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NonredundantMotifs:33: Difference between revisions

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|PWM=P0;A;C;G;T!1;0.114461549089786;0.345602359480712;0.289353230115255;0.250582861314247!2;0.192593287280278;0.25084449306752;0.116249624289927;0.440312595362275!3;0.338837829775925;0.304929261569313;0.195842542660874;0.160390365993888!4;0.312050850750647;0.115094331804079;0.162464735073906;0.410390082371368!5;0.143974706097306;0.600491735865346;0.123348444974066;0.132185113063283!6;0.0787505509789436;0.715072296499343;0.135182198816251;0.0709949537054629!7;0.146190741113154;0.685571209381871;0.0697987838749943;0.0984392656299799!8;0.137287160991388;0.646077925711715;0.126428373195834;0.0902065401010639!9;0.335099485079304;0.092260135908066;0.371509553068663;0.201130825943967!10;0.0330897683707383;0.631176315968281;0.0742775759527978;0.261456339708183!11;0.117515920775723;0.61933603047287;0.100945801616778;0.16220224713463!12;0.114768535685947;0.627362280511385;0.089838663325904;0.168030520476764!13;0.195787120472725;0.252056868434976;0.220803412375946;0.331352598716354!14;0.415354533744615;0.120731214471652;0.281372401522544;0.182541850261189!15;0.111178497182706;0.21707870954717;0.245769053622707;0.425973739647418!16;0.191516791851432;0.296951942197243;0.153369544849602;0.358161721101723
|PWM=P0;A;C;G;T!1;0.114461549089786;0.345602359480712;0.289353230115255;0.250582861314247!2;0.192593287280278;0.25084449306752;0.116249624289927;0.440312595362275!3;0.338837829775925;0.304929261569313;0.195842542660874;0.160390365993888!4;0.312050850750647;0.115094331804079;0.162464735073906;0.410390082371368!5;0.143974706097306;0.600491735865346;0.123348444974066;0.132185113063283!6;0.0787505509789436;0.715072296499343;0.135182198816251;0.0709949537054629!7;0.146190741113154;0.685571209381871;0.0697987838749943;0.0984392656299799!8;0.137287160991388;0.646077925711715;0.126428373195834;0.0902065401010639!9;0.335099485079304;0.092260135908066;0.371509553068663;0.201130825943967!10;0.0330897683707383;0.631176315968281;0.0742775759527978;0.261456339708183!11;0.117515920775723;0.61933603047287;0.100945801616778;0.16220224713463!12;0.114768535685947;0.627362280511385;0.089838663325904;0.168030520476764!13;0.195787120472725;0.252056868434976;0.220803412375946;0.331352598716354!14;0.415354533744615;0.120731214471652;0.281372401522544;0.182541850261189!15;0.111178497182706;0.21707870954717;0.245769053622707;0.425973739647418!16;0.191516791851432;0.296951942197243;0.153369544849602;0.358161721101723
|entrez_gene_id=430
|entrez_gene_id=430
|motif_cluster_2013_march_motif_members= /SWISSREGULON:ZNF148.p2~KLF4.p3 /JASPAR:MA0039.2;Klf4 /HOMER:KLF4_mES-Klf4-ChIP-Seq~KLF1_Erythrocyte-Klf1-ChIP-Seq /UNIPROBE:Ascl2_secondary;SCI09~Sox13_secondary;SCI09~Klf7_primary;SCI09 /HOCOMOCO:KLF1_f1~KLF4_f2~KLF3_f1
|motif_cluster_2013_march_motif_members= /JASPAR:MA0039.2;Klf4 /SWISSREGULON:ZNF148.p2~KLF4.p3 /HOMER:KLF4_mES-Klf4-ChIP-Seq~KLF1_Erythrocyte-Klf1-ChIP-Seq /UNIPROBE:Ascl2_secondary;SCI09~Sox13_secondary;SCI09~Klf7_primary;SCI09 /HOCOMOCO:KLF1_f1~KLF4_f2~KLF3_f1
|name=known33
|name=known33
|representative_motif_db=UNIPROBE
|representative_motif_db=UNIPROBE

Revision as of 12:09, 13 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known33
  • db :UNIPROBE
  • Id :Ascl2_secondary
  • name :SCI09
  • score :3.3437027120298133
  • External refs:
EntrezGene:430
UniProt:430

  • Internal refs:
EntrezGene:430


Motif matrix
P0ACGT
10.1144615490897860.3456023594807120.2893532301152550.250582861314247
20.1925932872802780.250844493067520.1162496242899270.440312595362275
30.3388378297759250.3049292615693130.1958425426608740.160390365993888
40.3120508507506470.1150943318040790.1624647350739060.410390082371368
50.1439747060973060.6004917358653460.1233484449740660.132185113063283
60.07875055097894360.7150722964993430.1351821988162510.0709949537054629
70.1461907411131540.6855712093818710.06979878387499430.0984392656299799
80.1372871609913880.6460779257117150.1264283731958340.0902065401010639
90.3350994850793040.0922601359080660.3715095530686630.201130825943967
100.03308976837073830.6311763159682810.07427757595279780.261456339708183
110.1175159207757230.619336030472870.1009458016167780.16220224713463
120.1147685356859470.6273622805113850.0898386633259040.168030520476764
130.1957871204727250.2520568684349760.2208034123759460.331352598716354
140.4153545337446150.1207312144716520.2813724015225440.182541850261189
150.1111784971827060.217078709547170.2457690536227070.425973739647418
160.1915167918514320.2969519421972430.1533695448496020.358161721101723

Sub Motif Members

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