FFCP PHASE1:Mm9::chr5:121459391..121459403,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=19894|HGNC=|MCL_coexpression_id=1|UniProt=P47708|association_with_transcript=123bp_to_ENSMUST00000079204,NM_011286,uc008zil.1_5end|description=CAGE_peak_3_at_Rph3a_5end|id=chr5:121459391..121459403,-|ontology_enrichment_celltype=CL:0000117!2.23e-16!23;CL:0000337!2.23e-16!23;CL:0000540!2.26e-11!33;CL:0000047!2.26e-11!33;CL:0000031!2.26e-11!33;CL:0000404!2.26e-11!33;CL:0000393!1.70e-08!39;CL:0000211!1.70e-08!39;CL:0000221!1.75e-07!44;CL:0000133!1.75e-07!44;CL:0002319!4.55e-07!43|ontology_enrichment_celltype_v019_2=CL:0000117,1.54e-13,23;CL:0000337,1.54e-13,23;CL:0000540,1.73e-08,33;CL:0000047,1.73e-08,33;CL:0000031,1.73e-08,33;CL:0000404,1.73e-08,33;CL:0002610,5.13e-07,3;CL:0002614,5.13e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!2.58e-34!71;UBERON:0003075!2.58e-34!71;UBERON:0007284!2.58e-34!71;UBERON:0000033!5.30e-34!63;UBERON:0001049!1.14e-30!52;UBERON:0005068!1.14e-30!52;UBERON:0006241!1.14e-30!52;UBERON:0007135!1.14e-30!52;UBERON:0001017!1.77e-29!73;UBERON:0005743!1.77e-29!73;UBERON:0000955!4.33e-29!50;UBERON:0006238!4.33e-29!50;UBERON:0004121!5.93e-29!102;UBERON:0000924!5.93e-29!102;UBERON:0006601!5.93e-29!102;UBERON:0000073!3.42e-28!75;UBERON:0001016!3.42e-28!75;UBERON:0002616!3.84e-28!49;UBERON:0003056!2.88e-27!49;UBERON:0002020!9.37e-24!34;UBERON:0003080!2.15e-22!40;UBERON:0002780!2.38e-21!39;UBERON:0001890!2.38e-21!39;UBERON:0006240!2.38e-21!39;UBERON:0007811!6.08e-21!86;UBERON:0002791!1.53e-19!29;UBERON:0003528!1.53e-19!29;UBERON:0001893!1.53e-19!29;UBERON:0000153!1.15e-17!94;UBERON:0000956!1.90e-14!21;UBERON:0001869!1.90e-14!21;UBERON:0000203!1.90e-14!21;UBERON:0002619!2.39e-12!17;UBERON:0002021!1.82e-11!10;UBERON:0000411!1.82e-11!10;UBERON:0001950!1.82e-11!10;UBERON:0003076!1.32e-08!12;UBERON:0003057!1.32e-08!12;UBERON:0002298!1.05e-07!6|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.97e-36,54;UBERON:0001017,3.49e-34,73;UBERON:0001016,4.85e-33,75;UBERON:0002346,5.04e-33,64;UBERON:0003075,5.04e-33,64;UBERON:0007284,5.04e-33,64;UBERON:0001049,5.86e-33,52;UBERON:0005068,5.86e-33,52;UBERON:0006241,5.86e-33,52;UBERON:0007135,5.86e-33,52;UBERON:0004121,1.09e-30,95;UBERON:0000924,1.09e-30,95;UBERON:0006601,1.09e-30,95;UBERON:0010371,6.33e-28,73;UBERON:0000955,1.58e-27,47;UBERON:0006238,1.58e-27,47;UBERON:0002020,6.12e-27,34;UBERON:0002616,4.72e-26,46;UBERON:0003056,1.10e-22,49;UBERON:0003528,5.58e-22,29;UBERON:0002791,5.58e-22,29;UBERON:0001893,5.58e-22,29;UBERON:0003080,1.20e-20,40;UBERON:0010314,1.95e-20,92;UBERON:0002021,2.04e-20,10;UBERON:0000411,2.04e-20,10;UBERON:0001950,2.04e-20,10;UBERON:0002780,4.40e-19,39;UBERON:0001890,4.40e-19,39;UBERON:0006240,4.40e-19,39;UBERON:0002619,8.38e-16,17;UBERON:0000956,1.03e-14,21;UBERON:0001869,1.03e-14,21;UBERON:0000203,1.03e-14,21;UBERON:0003076,3.37e-13,12;UBERON:0003057,3.37e-13,12;UBERON:0000025,7.31e-11,114;UBERON:0004111,1.17e-09,122;UBERON:0002950,5.38e-09,4;UBERON:0001891,5.38e-09,4;UBERON:0009616,5.38e-09,4;UBERON:0010286,5.38e-09,4;UBERON:0002420,1.66e-08,8;UBERON:0007245,1.66e-08,8;UBERON:0010009,1.66e-08,8;UBERON:0010011,1.66e-08,8;UBERON:0000454,1.66e-08,8;UBERON:0002240,3.94e-08,6;UBERON:0005174,3.94e-08,6;UBERON:0001137,3.94e-08,6;UBERON:0011216,2.16e-07,194;UBERON:0002038,5.13e-07,3;UBERON:0009663,5.13e-07,3;UBERON:0009661,5.13e-07,3;UBERON:0000125,5.13e-07,3;UBERON:0002308,5.13e-07,3;UBERON:0004684,5.13e-07,3;UBERON:0002275,5.13e-07,3;UBERON:0000483,6.44e-07,174;UBERON:0000119,9.52e-07,176|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.46625541438102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41621522601718,2.11596391708813,1.26766280701236,0,0,0,0,0,0,0,0.103689612308478,0.135005938331691,0.420649922702764,1.99955689082663,2.65042249141936,0.979926393719632,0.191690942036473,0.919218786610021,7.70811166995721,10.3426743849002,12.1349161272432,0.659431438650969,1.28082701043374,0,14.7966989470732,9.00420176050688,4.73674568108111,2.65165726926301,1.99320353118744,0.931997229126503,0,0,0,0,0,0,0,0,0.842666520790511,0,0,0,0.422530259330042,0,0,0,0,0,0,0.22836775943812,0,0.29688427812965,0,0,0.230615497256059,0,0.117588707135705,0.125666591329675,0,0,0,0,0,0,0,14.3462590535658,19.2690970268379,0,0,0,0,14.0803201040533,9.60751265919116,1.88481528169297,17.3824320192276,8.95004100656157,12.0517065844545,10.8701646255398,0,0,0,0.210441855886474,0,0.459804208866946,0.360124259610698,0.90422890701429,2.04109497453984,2.0498195245576,1.12442069471675,2.32833033665114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.88362758251398,1.23485534855141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.4266213885228,16.175212749724,0,0,0,0.390438744296638,0,0,0,0,0,0,0,3.21321316421807,0,0,0,0,0,0,0,0,0,0.307435147943927,0,0,0,0,0,0,0,0,0,0.214337035031592,0.532020700926821,0.356737635204141,0.164549020602121,0.608929898229199,0,0,0,0,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| ||
|EntrezGene=19894 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=P47708 | |||
|association_with_transcript=123bp_to_ENSMUST00000079204,NM_011286,uc008zil.1_5end | |||
|description=CAGE_peak_3_at_Rph3a_5end | |||
|id=chr5:121459391..121459403,- | |||
|ontology_enrichment_celltype=CL:0000117!2.23e-16!23;CL:0000337!2.23e-16!23;CL:0000540!2.26e-11!33;CL:0000047!2.26e-11!33;CL:0000031!2.26e-11!33;CL:0000404!2.26e-11!33;CL:0000393!1.70e-08!39;CL:0000211!1.70e-08!39;CL:0000221!1.75e-07!44;CL:0000133!1.75e-07!44;CL:0002319!4.55e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.54e-13,23;CL:0000337,1.54e-13,23;CL:0000540,1.73e-08,33;CL:0000047,1.73e-08,33;CL:0000031,1.73e-08,33;CL:0000404,1.73e-08,33;CL:0002610,5.13e-07,3;CL:0002614,5.13e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!2.58e-34!71;UBERON:0003075!2.58e-34!71;UBERON:0007284!2.58e-34!71;UBERON:0000033!5.30e-34!63;UBERON:0001049!1.14e-30!52;UBERON:0005068!1.14e-30!52;UBERON:0006241!1.14e-30!52;UBERON:0007135!1.14e-30!52;UBERON:0001017!1.77e-29!73;UBERON:0005743!1.77e-29!73;UBERON:0000955!4.33e-29!50;UBERON:0006238!4.33e-29!50;UBERON:0004121!5.93e-29!102;UBERON:0000924!5.93e-29!102;UBERON:0006601!5.93e-29!102;UBERON:0000073!3.42e-28!75;UBERON:0001016!3.42e-28!75;UBERON:0002616!3.84e-28!49;UBERON:0003056!2.88e-27!49;UBERON:0002020!9.37e-24!34;UBERON:0003080!2.15e-22!40;UBERON:0002780!2.38e-21!39;UBERON:0001890!2.38e-21!39;UBERON:0006240!2.38e-21!39;UBERON:0007811!6.08e-21!86;UBERON:0002791!1.53e-19!29;UBERON:0003528!1.53e-19!29;UBERON:0001893!1.53e-19!29;UBERON:0000153!1.15e-17!94;UBERON:0000956!1.90e-14!21;UBERON:0001869!1.90e-14!21;UBERON:0000203!1.90e-14!21;UBERON:0002619!2.39e-12!17;UBERON:0002021!1.82e-11!10;UBERON:0000411!1.82e-11!10;UBERON:0001950!1.82e-11!10;UBERON:0003076!1.32e-08!12;UBERON:0003057!1.32e-08!12;UBERON:0002298!1.05e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.97e-36,54;UBERON:0001017,3.49e-34,73;UBERON:0001016,4.85e-33,75;UBERON:0002346,5.04e-33,64;UBERON:0003075,5.04e-33,64;UBERON:0007284,5.04e-33,64;UBERON:0001049,5.86e-33,52;UBERON:0005068,5.86e-33,52;UBERON:0006241,5.86e-33,52;UBERON:0007135,5.86e-33,52;UBERON:0004121,1.09e-30,95;UBERON:0000924,1.09e-30,95;UBERON:0006601,1.09e-30,95;UBERON:0010371,6.33e-28,73;UBERON:0000955,1.58e-27,47;UBERON:0006238,1.58e-27,47;UBERON:0002020,6.12e-27,34;UBERON:0002616,4.72e-26,46;UBERON:0003056,1.10e-22,49;UBERON:0003528,5.58e-22,29;UBERON:0002791,5.58e-22,29;UBERON:0001893,5.58e-22,29;UBERON:0003080,1.20e-20,40;UBERON:0010314,1.95e-20,92;UBERON:0002021,2.04e-20,10;UBERON:0000411,2.04e-20,10;UBERON:0001950,2.04e-20,10;UBERON:0002780,4.40e-19,39;UBERON:0001890,4.40e-19,39;UBERON:0006240,4.40e-19,39;UBERON:0002619,8.38e-16,17;UBERON:0000956,1.03e-14,21;UBERON:0001869,1.03e-14,21;UBERON:0000203,1.03e-14,21;UBERON:0003076,3.37e-13,12;UBERON:0003057,3.37e-13,12;UBERON:0000025,7.31e-11,114;UBERON:0004111,1.17e-09,122;UBERON:0002950,5.38e-09,4;UBERON:0001891,5.38e-09,4;UBERON:0009616,5.38e-09,4;UBERON:0010286,5.38e-09,4;UBERON:0002420,1.66e-08,8;UBERON:0007245,1.66e-08,8;UBERON:0010009,1.66e-08,8;UBERON:0010011,1.66e-08,8;UBERON:0000454,1.66e-08,8;UBERON:0002240,3.94e-08,6;UBERON:0005174,3.94e-08,6;UBERON:0001137,3.94e-08,6;UBERON:0011216,2.16e-07,194;UBERON:0002038,5.13e-07,3;UBERON:0009663,5.13e-07,3;UBERON:0009661,5.13e-07,3;UBERON:0000125,5.13e-07,3;UBERON:0002308,5.13e-07,3;UBERON:0004684,5.13e-07,3;UBERON:0002275,5.13e-07,3;UBERON:0000483,6.44e-07,174;UBERON:0000119,9.52e-07,176 | |||
|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.46625541438102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41621522601718,2.11596391708813,1.26766280701236,0,0,0,0,0,0,0,0.103689612308478,0.135005938331691,0.420649922702764,1.99955689082663,2.65042249141936,0.979926393719632,0.191690942036473,0.919218786610021,7.70811166995721,10.3426743849002,12.1349161272432,0.659431438650969,1.28082701043374,0,14.7966989470732,9.00420176050688,4.73674568108111,2.65165726926301,1.99320353118744,0.931997229126503,0,0,0,0,0,0,0,0,0.842666520790511,0,0,0,0.422530259330042,0,0,0,0,0,0,0.22836775943812,0,0.29688427812965,0,0,0.230615497256059,0,0.117588707135705,0.125666591329675,0,0,0,0,0,0,0,14.3462590535658,19.2690970268379,0,0,0,0,14.0803201040533,9.60751265919116,1.88481528169297,17.3824320192276,8.95004100656157,12.0517065844545,10.8701646255398,0,0,0,0.210441855886474,0,0.459804208866946,0.360124259610698,0.90422890701429,2.04109497453984,2.0498195245576,1.12442069471675,2.32833033665114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.88362758251398,1.23485534855141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.4266213885228,16.175212749724,0,0,0,0.390438744296638,0,0,0,0,0,0,0,3.21321316421807,0,0,0,0,0,0,0,0,0,0.307435147943927,0,0,0,0,0,0,0,0,0,0.214337035031592,0.532020700926821,0.356737635204141,0.164549020602121,0.608929898229199,0,0,0,0,0,0,0,0,0,21.3239097312086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147689527174577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.1655331671072,7.82552902062201,8.02053718815155,4.29632955859219,13.7016503954128,10.5755145634558,14.8504950050997,13.0593148935024,15.8599843144472,15.0150490408028,0,0,0,0.243106717068294,0.419226325255965,0.367687016900028,0,0.412070114477788,0.64183841918363,0,0.50695859978048,0.188626341386076,0.280924522409647,0.256100609619477,0.114870937911227,0.476293691283074,0,0,0,0.441596760403192,1.02860775715625,0,0.476872379894642,0,0.188218760830661,0.423073039458382,0,0.263069711437843,0.271608227691724,0.561142271657738,0.593175090620871,0.689531376628944,0.409231043169689,0,0.192906610981141,0.499621155875892,0.233931608445408,0.429742108096597,0.382576664137687,0.441182838239031,0.463735671240843 | |||
|short_description=p3@Rph3a | |||
}} |
Revision as of 06:15, 14 September 2013
Short description: | p3@Rph3a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Rph3a_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 123bp_to_ENSMUST00000079204, NM_011286, uc008zil.1_5end |
EntrezGene: | Rph3a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.54e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.54e-13 | 23 |
neuron | 1.73e-08 | 33 |
neuronal stem cell | 1.73e-08 | 33 |
neuroblast | 1.73e-08 | 33 |
electrically signaling cell | 1.73e-08 | 33 |
raphe nuclei neuron | 5.13e-07 | 3 |
neuron of the substantia nigra | 5.13e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.