FFCP PHASE1:Mm9::chr4:48598120..48598140,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=230157|HGNC=|MCL_coexpression_id=2275|UniProt=Q6PFE7|association_with_transcript=55bp_to_ENSMUST00000107703,NM_021436,uc008svk.1,uc008svl.1_5end|description=CAGE_peak_5_at_Tmeff1_5end|id=chr4:48598120..48598140,+|ontology_enrichment_celltype=CL:0000540!7.59e-18!33;CL:0000047!7.59e-18!33;CL:0000031!7.59e-18!33;CL:0000404!7.59e-18!33;CL:0000117!6.50e-16!23;CL:0000337!6.50e-16!23;CL:0000393!1.58e-13!39;CL:0000211!1.58e-13!39;CL:0002319!4.33e-12!43;CL:0000221!5.61e-12!44;CL:0000133!5.61e-12!44;CL:0000055!6.61e-09!50|ontology_enrichment_celltype_v019_2=CL:0000117,1.90e-28,23;CL:0000337,1.90e-28,23;CL:0000540,6.35e-23,33;CL:0000047,6.35e-23,33;CL:0000031,6.35e-23,33;CL:0000404,6.35e-23,33;CL:0000393,3.67e-18,39;CL:0000211,3.67e-18,39;CL:0002319,9.63e-16,43;CL:0000221,3.29e-15,44;CL:0000133,3.29e-15,44;CL:0002609,4.59e-09,6;CL:0002321,6.84e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.23e-20!73;UBERON:0005743!2.23e-20!73;UBERON:0000073!3.93e-20!75;UBERON:0001016!3.93e-20!75;UBERON:0002346!9.57e-19!71;UBERON:0003075!9.57e-19!71;UBERON:0007284!9.57e-19!71;UBERON:0004121!7.20e-18!102;UBERON:0000924!7.20e-18!102;UBERON:0006601!7.20e-18!102;UBERON:0001049!2.67e-16!52;UBERON:0005068!2.67e-16!52;UBERON:0006241!2.67e-16!52;UBERON:0007135!2.67e-16!52;UBERON:0003056!5.09e-16!49;UBERON:0000033!1.15e-15!63;UBERON:0002020!6.65e-15!34;UBERON:0002616!3.41e-14!49;UBERON:0000955!1.77e-13!50;UBERON:0006238!1.77e-13!50;UBERON:0003080!3.08e-13!40;UBERON:0002780!8.13e-13!39;UBERON:0001890!8.13e-13!39;UBERON:0006240!8.13e-13!39;UBERON:0002791!1.31e-11!29;UBERON:0003528!1.31e-11!29;UBERON:0001893!1.31e-11!29;UBERON:0000956!1.58e-07!21;UBERON:0001869!1.58e-07!21;UBERON:0000203!1.58e-07!21;UBERON:0000153!5.71e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.31e-26,64;UBERON:0003075,1.31e-26,64;UBERON:0007284,1.31e-26,64;UBERON:0002020,9.38e-26,34;UBERON:0003056,1.66e-22,49;UBERON:0010371,7.58e-22,73;UBERON:0001017,1.17e-21,73;UBERON:0004121,1.56e-21,95;UBERON:0000924,1.56e-21,95;UBERON:0006601,1.56e-21,95;UBERON:0000073,6.32e-21,54;UBERON:0001016,9.15e-21,75;UBERON:0001049,3.68e-20,52;UBERON:0005068,3.68e-20,52;UBERON:0006241,3.68e-20,52;UBERON:0007135,3.68e-20,52;UBERON:0003528,2.82e-19,29;UBERON:0002791,2.82e-19,29;UBERON:0001893,2.82e-19,29;UBERON:0003080,2.31e-17,40;UBERON:0002780,1.38e-16,39;UBERON:0001890,1.38e-16,39;UBERON:0006240,1.38e-16,39;UBERON:0010314,6.48e-15,92;UBERON:0002616,4.34e-14,46;UBERON:0000955,1.26e-13,47;UBERON:0006238,1.26e-13,47;UBERON:0000956,4.07e-12,21;UBERON:0001869,4.07e-12,21;UBERON:0000203,4.07e-12,21;UBERON:0002240,8.44e-09,6;UBERON:0005174,8.44e-09,6;UBERON:0001137,8.44e-09,6;UBERON:0002420,1.19e-08,8;UBERON:0007245,1.19e-08,8;UBERON:0010009,1.19e-08,8;UBERON:0010011,1.19e-08,8;UBERON:0000454,1.19e-08,8;UBERON:0001948,3.55e-08,5;UBERON:0002315,3.55e-08,5;UBERON:0002619,4.63e-08,17|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.29616883407888,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,0,0.218025156380447,0,0,0.139986421625363,0,0,0,0,0,0,0.515672092277442,6.47412674750713,7.93486468908049,6.97214543856797,0,0,0,0,0,0,0.384218305321555,3.11068836925433,3.10513658162888,2.3135745748652,3.14216082844184,2.42955395046775,3.79721477566358,2.77951865952885,3.67687514644008,3.30347642998166,1.91531007127782,0.921639199537461,7.91317726381163,9.42322729104819,9.89735404057844,1.95428099300967,2.25105044012672,1.06958773443767,5.00868595305235,4.55589378557129,6.89677949553612,0.075726193333184,0.453429360640713,0,0,0,0,0,0,0.140444420131752,0,0.259786004602869,0.35333957451034,0.281686839553361,0,0,0,0.649473123033642,0.760079596425296,0,0.11418387971906,0,0,0.520455980298408,0.304465478312141,0.461230994512117,0.301445281105245,0.23517741427141,0,0,0,0,0,0.220841518460394,0,0,0.292780797011547,0.41889341362691,0,0,0,0.127070227073065,1.19832511523858,0.457500602818626,4.14659361972453,1.56441888173049,0.511430914660661,0.62336413367868,1.46017136760982,0.407357455401265,0,0,0,1.17108398666433,1.60931473103431,2.88099407688559,2.26057226753573,2.04109497453984,1.15302348256365,1.12442069471675,0.517406741478031,1.5089759505299,0.945530400839096,1.05570674498369,0.657587197282725,0.278047249225598,0,0.205782136407943,0.199034266818493,0,0,0,0,0.703578179943289,0.900310307305074,0.710234206755631,0.393528463494808,0.154267112887378,0,0,0.233530684734339,0.16455984991348,0.164167464079095,0.162137619091711,0,0,0,0.841159794256509,6.07137213037778,0,0,1.70630600428187,0.464473343720877,0.77320476793256,0.605050573870028,0.22237804384487,0,0,0.164698954724011,0,0.397912944082302,0.19496408711912,0,0,0.199141273254367,0.189667900953082,0.342745537829186,0,0,0,0.420814919341911,0.0632365371242573,0,0,0,0,0,0.393117990226406,0,0,0,0,0,0,0,0,0.372140947668503,0,0.505157755894224,0,0,0,0.568474235311454,0.977789858652155,0.169745085775188,0,0.335012514883631,0.238043640886014,0.195133647857799,0.788175720530955,0.44292937929755,0.478364305972461,0.163863314715738,0.345369963731791,0.144649058581512,0,0,0,0,0.80275294993896,0.937693492737625,0.819674726883377,0,0.631016438832513,1.56175497718655,1.07711698866399,0.477937595905104,0.891194696329576,0.849229592366497,0.404810701674894,2.04579100537918,0.790575555893047,0,0,0.712262414669021,0.162886959353576,0,0,0.971122544619926,0,0.565815239267694,0.295301892880773,0,0.258428293168221,0.363533729477506,0.712994756769443,0,0,0,0,1.08036656418786,1.4229455216103,0.857348140126369,0.886701168211368,0.535106452806212,0.658196082408484,0.304464949114599,0.23467170806371,0.63549621259146,0.220528398054962,0,0.161464426695906,0.241251699712623,0,0.164140899745061,0,1.11255181206306,0,0.206386867963223,0,0,0,0,0,0,0,0,2.05618395827738,0.406638934253697,0.324016022465404,0.209088296014469,0,0.539457385539283,0.330613822901344,0,0,0,5.07323644815771,0.897099276263873,0.496375471371293,0.777804753376191,1.16243841129958,0.844780627453891,0.352071715937262,0.39061315453185,0.943734099831398,0.966336483304024,7.20075015644664,0,0.202725215290164,0.513554785824136,0,0.179026695667481,0,0,0,0,0,0,0,0.0962118416403295,0,0.226730383615211,0.887943813496259,0.269141569828427,0.839423081820392,0,0,0,0,0,2.25900737046827,1.84130094602871,2.86447756719698,3.43706364687375,1.37016503954128,0.755393897389701,0.675022500231806,1.35096360967266,0,1.55328093525546,1.3492355185943,2.79317411380722,1.87806966329548,1.21553358534147,0.838452650511929,0.367687016900028,1.11123363900808,0.618105171716683,0.64183841918363,0.252697211763798,1.2673964994512,0.565879024158229,0.749132059759059,1.15245274328765,0.804096565378586,0.476293691283074,0.695305955669133,0.77163688185482,0.412085900803307,0.883193520806384,1.02860775715625,1.4198064492747,0.238436189947321,0.872078499793971,0.752875043322645,1.26921911837515,1.46342378298218,0.789209134313529,1.35804113845862,2.24456908663095,0.830445126869219,1.28055827088233,0.818462086339379,0.619747364743864,0.578719832943424,1.74867404556562,0.467863216890817,0.429742108096597,0.382576664137687,0.441182838239031,0.231867835620421|short_description=p5@Tmeff1}} | ||
|EntrezGene=230157 | |||
|HGNC= | |||
|MCL_coexpression_id=2275 | |||
|UniProt=Q6PFE7 | |||
|association_with_transcript=55bp_to_ENSMUST00000107703,NM_021436,uc008svk.1,uc008svl.1_5end | |||
|description=CAGE_peak_5_at_Tmeff1_5end | |||
|id=chr4:48598120..48598140,+ | |||
|ontology_enrichment_celltype=CL:0000540!7.59e-18!33;CL:0000047!7.59e-18!33;CL:0000031!7.59e-18!33;CL:0000404!7.59e-18!33;CL:0000117!6.50e-16!23;CL:0000337!6.50e-16!23;CL:0000393!1.58e-13!39;CL:0000211!1.58e-13!39;CL:0002319!4.33e-12!43;CL:0000221!5.61e-12!44;CL:0000133!5.61e-12!44;CL:0000055!6.61e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.90e-28,23;CL:0000337,1.90e-28,23;CL:0000540,6.35e-23,33;CL:0000047,6.35e-23,33;CL:0000031,6.35e-23,33;CL:0000404,6.35e-23,33;CL:0000393,3.67e-18,39;CL:0000211,3.67e-18,39;CL:0002319,9.63e-16,43;CL:0000221,3.29e-15,44;CL:0000133,3.29e-15,44;CL:0002609,4.59e-09,6;CL:0002321,6.84e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.23e-20!73;UBERON:0005743!2.23e-20!73;UBERON:0000073!3.93e-20!75;UBERON:0001016!3.93e-20!75;UBERON:0002346!9.57e-19!71;UBERON:0003075!9.57e-19!71;UBERON:0007284!9.57e-19!71;UBERON:0004121!7.20e-18!102;UBERON:0000924!7.20e-18!102;UBERON:0006601!7.20e-18!102;UBERON:0001049!2.67e-16!52;UBERON:0005068!2.67e-16!52;UBERON:0006241!2.67e-16!52;UBERON:0007135!2.67e-16!52;UBERON:0003056!5.09e-16!49;UBERON:0000033!1.15e-15!63;UBERON:0002020!6.65e-15!34;UBERON:0002616!3.41e-14!49;UBERON:0000955!1.77e-13!50;UBERON:0006238!1.77e-13!50;UBERON:0003080!3.08e-13!40;UBERON:0002780!8.13e-13!39;UBERON:0001890!8.13e-13!39;UBERON:0006240!8.13e-13!39;UBERON:0002791!1.31e-11!29;UBERON:0003528!1.31e-11!29;UBERON:0001893!1.31e-11!29;UBERON:0000956!1.58e-07!21;UBERON:0001869!1.58e-07!21;UBERON:0000203!1.58e-07!21;UBERON:0000153!5.71e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.31e-26,64;UBERON:0003075,1.31e-26,64;UBERON:0007284,1.31e-26,64;UBERON:0002020,9.38e-26,34;UBERON:0003056,1.66e-22,49;UBERON:0010371,7.58e-22,73;UBERON:0001017,1.17e-21,73;UBERON:0004121,1.56e-21,95;UBERON:0000924,1.56e-21,95;UBERON:0006601,1.56e-21,95;UBERON:0000073,6.32e-21,54;UBERON:0001016,9.15e-21,75;UBERON:0001049,3.68e-20,52;UBERON:0005068,3.68e-20,52;UBERON:0006241,3.68e-20,52;UBERON:0007135,3.68e-20,52;UBERON:0003528,2.82e-19,29;UBERON:0002791,2.82e-19,29;UBERON:0001893,2.82e-19,29;UBERON:0003080,2.31e-17,40;UBERON:0002780,1.38e-16,39;UBERON:0001890,1.38e-16,39;UBERON:0006240,1.38e-16,39;UBERON:0010314,6.48e-15,92;UBERON:0002616,4.34e-14,46;UBERON:0000955,1.26e-13,47;UBERON:0006238,1.26e-13,47;UBERON:0000956,4.07e-12,21;UBERON:0001869,4.07e-12,21;UBERON:0000203,4.07e-12,21;UBERON:0002240,8.44e-09,6;UBERON:0005174,8.44e-09,6;UBERON:0001137,8.44e-09,6;UBERON:0002420,1.19e-08,8;UBERON:0007245,1.19e-08,8;UBERON:0010009,1.19e-08,8;UBERON:0010011,1.19e-08,8;UBERON:0000454,1.19e-08,8;UBERON:0001948,3.55e-08,5;UBERON:0002315,3.55e-08,5;UBERON:0002619,4.63e-08,17 | |||
|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.29616883407888,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0,0,0,0.218025156380447,0,0,0.139986421625363,0,0,0,0,0,0,0.515672092277442,6.47412674750713,7.93486468908049,6.97214543856797,0,0,0,0,0,0,0.384218305321555,3.11068836925433,3.10513658162888,2.3135745748652,3.14216082844184,2.42955395046775,3.79721477566358,2.77951865952885,3.67687514644008,3.30347642998166,1.91531007127782,0.921639199537461,7.91317726381163,9.42322729104819,9.89735404057844,1.95428099300967,2.25105044012672,1.06958773443767,5.00868595305235,4.55589378557129,6.89677949553612,0.075726193333184,0.453429360640713,0,0,0,0,0,0,0.140444420131752,0,0.259786004602869,0.35333957451034,0.281686839553361,0,0,0,0.649473123033642,0.760079596425296,0,0.11418387971906,0,0,0.520455980298408,0.304465478312141,0.461230994512117,0.301445281105245,0.23517741427141,0,0,0,0,0,0.220841518460394,0,0,0.292780797011547,0.41889341362691,0,0,0,0.127070227073065,1.19832511523858,0.457500602818626,4.14659361972453,1.56441888173049,0.511430914660661,0.62336413367868,1.46017136760982,0.407357455401265,0,0,0,1.17108398666433,1.60931473103431,2.88099407688559,2.26057226753573,2.04109497453984,1.15302348256365,1.12442069471675,0.517406741478031,1.5089759505299,0.945530400839096,1.05570674498369,0.657587197282725,0.278047249225598,0,0.205782136407943,0.199034266818493,0,0,0,0,0.703578179943289,0.900310307305074,0.710234206755631,0.393528463494808,0.154267112887378,0,0,0.233530684734339,0.16455984991348,0.164167464079095,0.162137619091711,0,0,0,0.841159794256509,6.07137213037778,0,0,1.70630600428187,0.464473343720877,0.77320476793256,0.605050573870028,0.22237804384487,0,0,0.164698954724011,0,0.397912944082302,0.19496408711912,0,0,0.199141273254367,0.189667900953082,0.342745537829186,0,0,0,0.420814919341911,0.0632365371242573,0,0,0,0,0,0.393117990226406,0,0,0,0,0,0,0,0,0.372140947668503,0,0.505157755894224,0,0,0,0.568474235311454,0.977789858652155,0.169745085775188,0,0.335012514883631,0.238043640886014,0.195133647857799,0.788175720530955,0.44292937929755,0.478364305972461,0.163863314715738,0.345369963731791,0.144649058581512,0,0,0,0,0.80275294993896,0.937693492737625,0.819674726883377,0,0.631016438832513,1.56175497718655,1.07711698866399,0.477937595905104,0.891194696329576,0.849229592366497,0.404810701674894,2.04579100537918,0.790575555893047,0,0,0.712262414669021,0.162886959353576,0,0,0.971122544619926,0,0.565815239267694,0.295301892880773,0,0.258428293168221,0.363533729477506,0.712994756769443,0,0,0,0,1.08036656418786,1.4229455216103,0.857348140126369,0.886701168211368,0.535106452806212,0.658196082408484,0.304464949114599,0.23467170806371,0.63549621259146,0.220528398054962,0,0.161464426695906,0.241251699712623,0,0.164140899745061,0,1.11255181206306,0,0.206386867963223,0,0,0,0,0,0,0,0,2.05618395827738,0.406638934253697,0.324016022465404,0.209088296014469,0,0.539457385539283,0.330613822901344,0,0,0,5.07323644815771,0.897099276263873,0.496375471371293,0.777804753376191,1.16243841129958,0.844780627453891,0.352071715937262,0.39061315453185,0.943734099831398,0.966336483304024,7.20075015644664,0,0.202725215290164,0.513554785824136,0,0.179026695667481,0,0,0,0,0,0,0,0.0962118416403295,0,0.226730383615211,0.887943813496259,0.269141569828427,0.839423081820392,0,0,0,0,0,2.25900737046827,1.84130094602871,2.86447756719698,3.43706364687375,1.37016503954128,0.755393897389701,0.675022500231806,1.35096360967266,0,1.55328093525546,1.3492355185943,2.79317411380722,1.87806966329548,1.21553358534147,0.838452650511929,0.367687016900028,1.11123363900808,0.618105171716683,0.64183841918363,0.252697211763798,1.2673964994512,0.565879024158229,0.749132059759059,1.15245274328765,0.804096565378586,0.476293691283074,0.695305955669133,0.77163688185482,0.412085900803307,0.883193520806384,1.02860775715625,1.4198064492747,0.238436189947321,0.872078499793971,0.752875043322645,1.26921911837515,1.46342378298218,0.789209134313529,1.35804113845862,2.24456908663095,0.830445126869219,1.28055827088233,0.818462086339379,0.619747364743864,0.578719832943424,1.74867404556562,0.467863216890817,0.429742108096597,0.382576664137687,0.441182838239031,0.231867835620421 | |||
|short_description=p5@Tmeff1 | |||
}} |
Revision as of 05:10, 14 September 2013
Short description: | p5@Tmeff1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Tmeff1_5end |
Coexpression cluster: | MCL_coexpression_mm9:2275 |
Association with transcript: | 55bp_to_ENSMUST00000107703, NM_021436, uc008svk.1, uc008svl.1_5end |
EntrezGene: | Tmeff1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.90e-28 | 23 |
neuroblast (sensu Vertebrata) | 1.90e-28 | 23 |
neuron | 6.35e-23 | 33 |
neuronal stem cell | 6.35e-23 | 33 |
neuroblast | 6.35e-23 | 33 |
electrically signaling cell | 6.35e-23 | 33 |
electrically responsive cell | 3.67e-18 | 39 |
electrically active cell | 3.67e-18 | 39 |
neural cell | 9.63e-16 | 43 |
ectodermal cell | 3.29e-15 | 44 |
neurectodermal cell | 3.29e-15 | 44 |
neuron of cerebral cortex | 4.59e-09 | 6 |
embryonic cell | 6.84e-07 | 70 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.