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NonredundantMotifs:175: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;26.356958;1.843132;5.774665;19.352389!2;4.343436;27.139605;14.620182;7.223921!3;39.164879;4.986899;0.783074;8.392292!4;3.709227;17.715424;19.696678;12.205815!5;5.100757;13.464341;0.342207;34.419839!6;10.314864;21.39085;7.767938;13.853492!7;28.997275;7.044427;5.580705;11.704737!8;8.634523;5.082359;1.236371;38.373891!9;1.345151;4.546671;43.719455;3.715867!10;13.595815;30.123458;6.979171;2.6287!11;25.660878;0.980055;25.637755;1.048456!12;0.553636;1.574121;1.249371;49.950016!13;0.925279;0;50.012949;2.388916!14;31.431639;2.898633;18.545691;0.451181!15;20.290425;4.284044;24.373452;4.379223!16;13.481204;10.911444;8.091109;20.843387!17;11.18345;12.534003;6.086029;23.523662!18;19.40033;14.342068;13.879891;5.704855
|PWM=P0;A;C;G;T!1;26.356958;1.843132;5.774665;19.352389!2;4.343436;27.139605;14.620182;7.223921!3;39.164879;4.986899;0.783074;8.392292!4;3.709227;17.715424;19.696678;12.205815!5;5.100757;13.464341;0.342207;34.419839!6;10.314864;21.39085;7.767938;13.853492!7;28.997275;7.044427;5.580705;11.704737!8;8.634523;5.082359;1.236371;38.373891!9;1.345151;4.546671;43.719455;3.715867!10;13.595815;30.123458;6.979171;2.6287!11;25.660878;0.980055;25.637755;1.048456!12;0.553636;1.574121;1.249371;49.950016!13;0.925279;0;50.012949;2.388916!14;31.431639;2.898633;18.545691;0.451181!15;20.290425;4.284044;24.373452;4.379223!16;13.481204;10.911444;8.091109;20.843387!17;11.18345;12.534003;6.086029;23.523662!18;19.40033;14.342068;13.879891;5.704855
|entrez_gene_id=
|entrez_gene_id=PAX8
|motif_cluster_2013_march_motif_members= /SWISSREGULON:PAX8.p2
|motif_cluster_2013_march_motif_members= /SWISSREGULON:PAX8.p2
|name=known175
|name=known175
|representative_motif_db=SWISSREGULON
|representative_motif_db=SWISSREGULON
|representative_motif_id=PAX8.p2
|representative_motif_id=PAX8.p2
|representative_motif_name=  
|representative_motif_name=PAX8
|score=0.11612505426120512
|score=0.11612505426120512
|uniprot_entry_name=
|uniprot_entry_name=PAX8
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]

Revision as of 12:09, 13 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known175
  • db :SWISSREGULON
  • Id :PAX8.p2
  • name :PAX8
  • score :0.11612505426120512
  • External refs:
EntrezGene:PAX8
UniProt:PAX8

  • Internal refs:
EntrezGene:PAX8


Motif matrix
P0ACGT
126.3569581.8431325.77466519.352389
24.34343627.13960514.6201827.223921
339.1648794.9868990.7830748.392292
43.70922717.71542419.69667812.205815
55.10075713.4643410.34220734.419839
610.31486421.390857.76793813.853492
728.9972757.0444275.58070511.704737
88.6345235.0823591.23637138.373891
91.3451514.54667143.7194553.715867
1013.59581530.1234586.9791712.6287
1125.6608780.98005525.6377551.048456
120.5536361.5741211.24937149.950016
130.925279050.0129492.388916
1431.4316392.89863318.5456910.451181
1520.2904254.28404424.3734524.379223
1613.48120410.9114448.09110920.843387
1711.1834512.5340036.08602923.523662
1819.4003314.34206813.8798915.704855

Sub Motif Members