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NonredundantMotifs:28: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=PO;A;C;G;T!1;66.182994;8.551344;2.003484;282.864563999999!2;50.118493;1.767241;170.113212;137.60344!3;93.8878240000001;1.982836;79.616861;184.114865!4;0.561712;296.779055;0.731482;61.530137!5;155.456632;19.389437;177.790795;6.965522!6;1.257013;35.383744;317.793158999999;5.16847!7;0.445108;0;0;359.157278!8;0;0;0;359.602386
|PWM=PO;A;C;G;T!1;66.182994;8.551344;2.003484;282.864563999999!2;50.118493;1.767241;170.113212;137.60344!3;93.8878240000001;1.982836;79.616861;184.114865!4;0.561712;296.779055;0.731482;61.530137!5;155.456632;19.389437;177.790795;6.965522!6;1.257013;35.383744;317.793158999999;5.16847!7;0.445108;0;0;359.157278!8;0;0;0;359.602386
|entrez_gene_id=
|entrez_gene_id=DMAP1_NCOR(1,2)_SMARC
|motif_cluster_2013_march_motif_members= /SWISSREGULON:DMAP1_NCOR(1,2)_SMARC.p2~MYB.p2~MYBL2.p2 /JASPAR:MA0100.1;Myb /HOMER:MYB_ERMYB-Myb-ChIPSeq(GSE22095)~MYBL2_Hela-BMYB-ChIPSeq(GSE27030) /UNIPROBE:Myb_primary;SCI09~Mybl1_primary;SCI09~Mybl1_secondary;SCI09~Myb_secondary;SCI09 /HOCOMOCO:OVOL1_f1~MYB_f1
|motif_cluster_2013_march_motif_members= /JASPAR:MA0100.1;Myb /SWISSREGULON:DMAP1_NCOR(1,2)_SMARC.p2~MYB.p2~MYBL2.p2 /HOMER:MYB_ERMYB-Myb-ChIPSeq(GSE22095)~MYBL2_Hela-BMYB-ChIPSeq(GSE27030) /UNIPROBE:Myb_primary;SCI09~Mybl1_primary;SCI09~Mybl1_secondary;SCI09~Myb_secondary;SCI09 /HOCOMOCO:OVOL1_f1~MYB_f1
|name=known28
|name=known28
|representative_motif_db=SWISSREGULON
|representative_motif_db=SWISSREGULON
|representative_motif_id=DMAP1_NCOR(1,2)_SMARC.p2
|representative_motif_id=DMAP1_NCOR(1,2)_SMARC.p2
|representative_motif_name=  
|representative_motif_name=DMAP1_NCOR(1,2)_SMARC
|score=0.2074314320749557
|score=0.2074314320749557
|uniprot_entry_name=
|uniprot_entry_name=DMAP1_NCOR(1,2)_SMARC
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]

Revision as of 12:09, 13 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known28
  • db :SWISSREGULON
  • Id :DMAP1_NCOR(1,2)_SMARC.p2
  • name :DMAP1_NCOR(1,2)_SMARC
  • score :0.2074314320749557
  • External refs:
EntrezGene:DMAP1_NCOR(1
UniProt:DMAP1_NCOR(1

EntrezGene:2)_SMARC
UniProt:2)_SMARC

  • Internal refs:
EntrezGene:DMAP1_NCOR(1

EntrezGene:2)_SMARC


Motif matrix
POACGT
166.1829948.5513442.003484282.864563999999
250.1184931.767241170.113212137.60344
393.88782400000011.98283679.616861184.114865
40.561712296.7790550.73148261.530137
5155.45663219.389437177.7907956.965522
61.25701335.383744317.7931589999995.16847
70.44510800359.157278
8000359.602386

Sub Motif Members