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NonredundantMotifs:124: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=PO;A;C;G;T!1;190.588231;58.225336;37.529591;7.642382!2;187.997023;12.310246;11.795105;81.883166!3;16.964664;116.348133;91.817924;68.854819!4;22.333747;174.317872;18.360546;78.973375!5;217.449331;36.605219;17.471784;22.459206!6;52.859072;155.887157;35.124544;50.114767!7;288.657783;3.385558;1.454079;0.48812!8;276.666681;6.562214;9.483289;1.273356!9;10.035279;25.358044;14.497796;244.094421!10;264.797942;15.340735;9.546525;4.300338!11;2.857382;210.70865;7.142706;73.276802!12;107.641406;124.852471;16.179014;45.312649!13;164.846367;61.779998;65.145906;2.213269!14;214.17431;39.15656;31.877775;8.776895
|PWM=PO;A;C;G;T!1;190.588231;58.225336;37.529591;7.642382!2;187.997023;12.310246;11.795105;81.883166!3;16.964664;116.348133;91.817924;68.854819!4;22.333747;174.317872;18.360546;78.973375!5;217.449331;36.605219;17.471784;22.459206!6;52.859072;155.887157;35.124544;50.114767!7;288.657783;3.385558;1.454079;0.48812!8;276.666681;6.562214;9.483289;1.273356!9;10.035279;25.358044;14.497796;244.094421!10;264.797942;15.340735;9.546525;4.300338!11;2.857382;210.70865;7.142706;73.276802!12;107.641406;124.852471;16.179014;45.312649!13;164.846367;61.779998;65.145906;2.213269!14;214.17431;39.15656;31.877775;8.776895
|entrez_gene_id=
|entrez_gene_id=ARID5B
|motif_cluster_2013_march_motif_members= /SWISSREGULON:ARID5B.p2 /HOCOMOCO:ARI5B_f1
|motif_cluster_2013_march_motif_members= /SWISSREGULON:ARID5B.p2 /HOCOMOCO:ARI5B_f1
|name=known124
|name=known124
|representative_motif_db=SWISSREGULON
|representative_motif_db=SWISSREGULON
|representative_motif_id=ARID5B.p2
|representative_motif_id=ARID5B.p2
|representative_motif_name=  
|representative_motif_name=ARID5B
|score=0.05444044064092106
|score=0.05444044064092106
|uniprot_entry_name=
|uniprot_entry_name=ARID5B
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]

Revision as of 12:09, 13 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known124
  • db :SWISSREGULON
  • Id :ARID5B.p2
  • name :ARID5B
  • score :0.05444044064092106
  • External refs:
EntrezGene:ARID5B
UniProt:ARID5B

  • Internal refs:
EntrezGene:ARID5B


Motif matrix
POACGT
1190.58823158.22533637.5295917.642382
2187.99702312.31024611.79510581.883166
316.964664116.34813391.81792468.854819
422.333747174.31787218.36054678.973375
5217.44933136.60521917.47178422.459206
652.859072155.88715735.12454450.114767
7288.6577833.3855581.4540790.48812
8276.6666816.5622149.4832891.273356
910.03527925.35804414.497796244.094421
10264.79794215.3407359.5465254.300338
112.857382210.708657.14270673.276802
12107.641406124.85247116.17901445.312649
13164.84636761.77999865.1459062.213269
14214.1743139.1565631.8777758.776895

Sub Motif Members