,0.294628585473668,0.711858403995515,0,0.530083353332288,0.453429360640713,29.5661778475711,4.30211938490693,6.11974200336975,7.01614149129162,9.74664626171504,26.4335863387428,15.1679973742292,0.681721290312231,0.519572009205738,2.12003744706204,5.7745802108439,2.56652954828636,0,0,1.08245520505607,1.26679932737549,1.01104889002957,63.6004210035164,2.33044095282455,10.984718290797,1.38788261412909,2.43572382649713,4.84292544237723,2.26083960828934,3.17489509266403,6.53466274914312,38.8096099342967,25.4494868179045,0.884610551949874,0.970601099684455,1.76673214768315,0,13.0474232852686,0.585561594023094,0.83778682725382,27.3339049073193,1.31796636956512,1.19980546198682,0.889491589511453,0.898743836428936,1.37250180845588,0,0.695297280769106,0.255715457330331,0.41557608911912,0.486723789203273,0.611036183101898,2.98576729464223,24.7668303265001,14.7309299120532,0,0.459804208866946,0.720248519221397,0.30140963567143,0.816437989815934,1.15302348256365,0.562210347358373,6.20888089773638,0.215567992932842,0.378212160335639,0.175951124163949,0,0.556094498451196,0.348252166522167,0.205782136407943,0.995171334092466,0,0.257347907114715,1.70498099637356,0.414251545071004,0.938104239924385,0.180062061461015,0.23674473558521,0,0.154267112887378,0.232533944750408,0.804820204198858,0.934122738937356,0.822799249567402,2.95501435342371,5.83695428730161,6.72519942156529,1.97595103761946,5.50246316917524,1.47202963994889,0.617427674275707,166.20064784085,46.5432997327838,1.06644125267617,0.696710015581316,0.644337306610467,1.61346819698674,3.55804870151792,11.4135375667535,21.8283368310475,29.97520975977,19.604146286421,16.5133871794155,20.2762650603885,35.9527763461689,25.5042898852139,37.438559371821,0.379335801906163,0.114248512609729,1.1270773567308,2.03651327845314,4.07300223052014,7.78507600782536,43.5699740786133,65.9817361468822,70.3354300729359,77.7402132707343,17.1942523710546,0.166845105716094,0,0.224862112384854,0.202860121388503,0,0,0.287696137450811,9.40384315295205,3.56929837144506,1.43768206527355,4.83783231969054,3.12037673114561,2.77836765741823,3.04975602987251,2.8946611281802,2.40179147216586,0.37898282354097,0.325929952884052,0.169745085775188,0.704070744865506,0.335012514883631,0.714130922658041,4.29294025287157,0.788175720530955,0.221464689648775,1.2756381492599,4.58817281204066,3.7990696010497,6.94315481191256,0,0.54390568381871,2.45882136509518,2.75936746304733,1.28440471990234,0.703270119553219,0.983609672260053,2.52470927204373,0.94652465824877,0,0.430846795465598,1.19484398976276,0.668396022247182,0.566153061577665,0.809621403349789,1.75353514746787,0.395287777946524,0.642642632843614,6.67118400478862,0.890328018336276,0.977321756121456,5.27904393512113,0,0.971122544619926,0,0.188605079755898,0.295301892880773,0,7.75284879504663,0.727067458955011,0.356497378384721,0.632073515871632,0,1.03135543248187,1.02131881726136,0.900305470156551,0.646793418913773,2.57204442037911,0.886701168211368,2.49716344642899,2.30368628842969,1.8267896946876,63.8307045933292,52.958017715955,1.98475558249466,4.78170133530292,1.13025098687134,1.02531972377865,2.50681922406587,9.02774948597837,23.3184669303881,0.741701208042039,0.512612642393558,0.619160603889667,0.370389054739423,1.13021074202815,0.27338845544205,1.14389086603261,0.509935289981566,1.39951452323658,1.52019971184866,4.77335309007557,0.158167996790568,0.406638934253697,0.540026704109006,0.836353184057875,0.436725127492355,5.93403124093211,6.11635572367486,4.4498510137285,33.4406631092826,1.24267862617385,3.38215763210514,2.0932316446157,2.31641886639937,3.30567020184881,2.45403664607689,2.02747350588934,0.938857909166032,1.3020438484395,1.8874681996628,3.8653459332161,9.79302021276743,0.316011120628178,0.608175645870493,0.205421914329655,0.51968329191118,0.895133478337407,0.596044064343795,0.240390899039938,0.443068581523732,0.201932899896295,0.533447646584999,0.907435666231565,0.682205165178267,0.384847366561318,0.701261413089414,1.36038230169127,0.887943813496259,0.269141569828427,1.34307693091263,4.44336066274038,9.94717119891265,5.12824547948342,6.85978813053011,1.50471631210609,0.564751842617067,2.76195141904306,0.572895513439397,1.20297227640581,0.685082519770642,0.755393897389701,0,0,0.906284817968409,0,0,0.399024873401031,0.341467211508268,0.243106717068294,0.209613162627982,0.367687016900028,0.666740183404846,0.206035057238894,1.28367683836726,0.758091635291392,0.50695859978048,1.50901073108861,1.49826411951812,1.60062881012173,1.55075766180156,0.952587382566147,1.85414921511769,0.77163688185482,1.23625770240992,1.32479028120958,2.05721551431249,3.01708870470874,1.1921809497366,2.32554266611726,1.41164070622996,0.676916863133412,0.548783918618318,1.05227884575137,1.08643291076689,1.68342681497322,0.711810108745045,0.985044823755635,1.63692417267876,1.23949472948773,1.15743966588685,0.749431733813838,1.16965804222704,4.08255002691767,6.50380329034067,3.30887128679273,3.94175320554716|short_description=p1@Slc22a5}} | ||
|EntrezGene=20520 | |||
|HGNC= | |||
|MCL_coexpression_id=24 | |||
|UniProt=Q9Z0E8 | |||
|association_with_transcript=3bp_to_ENSMUST00000019044_5end | |||
|description=CAGE_peak_1_at_Slc22a5_5end | |||
|id=chr11:53705140..53705158,- | |||
|ontology_enrichment_celltype=CL:0000066!7.05e-07!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.95e-08,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!1.33e-09!15;UBERON:0001242!2.04e-08!13;UBERON:0000060!2.04e-08!13;UBERON:0001262!2.04e-08!13;UBERON:0004786!2.04e-08!13;UBERON:0004923!3.61e-07!24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,9.95e-14,31;UBERON:0000344,1.82e-10,15;UBERON:0001242,3.74e-09,13;UBERON:0001262,3.74e-09,13;UBERON:0004786,3.74e-09,13;UBERON:0005409,7.96e-09,47;UBERON:0004923,7.97e-08,24 | |||
|phase1_expression=1.60148847104794,303.259629238605,382.6543603266,193.577095236371,267.979215521296,43.3128521532676,31.7713191209915,24.9208014242242,5.20918271961167,5.14941957908386,0.34243593645101,0.319088635981346,0.684802919724823,1.04904482902797,1.66554880907831,0.202475267389826,0,1.10411757875383,1.37114433605739,0.84877930359606,31.2959307755937,0.297872853602656,1.04479915655574,48.3177116836088,46.1112654945012,214.762754579018,115.013452974473,100.194123198938,69.5485715210328,63.0075324399827,45.0112936630269,1.27006134691926,1.84519436275371,15.8481681015439,3.46621943701529,4.65457007003779,12.0459920194798,1.25559489221072,0,0.523523743973798,0.588231488031014,0,0,9.19046771221714,8.92116994731728,5.50640256485045,19.559783608701,2.61630187656536,8.34807494390993,10.8880743481599,6.57936181639204,1.43752564364972,2.18117387875057,4.35217285206807,3.02484419228218,0.771778308107841,0.85960031981627,0.515672092277442,0.202316460859598,0,0.633831403506179,3.38844532069132,5.33576877666684,0.899899717281399,0,1.4209602298922,1.79760066311043,3.45796474789399,0.103689612308478,0.270011876663381,0,1.14260393761521,1.54607978666129,0,0.0958454710182364,0,2.20231761998777,1.14918604276669,0.614426133024974,0.527545150920775,0.640413505216868,0.52091337055676,0.558365998002762,0.56276261003168,1.37518422999129,0.294628585473668,0.711858403995515,0,0.530083353332288,0.453429360640713,29.5661778475711,4.30211938490693,6.11974200336975,7.01614149129162,9.74664626171504,26.4335863387428,15.1679973742292,0.681721290312231,0.519572009205738,2.12003744706204,5.7745802108439,2.56652954828636,0,0,1.08245520505607,1.26679932737549,1.01104889002957,63.6004210035164,2.33044095282455,10.984718290797,1.38788261412909,2.43572382649713,4.84292544237723,2.26083960828934,3.17489509266403,6.53466274914312,38.8096099342967,25.4494868179045,0.884610551949874,0.970601099684455,1.76673214768315,0,13.0474232852686,0.585561594023094,0.83778682725382,27.3339049073193,1.31796636956512,1.19980546198682,0.889491589511453,0.898743836428936,1.37250180845588,0,0.695297280769106,0.255715457330331,0.41557608911912,0.486723789203273,0.611036183101898,2.98576729464223,24.7668303265001,14.7309299120532,0,0.459804208866946,0.720248519221397,0.30140963567143,0.816437989815934,1.15302348256365,0.562210347358373,6.20888089773638,0.215567992932842,0.378212160335639,0.175951124163949,0,0.556094498451196,0.348252166522167,0.205782136407943,0.995171334092466,0,0.257347907114715,1.70498099637356,0.414251545071004,0.938104239924385,0.180062061461015,0.23674473558521,0,0.154267112887378,0.232533944750408,0.804820204198858,0.934122738937356,0.822799249567402,2.95501435342371,5.83695428730161,6.72519942156529,1.97595103761946,5.50246316917524,1.47202963994889,0.617427674275707,166.20064784085,46.5432997327838,1.06644125267617,0.696710015581316,0.644337306610467,1.61346819698674,3.55804870151792,11.4135375667535,21.8283368310475,29.97520975977,19.604146286421,16.5133871794155,20.2762650603885,35.9527763461689,25.5042898852139,37.438559371821,0.379335801906163,0.114248512609729,1.1270773567308,2.03651327845314,4.07300223052014,7.78507600782536,43.5699740786133,65.9817361468822,70.3354300729359,77.7402132707343,17.1942523710546,0.166845105716094,0,0.224862112384854,0.202860121388503,0,0,0.287696137450811,9.40384315295205,3.56929837144506,1.43768206527355,4.83783231969054,3.12037673114561,2.77836765741823,3.04975602987251,2.8946611281802,2.40179147216586,0.37898282354097,0.325929952884052,0.169745085775188,0.704070744865506,0.335012514883631,0.714130922658041,4.29294025287157,0.788175720530955,0.221464689648775,1.2756381492599,4.58817281204066,3.7990696010497,6.94315481191256,0,0.54390568381871,2.45882136509518,2.75936746304733,1.28440471990234,0.703270119553219,0.983609672260053,2.52470927204373,0.94652465824877,0,0.430846795465598,1.19484398976276,0.668396022247182,0.566153061577665,0.809621403349789,1.75353514746787,0.395287777946524,0.642642632843614,6.67118400478862,0.890328018336276,0.977321756121456,5.27904393512113,0,0.971122544619926,0,0.188605079755898,0.295301892880773,0,7.75284879504663,0.727067458955011,0.356497378384721,0.632073515871632,0,1.03135543248187,1.02131881726136,0.900305470156551,0.646793418913773,2.57204442037911,0.886701168211368,2.49716344642899,2.30368628842969,1.8267896946876,63.8307045933292,52.958017715955,1.98475558249466,4.78170133530292,1.13025098687134,1.02531972377865,2.50681922406587,9.02774948597837,23.3184669303881,0.741701208042039,0.512612642393558,0.619160603889667,0.370389054739423,1.13021074202815,0.27338845544205,1.14389086603261,0.509935289981566,1.39951452323658,1.52019971184866,4.77335309007557,0.158167996790568,0.406638934253697,0.540026704109006,0.836353184057875,0.436725127492355,5.93403124093211,6.11635572367486,4.4498510137285,33.4406631092826,1.24267862617385,3.38215763210514,2.0932316446157,2.31641886639937,3.30567020184881,2.45403664607689,2.02747350588934,0.938857909166032,1.3020438484395,1.8874681996628,3.8653459332161,9.79302021276743,0.316011120628178,0.608175645870493,0.205421914329655,0.51968329191118,0.895133478337407,0.596044064343795,0.240390899039938,0.443068581523732,0.201932899896295,0.533447646584999,0.907435666231565,0.682205165178267,0.384847366561318,0.701261413089414,1.36038230169127,0.887943813496259,0.269141569828427,1.34307693091263,4.44336066274038,9.94717119891265,5.12824547948342,6.85978813053011,1.50471631210609,0.564751842617067,2.76195141904306,0.572895513439397,1.20297227640581,0.685082519770642,0.755393897389701,0,0,0.906284817968409,0,0,0.399024873401031,0.341467211508268,0.243106717068294,0.209613162627982,0.367687016900028,0.666740183404846,0.206035057238894,1.28367683836726,0.758091635291392,0.50695859978048,1.50901073108861,1.49826411951812,1.60062881012173,1.55075766180156,0.952587382566147,1.85414921511769,0.77163688185482,1.23625770240992,1.32479028120958,2.05721551431249,3.01708870470874,1.1921809497366,2.32554266611726,1.41164070622996,0.676916863133412,0.548783918618318,1.05227884575137,1.08643291076689,1.68342681497322,0.711810108745045,0.985044823755635,1.63692417267876,1.23949472948773,1.15743966588685,0.749431733813838,1.16965804222704,4.08255002691767,6.50380329034067,3.30887128679273,3.94175320554716 | |||
|short_description=p1@Slc22a5 | |||
}} | |||
Revision as of 19:58, 12 September 2013
| Short description: | p1@Slc22a5 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Slc22a5_5end |
| Coexpression cluster: | MCL_coexpression_mm9:24 |
| Association with transcript: | 3bp_to_ENSMUST00000019044_5end |
| EntrezGene: | Slc22a5 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 3.95e-08 | 25 |
| Ontology term | p-value | n |
|---|---|---|
| intestine | 9.95e-14 | 31 |
| mucosa | 1.82e-10 | 15 |
| intestinal mucosa | 3.74e-09 | 13 |
| wall of intestine | 3.74e-09 | 13 |
| gastrointestinal system mucosa | 3.74e-09 | 13 |
| gastrointestinal system | 7.96e-09 | 47 |
| organ component layer | 7.97e-08 | 24 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
