FFCP PHASE1:Mm9::chr3:95539830..95539861,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=72|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr3:95539830..95539861,+|id=chr3:95539830..95539861,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000333,4.11e-15,10;CL:0000095,4.11e-15,10;CL:0000243,4.11e-15,10;CL:0000123,4.11e-15,10;CL:0000125,4.11e-15,10;CL:0000030,4.11e-15,10;CL:0000339,4.11e-15,10;CL:0002453,2.20e-11,8;CL:0000068,9.40e-10,3;CL:0002202,9.40e-10,3;CL:0000069,9.40e-10,3;CL:0002632,9.40e-10,3;CL:0002368,9.40e-10,3;CL:0000307,9.40e-10,3;CL:0000377,9.40e-10,3;CL:0002092,3.31e-09,3;CL:0002540,3.31e-09,3;CL:0000219,4.18e-09,54;CL:0000128,2.84e-07,6;CL:0000126,2.84e-07,6;CL:0000127,2.84e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000926!5.61e-10!193;UBERON:0004120!5.61e-10!193;UBERON:0006603!5.61e-10!193;UBERON:0009569!3.80e-09!66;UBERON:0002100!1.35e-08!98;UBERON:0005256!4.20e-08!47;UBERON:0005172!5.48e-08!49;UBERON:0005173!5.48e-08!49;UBERON:0002417!5.48e-08!49;UBERON:0000916!5.48e-08!49;UBERON:0003104!1.67e-07!131;UBERON:0009142!1.67e-07!131;UBERON:0005177!4.20e-07!85|ontology_enrichment_uberon_v019_2=UBERON:0003126,9.40e-10,3;UBERON:0001005,9.40e-10,3;UBERON:0007196,9.40e-10,3;UBERON:0001558,9.40e-10,3|phase1_expression=0,0,0,0,0,0,0,2.1950964985068,0.140788722151667,0,0.171217968225505,0,0,0.611942816932982,0,0,0,0,0,0,0,0.0992909512008853,0,0.159992422793407,0,0,0,0,0,0,0,0.635030673459631,0,0,0,0,0,0,0,0,0,0,0,0.629484089877886,0.811015449756117,3.48738829107195,5.47673941043627,0.436050312760893,2.85592037554813,1.55543919259427,1.25987779462826,0,0,0,0,0.257259436035947,1.14613375975503,2.06268836910977,0,0,0,0.677689064138264,0,2.2497492932035,10.8775299882367,4.2628806896766,1.79760066311043,1.92109152660777,0,0,0,0,0,0,0.0958454710182364,0,0,0,0,0,0.0914876436024097,0,0,0,0,0,0.142371680799103,0,1.06016670666458,1.058001841495,0.579728977403356,5.16254326188832,0.679971333707751,0.539703191637817,0.649776417447669,0,0.421333260395256,1.87473354835864,2.33807404142582,3.5333957451034,0,0,0,0,22.0820861831438,28.1229450677359,24.7706978057244,0.5709193985953,0,2.9688427812965,0.867426633830679,0.304465478312141,1.15307748628029,1.3565037649736,0.587943535678524,0.376999773989026,0.741584903203122,0.144599356919912,0,0.323533699894818,0.220841518460394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.916554274652847,0.248813941220186,0,0.210441855886474,0,0.229902104433473,0.180062129805349,0.150704817835715,0.204109497453984,0,0.0937017245597288,0,0,0,0,0,0,0.348252166522167,0.411564272815887,0.398068533636986,0,0,0,0.207125772535502,0.234526059981096,0,0.710234206755631,0,0,0.232533944750408,0,0.350296027101508,0.329119699826961,0.32833492815819,0.405344047729279,0,0.439100230582101,0,0.210289948564127,0,0,0,0,0,0.257734922644187,0,0,0,0.474529061544512,0.164698954724011,0.502670417600539,0.198956472041151,0.38992817423824,0,0.216138049874694,0.597423819763102,0.569003702859245,0.114248512609729,1.1270773567308,0.203651327845314,0.193952487167626,0.210407459670956,0.126473074248515,0.885660887877613,0.627994911365499,0.246794327843601,2.96452627087149,0,0.196558995113203,0,0,0,0,0.575392274901621,0.324270453550071,0.274561413188081,1.43768206527355,1.86070473834252,0,0.757736633841335,0.179397413521912,0.964887042726734,0,0.189491411770485,0.162964976442026,0,0,0,0.238043640886014,0,0.157635144106191,0.221464689648775,0,0.491589944147214,0.345369963731791,1.01254341007058,0,0.54390568381871,0,0,0.160550589987792,0,0.327869890753351,0,0,0,0,0,0,0,0,0,0,0,0.709700426041343,0.178065603667255,1.14020871547503,0.164970122972535,1.32745138339963,0,0,0,0,0.307435147943927,0.258428293168221,0,0,0.316036757935816,0,0,0,0,0.129358683782755,0,0,0,0.164549020602121,0.304464949114599,0.704015124191131,0.847328283455281,0.220528398054962,0,0.161464426695906,0.0603129249281559,0.358117032009409,0,0,0.18542530201051,0,0,0.185194527369712,0,0.136694227721025,0.457556346413045,0,0,0,0,0.316335993581135,0,0,0.418176592028937,0.87345025498471,0.404593039154462,0.247960367176008,0.26175594198403,0.129614973291793,0,0,0,0,0,0.129159823477731,0,0,0.13020438484395,0.314578033277133,0,0.288030006257865,0.316011120628178,0,0,0.129920822977795,0,0,0.120195449519969,0,0,0.0762068066549998,0.100826185136841,0,0,0,0.680191150845634,0,0,0.167884616364078,1.15913756419314,1.12609485270709,0.183151624267265,3.64426244434412,0,0,0,0,0.171853182343688,0,0,0,0,0,0,0,0,0.170733605754134,0,0,0,0,0,0,0,0,0,0,0.128050304809739,0.0574354689556133,0,0.231768651889711,0,0.412085900803307,0.147198920134397,0,0.177475806159338,0,0.145346416632329,0,0.0846146078916765,0,0,0.271608227691724,0,0,0,0,0,0,0,0,0.214871054048298,0.382576664137687,0.220591419119515,0|short_description=p@chr3:95539830..95539861,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=72 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr3:95539830..95539861,+ | |||
|id=chr3:95539830..95539861,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000333,4.11e-15,10;CL:0000095,4.11e-15,10;CL:0000243,4.11e-15,10;CL:0000123,4.11e-15,10;CL:0000125,4.11e-15,10;CL:0000030,4.11e-15,10;CL:0000339,4.11e-15,10;CL:0002453,2.20e-11,8;CL:0000068,9.40e-10,3;CL:0002202,9.40e-10,3;CL:0000069,9.40e-10,3;CL:0002632,9.40e-10,3;CL:0002368,9.40e-10,3;CL:0000307,9.40e-10,3;CL:0000377,9.40e-10,3;CL:0002092,3.31e-09,3;CL:0002540,3.31e-09,3;CL:0000219,4.18e-09,54;CL:0000128,2.84e-07,6;CL:0000126,2.84e-07,6;CL:0000127,2.84e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!5.61e-10!193;UBERON:0004120!5.61e-10!193;UBERON:0006603!5.61e-10!193;UBERON:0009569!3.80e-09!66;UBERON:0002100!1.35e-08!98;UBERON:0005256!4.20e-08!47;UBERON:0005172!5.48e-08!49;UBERON:0005173!5.48e-08!49;UBERON:0002417!5.48e-08!49;UBERON:0000916!5.48e-08!49;UBERON:0003104!1.67e-07!131;UBERON:0009142!1.67e-07!131;UBERON:0005177!4.20e-07!85 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003126,9.40e-10,3;UBERON:0001005,9.40e-10,3;UBERON:0007196,9.40e-10,3;UBERON:0001558,9.40e-10,3 | |||
|phase1_expression=0,0,0,0,0,0,0,2.1950964985068,0.140788722151667,0,0.171217968225505,0,0,0.611942816932982,0,0,0,0,0,0,0,0.0992909512008853,0,0.159992422793407,0,0,0,0,0,0,0,0.635030673459631,0,0,0,0,0,0,0,0,0,0,0,0.629484089877886,0.811015449756117,3.48738829107195,5.47673941043627,0.436050312760893,2.85592037554813,1.55543919259427,1.25987779462826,0,0,0,0,0.257259436035947,1.14613375975503,2.06268836910977,0,0,0,0.677689064138264,0,2.2497492932035,10.8775299882367,4.2628806896766,1.79760066311043,1.92109152660777,0,0,0,0,0,0,0.0958454710182364,0,0,0,0,0,0.0914876436024097,0,0,0,0,0,0.142371680799103,0,1.06016670666458,1.058001841495,0.579728977403356,5.16254326188832,0.679971333707751,0.539703191637817,0.649776417447669,0,0.421333260395256,1.87473354835864,2.33807404142582,3.5333957451034,0,0,0,0,22.0820861831438,28.1229450677359,24.7706978057244,0.5709193985953,0,2.9688427812965,0.867426633830679,0.304465478312141,1.15307748628029,1.3565037649736,0.587943535678524,0.376999773989026,0.741584903203122,0.144599356919912,0,0.323533699894818,0.220841518460394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.916554274652847,0.248813941220186,0,0.210441855886474,0,0.229902104433473,0.180062129805349,0.150704817835715,0.204109497453984,0,0.0937017245597288,0,0,0,0,0,0,0.348252166522167,0.411564272815887,0.398068533636986,0,0,0,0.207125772535502,0.234526059981096,0,0.710234206755631,0,0,0.232533944750408,0,0.350296027101508,0.329119699826961,0.32833492815819,0.405344047729279,0,0.439100230582101,0,0.210289948564127,0,0,0,0,0,0.257734922644187,0,0,0,0.474529061544512,0.164698954724011,0.502670417600539,0.198956472041151,0.38992817423824,0,0.216138049874694,0.597423819763102,0.569003702859245,0.114248512609729,1.1270773567308,0.203651327845314,0.193952487167626,0.210407459670956,0.126473074248515,0.885660887877613,0.627994911365499,0.246794327843601,2.96452627087149,0,0.196558995113203,0,0,0,0,0.575392274901621,0.324270453550071,0.274561413188081,1.43768206527355,1.86070473834252,0,0.757736633841335,0.179397413521912,0.964887042726734,0,0.189491411770485,0.162964976442026,0,0,0,0.238043640886014,0,0.157635144106191,0.221464689648775,0,0.491589944147214,0.345369963731791,1.01254341007058,0,0.54390568381871,0,0,0.160550589987792,0,0.327869890753351,0,0,0,0,0,0,0,0,0,0,0,0.709700426041343,0.178065603667255,1.14020871547503,0.164970122972535,1.32745138339963,0,0,0,0,0.307435147943927,0.258428293168221,0,0,0.316036757935816,0,0,0,0,0.129358683782755,0,0,0,0.164549020602121,0.304464949114599,0.704015124191131,0.847328283455281,0.220528398054962,0,0.161464426695906,0.0603129249281559,0.358117032009409,0,0,0.18542530201051,0,0,0.185194527369712,0,0.136694227721025,0.457556346413045,0,0,0,0,0.316335993581135,0,0,0.418176592028937,0.87345025498471,0.404593039154462,0.247960367176008,0.26175594198403,0.129614973291793,0,0,0,0,0,0.129159823477731,0,0,0.13020438484395,0.314578033277133,0,0.288030006257865,0.316011120628178,0,0,0.129920822977795,0,0,0.120195449519969,0,0,0.0762068066549998,0.100826185136841,0,0,0,0.680191150845634,0,0,0.167884616364078,1.15913756419314,1.12609485270709,0.183151624267265,3.64426244434412,0,0,0,0,0.171853182343688,0,0,0,0,0,0,0,0,0.170733605754134,0,0,0,0,0,0,0,0,0,0,0.128050304809739,0.0574354689556133,0,0.231768651889711,0,0.412085900803307,0.147198920134397,0,0.177475806159338,0,0.145346416632329,0,0.0846146078916765,0,0,0.271608227691724,0,0,0,0,0,0,0,0,0.214871054048298,0.382576664137687,0.220591419119515,0 | |||
|short_description=p@chr3:95539830..95539861,+ | |||
}} |
Revision as of 03:06, 14 September 2013
Short description: | p@chr3:95539830..95539861, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:95539830..95539861, + |
Coexpression cluster: | MCL_coexpression_mm9:72 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
migratory neural crest cell | 4.11e-15 | 10 |
neuron associated cell | 4.11e-15 | 10 |
glial cell (sensu Vertebrata) | 4.11e-15 | 10 |
neuron associated cell (sensu Vertebrata) | 4.11e-15 | 10 |
glial cell | 4.11e-15 | 10 |
glioblast | 4.11e-15 | 10 |
glioblast (sensu Vertebrata) | 4.11e-15 | 10 |
oligodendrocyte precursor cell | 2.20e-11 | 8 |
duct epithelial cell | 9.40e-10 | 3 |
epithelial cell of tracheobronchial tree | 9.40e-10 | 3 |
branched duct epithelial cell | 9.40e-10 | 3 |
epithelial cell of lower respiratory tract | 9.40e-10 | 3 |
respiratory epithelial cell | 9.40e-10 | 3 |
tracheal epithelial cell | 9.40e-10 | 3 |
tracheoblast | 9.40e-10 | 3 |
bone marrow cell | 3.31e-09 | 3 |
mesenchymal stem cell of the bone marrow | 3.31e-09 | 3 |
motile cell | 4.18e-09 | 54 |
oligodendrocyte | 2.84e-07 | 6 |
macroglial cell | 2.84e-07 | 6 |
astrocyte | 2.84e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
trachea | 9.40e-10 | 3 |
respiratory airway | 9.40e-10 | 3 |
tracheobronchial tree | 9.40e-10 | 3 |
lower respiratory tract | 9.40e-10 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.