FFCP PHASE1:Mm9::chr10:80813134..80813211,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=15353|HGNC=|UniProt=Q9Z104,E9Q2W1,Q3U1L0,Q3U1Z7,Q05DT2|association_with_transcript=0bp_to_ENSMUST00000020454,ENSMUST00000105324,ENSMUST00000140160,ENSMUST00000154609,NM_001163165,NM_001163166,NM_010440,uc007ghk.2,uc007ghl.2,uc007ghm.2,uc007ghn.2_5end|description=CAGE_peak_1_at_Hmg20b_5end|id=chr10:80813134..80813211,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003081!1.87e-11!88;UBERON:0000926!4.03e-09!193;UBERON:0004120!4.03e-09!193;UBERON:0006603!4.03e-09!193;UBERON:0001048!6.86e-07!147|ontology_enrichment_uberon_v019_2=UBERON:0003081,6.30e-11,87;UBERON:0000926,4.68e-10,120;UBERON:0004120,4.68e-10,120;UBERON:0006603,4.68e-10,120;UBERON:0001048,3.36e-07,134;UBERON:0000153,5.83e-07,43|phase1_expression=22.7411362888807,30.0118850569851,27.2999543633722,29.0365642854557,37.0662840160297,16.6200479192771,11.6806320297763,20.1432384568859,3.09735188733667,4.44722600011788,12.6701296486874,12.4444568032725,19.5168832121575,21.5054189950734,11.9919514253639,15.9955461237963,15.3903613188192,27.1297462208084,21.8011949433125,28.434106670468,17.6039610612714,12.2127869977089,11.2315909329742,12.6394014006791,11.9292826154928,21.8208146363708,18.9535278309993,17.8841123129288,17.6721780094428,11.5933859689568,10.4213340007993,7.62036808151557,7.38077745101484,0,10.3986583110459,9.14290549471708,10.6168065256432,17.5783284909501,18.7520482685712,10.9939986234498,15.2940186888064,19.8083190637949,19.9059244742773,15.7371022469472,13.787262645854,18.1711284640065,32.8604364626176,25.2909181401318,23.726107735323,16.7209713203884,17.9182619680464,25.8754615856949,22.8184344238521,12.3311564141929,20.1656279485478,10.8048963135098,14.3266719969378,16.5015069528782,12.9482534950143,10.5798195854407,12.0427966666174,18.9752937958714,12.450127145556,25.6471419425199,23.7327927016074,29.1296847127901,29.9600110518405,37.6533939215123,16.9014068062819,17.5507719831198,17.0363218694619,14.568200204594,14.5773237028065,13.229006315215,15.5269663049543,10.1114066527102,12.1127469099328,11.1087984134113,11.0596703944495,10.1552441552249,11.5274430939036,12.5019208933622,10.3297709630511,7.31591393041184,11.9182633265912,10.0173719061047,9.96601765593721,11.183966749518,13.5549886066399,14.6608826607164,19.7107852317141,10.3250865237766,12.2394840067395,14.0322829825832,12.3457519315057,13.4408066129201,15.1679973742292,16.7021716126497,15.846946280775,14.1335829804136,25.3518155598025,17.9657068380045,40.7688383530633,63.9960032837998,9.52560580449342,10.8944742154292,12.1325866803548,13.8162494460063,47.3856327074324,13.5082346548991,13.1848848342263,13.3964810457342,14.2981608298756,13.2635923686308,15.4041206347773,23.8766523526383,19.0340125155468,13.5923395504717,7.96149496754887,16.5002186946357,17.8881629952919,18.9101348722737,9.31958806090611,14.0534782565543,17.1746299587033,18.6483650302272,9.34557971146178,9.59844369589452,8.38663498682227,11.5338792341713,15.0975198930147,5.15182843662744,12.5153510538439,9.2057564638919,12.6750707181332,13.7905073607594,18.7384429484582,18.5366386209039,28.0522261861379,16.6249066150314,20.8192708740326,19.0818746679783,19.4467100189777,18.536692593793,18.4378912700098,18.8327168818729,19.3025552593041,21.4723797713383,21.1256633074185,20.2343505779567,20.586281527182,20.3852031157645,17.7950239504383,17.4126083261083,23.8707278233214,21.6947350832158,7.02213187313235,10.808612098818,14.2081749697796,18.4341937556597,20.8728193383176,21.6074473753218,24.6214525008619,22.8246508826988,28.0766145455028,29.5318109833018,28.16870714696,23.8201298429026,30.4435722339939,29.221808606079,24.3206428637567,24.1229979251798,21.9550115291051,17.312628020088,13.6688466566683,12.2456488731348,29.407271685558,14.5447811664949,18.9826542976358,15.5598570146494,17.1393723558384,12.1010114774006,12.2307924114679,13.1255682017666,14.7104009078799,10.3760341476127,12.8180956488137,16.1154742353332,14.4273424468149,15.2799299471218,18.371734239349,17.5244320463843,20.4841333029328,18.1655135049469,25.9227792048085,16.4957575554705,16.6799138964158,17.8846340720312,21.5004226222475,18.1560482014911,18.0548537017581,18.0159859325829,13.6368208460088,12.8470731401392,12.9728936774714,11.4679677316275,13.1859078902527,12.0588579876208,12.4766667372896,13.5217184601881,10.7009249671523,12.6298250066517,7.18841032636773,13.7692150637346,16.2259590019572,16.4176270665623,18.6573310062789,15.9206362049911,17.3667998756608,17.0542270593436,14.8298128562244,14.9375675482166,19.4792906079457,22.9483572695288,16.1869675802489,28.4895125872386,20.0196633014863,25.4684393096091,29.6585869702926,23.9240439484977,24.5212674249572,21.9866569043898,22.6186925908908,5.4390568381871,14.7529281905711,14.6246475541508,13.9679013289379,13.0104972117346,10.8197063948606,12.3710754330143,14.8288863125641,13.2749173060857,14.6487910458303,15.5329718669159,16.7099005561796,18.9661275628518,10.1202675418724,12.8592577480977,16.2067988958075,14.4594592389813,19.5877317587411,23.1485284767432,14.8227133011754,22.2709666012923,19.9117707509944,14.3240575331439,14.511530734308,14.7111962209601,17.7181135728464,15.6791925451403,16.0225541764297,18.1766864738753,16.7553767840819,14.8537276229834,10.5418608574999,13.4076206222643,27.9160476718106,20.7070258136007,25.0955846538544,19.2903331528433,16.3153014950892,17.1234064897988,13.4930196893739,14.0053876592716,19.477751769288,17.3702298108333,12.7906470871878,33.307023094179,18.8913379234209,20.0842040010759,18.9802026964987,17.3989353729765,15.4484843413821,14.8340241608408,18.2831842453702,23.3217160798441,17.7786746274923,16.7647926734175,20.0940514749907,18.0734756833153,9.5187920796559,10.0765045673034,9.81219814011409,25.7761066864081,18.663823621287,17.0788352386553,14.688726351765,15.8907104970996,16.3771922809633,16.8580432981026,16.1174238664405,15.9671124610258,22.1641604328966,16.1548221402601,7.89170114157866,19.5866675317612,18.8622679121091,18.6673140810286,14.5950600529836,14.6991829176977,12.0877955805127,18.7494314175288,18.2455259300737,9.42178071221424,8.3528701814781,20.2247117202034,20.8806971748869,20.9530352616248,19.7479650926248,17.5446161754132,19.8681354781265,15.385017538556,17.2796746794255,20.7990886893184,23.090662416465,20.4677155827786,23.3898913775406,23.956748568442,23.1416266319507,17.9117003056017,8.21348027484039,11.2142320761845,7.72269235274761,18.9325802151547,18.9559300205694,18.8646172995283,18.0069438426415,21.5676004735206,6.7770221114048,5.9842280745933,7.44764167471216,9.10821866421544,12.3314853558716,13.5970901530146,10.1253375034771,16.6618845192962,16.3131267234314,9.83744592328458,19.8233833885777,15.1629451892392,16.0489589408886,15.3157231753025,12.367176595051,14.5236371675511,14.0015438515018,16.0707344646337,12.5158491740808,12.8875577999537,12.673964994512,15.0901073108861,18.2600939566271,19.9758475503192,19.757801320731,13.8125170472091,17.1508802398386,20.255468148689,18.9559514369521,16.9278758154557,17.8292011240416,15.795346748181,15.9752247264705,13.6625631634389,15.1516102468682,15.3998586362851,16.4635175585495,17.8887403777733,16.8397101168869,14.0285567914435,16.6089025373844,18.0263202747281,16.7784727699573,18.5924209423159,13.3105561576988,15.4882558321526,14.9716229405061,12.247650080753,12.6250299165437,15.8825821766051,16.2307484934295|short_description=p1@Hmg20b}} | ||
|EntrezGene=15353 | |||
|HGNC= | |||
|UniProt=Q9Z104,E9Q2W1,Q3U1L0,Q3U1Z7,Q05DT2 | |||
|association_with_transcript=0bp_to_ENSMUST00000020454,ENSMUST00000105324,ENSMUST00000140160,ENSMUST00000154609,NM_001163165,NM_001163166,NM_010440,uc007ghk.2,uc007ghl.2,uc007ghm.2,uc007ghn.2_5end | |||
|description=CAGE_peak_1_at_Hmg20b_5end | |||
|id=chr10:80813134..80813211,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!1.87e-11!88;UBERON:0000926!4.03e-09!193;UBERON:0004120!4.03e-09!193;UBERON:0006603!4.03e-09!193;UBERON:0001048!6.86e-07!147 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,6.30e-11,87;UBERON:0000926,4.68e-10,120;UBERON:0004120,4.68e-10,120;UBERON:0006603,4.68e-10,120;UBERON:0001048,3.36e-07,134;UBERON:0000153,5.83e-07,43 | |||
|phase1_expression=22.7411362888807,30.0118850569851,27.2999543633722,29.0365642854557,37.0662840160297,16.6200479192771,11.6806320297763,20.1432384568859,3.09735188733667,4.44722600011788,12.6701296486874,12.4444568032725,19.5168832121575,21.5054189950734,11.9919514253639,15.9955461237963,15.3903613188192,27.1297462208084,21.8011949433125,28.434106670468,17.6039610612714,12.2127869977089,11.2315909329742,12.6394014006791,11.9292826154928,21.8208146363708,18.9535278309993,17.8841123129288,17.6721780094428,11.5933859689568,10.4213340007993,7.62036808151557,7.38077745101484,0,10.3986583110459,9.14290549471708,10.6168065256432,17.5783284909501,18.7520482685712,10.9939986234498,15.2940186888064,19.8083190637949,19.9059244742773,15.7371022469472,13.787262645854,18.1711284640065,32.8604364626176,25.2909181401318,23.726107735323,16.7209713203884,17.9182619680464,25.8754615856949,22.8184344238521,12.3311564141929,20.1656279485478,10.8048963135098,14.3266719969378,16.5015069528782,12.9482534950143,10.5798195854407,12.0427966666174,18.9752937958714,12.450127145556,25.6471419425199,23.7327927016074,29.1296847127901,29.9600110518405,37.6533939215123,16.9014068062819,17.5507719831198,17.0363218694619,14.568200204594,14.5773237028065,13.229006315215,15.5269663049543,10.1114066527102,12.1127469099328,11.1087984134113,11.0596703944495,10.1552441552249,11.5274430939036,12.5019208933622,10.3297709630511,7.31591393041184,11.9182633265912,10.0173719061047,9.96601765593721,11.183966749518,13.5549886066399,14.6608826607164,19.7107852317141,10.3250865237766,12.2394840067395,14.0322829825832,12.3457519315057,13.4408066129201,15.1679973742292,16.7021716126497,15.846946280775,14.1335829804136,25.3518155598025,17.9657068380045,40.7688383530633,63.9960032837998,9.52560580449342,10.8944742154292,12.1325866803548,13.8162494460063,47.3856327074324,13.5082346548991,13.1848848342263,13.3964810457342,14.2981608298756,13.2635923686308,15.4041206347773,23.8766523526383,19.0340125155468,13.5923395504717,7.96149496754887,16.5002186946357,17.8881629952919,18.9101348722737,9.31958806090611,14.0534782565543,17.1746299587033,18.6483650302272,9.34557971146178,9.59844369589452,8.38663498682227,11.5338792341713,15.0975198930147,5.15182843662744,12.5153510538439,9.2057564638919,12.6750707181332,13.7905073607594,18.7384429484582,18.5366386209039,28.0522261861379,16.6249066150314,20.8192708740326,19.0818746679783,19.4467100189777,18.536692593793,18.4378912700098,18.8327168818729,19.3025552593041,21.4723797713383,21.1256633074185,20.2343505779567,20.586281527182,20.3852031157645,17.7950239504383,17.4126083261083,23.8707278233214,21.6947350832158,7.02213187313235,10.808612098818,14.2081749697796,18.4341937556597,20.8728193383176,21.6074473753218,24.6214525008619,22.8246508826988,28.0766145455028,29.5318109833018,28.16870714696,23.8201298429026,30.4435722339939,29.221808606079,24.3206428637567,24.1229979251798,21.9550115291051,17.312628020088,13.6688466566683,12.2456488731348,29.407271685558,14.5447811664949,18.9826542976358,15.5598570146494,17.1393723558384,12.1010114774006,12.2307924114679,13.1255682017666,14.7104009078799,10.3760341476127,12.8180956488137,16.1154742353332,14.4273424468149,15.2799299471218,18.371734239349,17.5244320463843,20.4841333029328,18.1655135049469,25.9227792048085,16.4957575554705,16.6799138964158,17.8846340720312,21.5004226222475,18.1560482014911,18.0548537017581,18.0159859325829,13.6368208460088,12.8470731401392,12.9728936774714,11.4679677316275,13.1859078902527,12.0588579876208,12.4766667372896,13.5217184601881,10.7009249671523,12.6298250066517,7.18841032636773,13.7692150637346,16.2259590019572,16.4176270665623,18.6573310062789,15.9206362049911,17.3667998756608,17.0542270593436,14.8298128562244,14.9375675482166,19.4792906079457,22.9483572695288,16.1869675802489,28.4895125872386,20.0196633014863,25.4684393096091,29.6585869702926,23.9240439484977,24.5212674249572,21.9866569043898,22.6186925908908,5.4390568381871,14.7529281905711,14.6246475541508,13.9679013289379,13.0104972117346,10.8197063948606,12.3710754330143,14.8288863125641,13.2749173060857,14.6487910458303,15.5329718669159,16.7099005561796,18.9661275628518,10.1202675418724,12.8592577480977,16.2067988958075,14.4594592389813,19.5877317587411,23.1485284767432,14.8227133011754,22.2709666012923,19.9117707509944,14.3240575331439,14.511530734308,14.7111962209601,17.7181135728464,15.6791925451403,16.0225541764297,18.1766864738753,16.7553767840819,14.8537276229834,10.5418608574999,13.4076206222643,27.9160476718106,20.7070258136007,25.0955846538544,19.2903331528433,16.3153014950892,17.1234064897988,13.4930196893739,14.0053876592716,19.477751769288,17.3702298108333,12.7906470871878,33.307023094179,18.8913379234209,20.0842040010759,18.9802026964987,17.3989353729765,15.4484843413821,14.8340241608408,18.2831842453702,23.3217160798441,17.7786746274923,16.7647926734175,20.0940514749907,18.0734756833153,9.5187920796559,10.0765045673034,9.81219814011409,25.7761066864081,18.663823621287,17.0788352386553,14.688726351765,15.8907104970996,16.3771922809633,16.8580432981026,16.1174238664405,15.9671124610258,22.1641604328966,16.1548221402601,7.89170114157866,19.5866675317612,18.8622679121091,18.6673140810286,14.5950600529836,14.6991829176977,12.0877955805127,18.7494314175288,18.2455259300737,9.42178071221424,8.3528701814781,20.2247117202034,20.8806971748869,20.9530352616248,19.7479650926248,17.5446161754132,19.8681354781265,15.385017538556,17.2796746794255,20.7990886893184,23.090662416465,20.4677155827786,23.3898913775406,23.956748568442,23.1416266319507,17.9117003056017,8.21348027484039,11.2142320761845,7.72269235274761,18.9325802151547,18.9559300205694,18.8646172995283,18.0069438426415,21.5676004735206,6.7770221114048,5.9842280745933,7.44764167471216,9.10821866421544,12.3314853558716,13.5970901530146,10.1253375034771,16.6618845192962,16.3131267234314,9.83744592328458,19.8233833885777,15.1629451892392,16.0489589408886,15.3157231753025,12.367176595051,14.5236371675511,14.0015438515018,16.0707344646337,12.5158491740808,12.8875577999537,12.673964994512,15.0901073108861,18.2600939566271,19.9758475503192,19.757801320731,13.8125170472091,17.1508802398386,20.255468148689,18.9559514369521,16.9278758154557,17.8292011240416,15.795346748181,15.9752247264705,13.6625631634389,15.1516102468682,15.3998586362851,16.4635175585495,17.8887403777733,16.8397101168869,14.0285567914435,16.6089025373844,18.0263202747281,16.7784727699573,18.5924209423159,13.3105561576988,15.4882558321526,14.9716229405061,12.247650080753,12.6250299165437,15.8825821766051,16.2307484934295 | |||
|short_description=p1@Hmg20b | |||
}} | |||
Revision as of 17:42, 12 September 2013
| Short description: | p1@Hmg20b |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Hmg20b_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 0bp_to_ENSMUST00000020454, ENSMUST00000105324, ENSMUST00000140160, ENSMUST00000154609, NM_001163165, NM_001163166, NM_010440, uc007ghk.2, uc007ghl.2, uc007ghm.2, uc007ghn.2_5end |
| EntrezGene: | Hmg20b |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| lateral plate mesoderm | 6.30e-11 | 87 |
| mesoderm | 4.68e-10 | 120 |
| mesoderm-derived structure | 4.68e-10 | 120 |
| presumptive mesoderm | 4.68e-10 | 120 |
| primordium | 3.36e-07 | 134 |
| anterior region of body | 5.83e-07 | 43 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
