FFCP PHASE1:Mm9::chr6:149142423..149142427,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=169|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr6:149142423..149142427,+|id=chr6:149142423..149142427,+|ontology_enrichment_celltype=CL:0000063!4.48e-15!66;CL:0000066!1.74e-09!25;CL:0000223!9.47e-09!20;CL:0002320!1.53e-08!46;CL:0000134!1.53e-08!46;CL:0002563!6.73e-08!9;CL:0002251!6.73e-08!9;CL:0000144!1.11e-07!121;CL:0000012!1.11e-07!121;CL:0000838!3.91e-07!12;CL:0000219!5.65e-07!54|ontology_enrichment_celltype_v019_2=CL:0000066,3.38e-21,25;CL:0000223,2.63e-18,20;CL:0002563,3.77e-13,9;CL:0002251,3.77e-13,9;CL:0002076,4.43e-13,15;CL:0000239,7.51e-12,6;CL:0000677,7.51e-12,6;CL:0000584,7.51e-12,6;CL:0000075,4.89e-10,7;CL:0002320,4.12e-08,46;CL:0000134,4.12e-08,46;CL:0000988,3.18e-07,32;CL:0002032,3.18e-07,32;CL:0000037,3.18e-07,32;CL:0000837,3.18e-07,32;CL:0000682,5.15e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000490!1.05e-10!66;UBERON:0000344!5.53e-10!15;UBERON:0003929!3.59e-09!55;UBERON:0001242!1.51e-08!13;UBERON:0000060!1.51e-08!13;UBERON:0001262!1.51e-08!13;UBERON:0004786!1.51e-08!13;UBERON:0002384!1.53e-08!46;UBERON:0005911!3.69e-08!69;UBERON:0003350!6.73e-08!9;UBERON:0004808!6.73e-08!9;UBERON:0001277!6.73e-08!9;UBERON:0004923!9.47e-08!24|ontology_enrichment_uberon_v019_2=UBERON:0000344,2.20e-16,15;UBERON:0001242,2.82e-13,13;UBERON:0001262,2.82e-13,13;UBERON:0004786,2.82e-13,13;UBERON:0003350,3.77e-13,9;UBERON:0004808,3.77e-13,9;UBERON:0001277,3.77e-13,9;UBERON:0000485,1.77e-10,11;UBERON:0004923,3.42e-09,24;UBERON:0002384,4.12e-08,46|phase1_expression=0,11.1672130444596,15.4699741392442,2.41971369045464,2.00358291978539,7.21880869221126,4.90586545250604,0.774739940649458,2.81577444303333,3.97909694747389,1.02730780935303,0.319088635981346,0.513602189793617,0.174840804837995,0,0,0,0,0.137114433605739,0,0.17008658030214,0.794327609607082,1.04479915655574,2.07990149631429,6.42345986988076,10.3361753540704,10.3382879078178,4.74036711908956,1.52018735565099,0.756090389279792,3.10422714917427,0,0,0,3.46621943701529,0.664938581433969,2.6542016314108,0.837063261473815,3.1253413780952,0,68.8230840996287,5.46436387966757,2.91306211818692,0.629484089877886,1.92616169317078,3.48738829107195,0.782391344348039,0,0,0,0,0,1.17447824240415,2.17608642603403,0.336093799142464,0.257259436035947,0,0.515672092277442,0,0,0,0.338844532069132,0.889294796111139,0,0,0,0,0.384218305321555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227178579999552,0,26.3776684718527,0.860423876981386,2.03991400112325,0,3.24888208723835,6.2723764193627,0.421333260395256,0.340860645156116,0.519572009205738,0.70667914902068,0,0,0,0,1.29894624606728,1.01343946190039,1.01104889002957,1.25602267690966,2.07150306917737,0.148442139064825,0,0,0,0.150722640552623,0.23517741427141,0,0,3.90418263683761,0,0.161766849947409,0,0,0,0,0,0.766371165625774,9.58520996047362,18.5969846607956,9.02198612218759,0,0,0,0,0,0,0,0,0.248813941220186,0,0,0.130120442962704,0,0,0,0.0680364991513279,0,0,0,0.215567992932842,0,0,0,0,0,0,0,10.5331978096985,10.5512641917033,1.98914449576915,0.207125772535502,0,0,0,0,0,0,0,0,0,0,0,0,0.219550115291051,0.134206418760372,0,0,0,0.264450566663544,0,0,0,0,0,0,0,0.164698954724011,0,0,0,0,0.216138049874694,0,0.189667900953082,0,0,0,0,0.210407459670956,0,0,0,0.123397163921801,0.592905254174298,0,0.393117990226406,0.224862112384854,0,0.482354319504834,0.50925170356284,0,0,0.274561413188081,0,0,0,0,0,0,0.554259570499814,0.189491411770485,0,0,0,0,0,0,0.315270288212382,0,0,0.491589944147214,0.345369963731791,0.433947175744535,0,1.08781136763742,0.491764273019036,0.275936746304732,0,0,0.327869890753351,0,0,0,0,0,0,0,0.404810701674894,0,0,0,0.425820255624806,0,0,0.494910368917606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214337035031592,0.177340233642274,0,0,0,0.704015124191131,0.21183207086382,0,0.32977250588296,0.161464426695906,0,0,0,0,0,0.170870880797853,0,0,0,0.136694227721025,0.228778173206523,29.5762468189308,25.8910186798767,16.307596908922,0,0,0,0,0,0,0,0,0,0.259229946583586,0,0,0,0,0,0,0,0,0,0,0,0,0,0.810900861160657,0.410843828659309,0.129920822977795,0.358053391334963,0.39736270956253,0.240390899039938,0,0.100966449948148,0.457240839929999,0.201652370273681,0.38983152295901,0.673482891482306,0.701261413089414,0,0,0.0897138566094757,0,0.19318959403219,0.563047426353546,0.183151624267265,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0,0,0,0.206035057238894,0,0,0,0,0,0.0640251524048693,0.0574354689556133,0,0,0.38581844092741,0,0,1.02860775715625,0,0,0,0.0941093804153306,0.0846146078916765,0,0,0.135804113845862,0,0,0,0.409231043169689,0,0,0,0,0,0,0,0|short_description=p@chr6:149142423..149142427,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=169 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr6:149142423..149142427,+ | |||
|id=chr6:149142423..149142427,+ | |||
|ontology_enrichment_celltype=CL:0000063!4.48e-15!66;CL:0000066!1.74e-09!25;CL:0000223!9.47e-09!20;CL:0002320!1.53e-08!46;CL:0000134!1.53e-08!46;CL:0002563!6.73e-08!9;CL:0002251!6.73e-08!9;CL:0000144!1.11e-07!121;CL:0000012!1.11e-07!121;CL:0000838!3.91e-07!12;CL:0000219!5.65e-07!54 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.38e-21,25;CL:0000223,2.63e-18,20;CL:0002563,3.77e-13,9;CL:0002251,3.77e-13,9;CL:0002076,4.43e-13,15;CL:0000239,7.51e-12,6;CL:0000677,7.51e-12,6;CL:0000584,7.51e-12,6;CL:0000075,4.89e-10,7;CL:0002320,4.12e-08,46;CL:0000134,4.12e-08,46;CL:0000988,3.18e-07,32;CL:0002032,3.18e-07,32;CL:0000037,3.18e-07,32;CL:0000837,3.18e-07,32;CL:0000682,5.15e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000490!1.05e-10!66;UBERON:0000344!5.53e-10!15;UBERON:0003929!3.59e-09!55;UBERON:0001242!1.51e-08!13;UBERON:0000060!1.51e-08!13;UBERON:0001262!1.51e-08!13;UBERON:0004786!1.51e-08!13;UBERON:0002384!1.53e-08!46;UBERON:0005911!3.69e-08!69;UBERON:0003350!6.73e-08!9;UBERON:0004808!6.73e-08!9;UBERON:0001277!6.73e-08!9;UBERON:0004923!9.47e-08!24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,2.20e-16,15;UBERON:0001242,2.82e-13,13;UBERON:0001262,2.82e-13,13;UBERON:0004786,2.82e-13,13;UBERON:0003350,3.77e-13,9;UBERON:0004808,3.77e-13,9;UBERON:0001277,3.77e-13,9;UBERON:0000485,1.77e-10,11;UBERON:0004923,3.42e-09,24;UBERON:0002384,4.12e-08,46 | |||
|phase1_expression=0,11.1672130444596,15.4699741392442,2.41971369045464,2.00358291978539,7.21880869221126,4.90586545250604,0.774739940649458,2.81577444303333,3.97909694747389,1.02730780935303,0.319088635981346,0.513602189793617,0.174840804837995,0,0,0,0,0.137114433605739,0,0.17008658030214,0.794327609607082,1.04479915655574,2.07990149631429,6.42345986988076,10.3361753540704,10.3382879078178,4.74036711908956,1.52018735565099,0.756090389279792,3.10422714917427,0,0,0,3.46621943701529,0.664938581433969,2.6542016314108,0.837063261473815,3.1253413780952,0,68.8230840996287,5.46436387966757,2.91306211818692,0.629484089877886,1.92616169317078,3.48738829107195,0.782391344348039,0,0,0,0,0,1.17447824240415,2.17608642603403,0.336093799142464,0.257259436035947,0,0.515672092277442,0,0,0,0.338844532069132,0.889294796111139,0,0,0,0,0.384218305321555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227178579999552,0,26.3776684718527,0.860423876981386,2.03991400112325,0,3.24888208723835,6.2723764193627,0.421333260395256,0.340860645156116,0.519572009205738,0.70667914902068,0,0,0,0,1.29894624606728,1.01343946190039,1.01104889002957,1.25602267690966,2.07150306917737,0.148442139064825,0,0,0,0.150722640552623,0.23517741427141,0,0,3.90418263683761,0,0.161766849947409,0,0,0,0,0,0.766371165625774,9.58520996047362,18.5969846607956,9.02198612218759,0,0,0,0,0,0,0,0,0.248813941220186,0,0,0.130120442962704,0,0,0,0.0680364991513279,0,0,0,0.215567992932842,0,0,0,0,0,0,0,10.5331978096985,10.5512641917033,1.98914449576915,0.207125772535502,0,0,0,0,0,0,0,0,0,0,0,0,0.219550115291051,0.134206418760372,0,0,0,0.264450566663544,0,0,0,0,0,0,0,0.164698954724011,0,0,0,0,0.216138049874694,0,0.189667900953082,0,0,0,0,0.210407459670956,0,0,0,0.123397163921801,0.592905254174298,0,0.393117990226406,0.224862112384854,0,0.482354319504834,0.50925170356284,0,0,0.274561413188081,0,0,0,0,0,0,0.554259570499814,0.189491411770485,0,0,0,0,0,0,0.315270288212382,0,0,0.491589944147214,0.345369963731791,0.433947175744535,0,1.08781136763742,0.491764273019036,0.275936746304732,0,0,0.327869890753351,0,0,0,0,0,0,0,0.404810701674894,0,0,0,0.425820255624806,0,0,0.494910368917606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214337035031592,0.177340233642274,0,0,0,0.704015124191131,0.21183207086382,0,0.32977250588296,0.161464426695906,0,0,0,0,0,0.170870880797853,0,0,0,0.136694227721025,0.228778173206523,29.5762468189308,25.8910186798767,16.307596908922,0,0,0,0,0,0,0,0,0,0.259229946583586,0,0,0,0,0,0,0,0,0,0,0,0,0,0.810900861160657,0.410843828659309,0.129920822977795,0.358053391334963,0.39736270956253,0.240390899039938,0,0.100966449948148,0.457240839929999,0.201652370273681,0.38983152295901,0.673482891482306,0.701261413089414,0,0,0.0897138566094757,0,0.19318959403219,0.563047426353546,0.183151624267265,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0,0,0,0.206035057238894,0,0,0,0,0,0.0640251524048693,0.0574354689556133,0,0,0.38581844092741,0,0,1.02860775715625,0,0,0,0.0941093804153306,0.0846146078916765,0,0,0.135804113845862,0,0,0,0.409231043169689,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr6:149142423..149142427,+ | |||
}} |
Revision as of 09:25, 14 September 2013
Short description: | p@chr6:149142423..149142427, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr6:149142423..149142427, + |
Coexpression cluster: | MCL_coexpression_mm9:169 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.38e-21 | 25 |
endodermal cell | 2.63e-18 | 20 |
intestinal epithelial cell | 3.77e-13 | 9 |
epithelial cell of alimentary canal | 3.77e-13 | 9 |
endo-epithelial cell | 4.43e-13 | 15 |
brush border epithelial cell | 7.51e-12 | 6 |
gut absorptive cell | 7.51e-12 | 6 |
enterocyte | 7.51e-12 | 6 |
columnar/cuboidal epithelial cell | 4.89e-10 | 7 |
connective tissue cell | 4.12e-08 | 46 |
mesenchymal cell | 4.12e-08 | 46 |
hematopoietic cell | 3.18e-07 | 32 |
hematopoietic oligopotent progenitor cell | 3.18e-07 | 32 |
hematopoietic stem cell | 3.18e-07 | 32 |
hematopoietic multipotent progenitor cell | 3.18e-07 | 32 |
M cell of gut | 5.15e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
mucosa | 2.20e-16 | 15 |
intestinal mucosa | 2.82e-13 | 13 |
wall of intestine | 2.82e-13 | 13 |
gastrointestinal system mucosa | 2.82e-13 | 13 |
epithelium of mucosa | 3.77e-13 | 9 |
gastrointestinal system epithelium | 3.77e-13 | 9 |
intestinal epithelium | 3.77e-13 | 9 |
simple columnar epithelium | 1.77e-10 | 11 |
organ component layer | 3.42e-09 | 24 |
connective tissue | 4.12e-08 | 46 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.