NonredundantMotifs:21: Difference between revisions
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|entrez_gene_id=6668
|motif_cluster_2013_march_motif_members= /SWISSREGULON:E2F1..5.p2~TFDP1.p2 /HOMER:E2F7_Hela-E2F7-ChIP-Seq(GSE32673)~E2F1_Hela-E2F1-ChIP-...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id=6668 | |entrez_gene_id=6668 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:E2F1..5.p2~TFDP1.p2 /HOMER:E2F7_Hela-E2F7-ChIP-Seq(GSE32673)~E2F1_Hela-E2F1-ChIP-Seq | |motif_cluster_2013_march_motif_members= /JASPAR:MA0024.1;E2F1 /HOCOMOCO:E2F6_f1~E2F4_do~E2F2_f1~E2F7_f1~E2F1_f2~TFDP1_f1~E2F3_si~E2F5_do~SP2_si /SWISSREGULON:E2F1..5.p2~TFDP1.p2 /HOMER:E2F7_Hela-E2F7-ChIP-Seq(GSE32673)~E2F1_Hela-E2F1-ChIP-Seq /UNIPROBE:Smad3_secondary;SCI09 | ||
|name=known21 | |name=known21 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
Revision as of 16:20, 1 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known21
- db :HOCOMOCO
- Id :SP2_si
- name :
- score :4.312902901611167
- External refs:
- Internal refs:
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Sub Motif Members
