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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;28.498291092771634;2.5085445361420007;11.58886317587679;4.515380165055598!2;47.111078969846;0.0;0.0;0.0!3;0.0;0.0;0.0;47.111078969846!4;0.0;0.0;0.0;47.111078969846!5;47.111078969846;0.0;0.0;0.0!6;47.111078969846;0.0;0.0;0.0!7;39.083736454191595;0.0;0.0;8.027342515654405
|PWM=P0;A;C;G;T!1;0.381182074077313;0.203862617947413;0.13841947155087;0.276535836424404!2;0.273031517766875;0.44308553701601;0.157555355407916;0.126327589809199!3;0.33224501940196;0.358200499510754;0.167186995181582;0.142367485905704!4;0.288841183465351;0.389155704916314;0.252731598918779;0.0692715126995555!5;0.0597141160980617;0.852528844152906;0.0493743427221523;0.0383826970268805!6;0.00587629913745692;0.170371181244601;0.000609742794052837;0.823142776823889!7;0.857805787879249;0.0141196542143549;0.127763468715177;0.000311089191218342!8;0.983730310862334;0.00411135350853914;0.010338433054583;0.0018199025745441!9;0.0018199025745441;0.010338433054583;0.00411135350853914;0.983730310862334!10;0.000311089191218342;0.127763468715177;0.0141196542143549;0.857805787879249!11;0.823142776823889;0.000609742794052837;0.170371181244601;0.00587629913745692!12;0.0383826970268805;0.0493743427221523;0.852528844152906;0.0597141160980617!13;0.0227290466467234;0.729172770918343;0.0902000164702183;0.157898165964715!14;0.139767918745641;0.120743907182898;0.49247255365105;0.247015620420411!15;0.148964144182527;0.118691809049481;0.499320463437805;0.233023583330187!16;0.0763163315164499;0.185770198362129;0.195891743611199;0.542021726510222!17;0.18103824535373;0.136131856938946;0.512805403021513;0.170024494685811
|entrez_gene_id=1820
|entrez_gene_id=431707
|motif_cluster_2013_march_motif_members= /JASPAR:MA0125.1;Nobox~MA0063.1;Nkx2-5~MA0135.1;Lhx3~MA0075.1;Prrx2~MA0151.1;ARID3A /SWISSREGULON:NANOG.p2~VSX1,2.p2~LHX3,4.p2~PRRX1,2.p2~PDX1.p2~NKX2-3_NKX2-5.p2~ADNP_IRX_SIX_ZHX.p2 /UNIPROBE:Hoxb5_3122.2;CELL08~Meox1_2310.2;CELL08~Lhx1_2240.2;CELL08~Hmx1_3423.1;CELL08~Hoxc9_2367.2;CELL08~Hoxa1_3425.1;CELL08~Pou3f4_3773.1;CELL08~Gbx2_3110.1;CELL08~Uncx4.1_2281.2;CELL08~Barx2_3447.2;CELL08~Nkx6-3_3446.1;CELL08~Prrx2_3072.1;CELL08~Ipf1_3815.1;CELL08~Hoxb8_3780.2;CELL08~Hoxd1_3448.1;CELL08~Vax2_3500.1;CELL08~Msx3_3206.1;CELL08~Barhl2_3868.1;CELL08~En1_3123.2;CELL08~Hoxb6_3428.2;CELL08~Og2x_3719.1;CELL08~Hoxc5_2630.2;CELL08~Otp_3496.1;CELL08~Isl2_3430.1;CELL08~Dlx1_1741.2;CELL08~Hoxa3_2783.2;CELL08~Nkx6-1_2825.2;CELL08~Hoxb4_2627.1;CELL08~Hlxb9_3422.1;CELL08~Phox2a_3947.1;CELL08~Cart1_1275.1;CELL08~Hoxa4_3426.1;CELL08~Arid3a_primary;SCI09~Lhx6_2272.1;CELL08~Gbx1_2883.2;CELL08~Dbx1_3486.1;CELL08~Pou1f1_3818.1;CELL08~En2_0952.1;CELL08~Hoxd8_2644.1;CELL08~Nkx1-1_3856.3;CELL08~Hoxc8_3429.2;CELL08~Prrx1_3442.1;CELL08~Hoxc4_3491.1;CELL08~Pou6f1_1731.2;CELL08~Nkx1-2_3214.1;CELL08~Lmx1b_3433.2;CELL08~Msx1_3031.2;CELL08~Prop1_3949.1;CELL08~Pou2f1_3081.2;CELL08~Hoxa5_3415.1;CELL08~Hoxa3_primary;SCI09~Pax7_3783.1;CELL08~Evx2_2645.3;CELL08~Pou3f2_2824.1;CELL08~Vsx1_1728.1;CELL08~Cutl1_3494.1;CELL08~Pou4f3_2791.1;CELL08~Dbx2_3487.1;CELL08~Vax1_3499.1;CELL08~Pax6_3838.3;CELL08~Shox2_2641.2;CELL08~Hoxb3_1720.2;CELL08~Dlx3_1030.1;CELL08~Gsh2_3990.2;CELL08~Hoxa2_3079.1;CELL08~Hoxa7_3750.1;CELL08~Lhx4_1719.2;CELL08~Hoxb7_3953.1;CELL08~Lhx8_2247.2;CELL08~Lhx3_3431.1;CELL08~Hoxd3_1742.2;CELL08~Pou3f1_3819.1;CELL08~Hlx1_2350.1;CELL08~Lhx2_0953.2;CELL08~Barx1_2877.1;CELL08~Pax4_3989.2;CELL08~Bapx1_2343.1;CELL08~Hoxc6_3954.2;CELL08~Phox2b_3948.1;CELL08~Msx2_3449.1;CELL08~Rhox6_4251.1;CELL08~Hmx3_3490.2;CELL08~Evx1_3952.2;CELL08~Nkx6-1_2825.1;CELL08~Barhl1_2590.2;CELL08~Emx2_3420.1;CELL08~Lhx6_3432.1;CELL08~Dlx2_2273.2;CELL08~Hoxa6_1040.1;CELL08~Arx_1738.2;CELL08~Rax_3443.1;CELL08~Esx1_3124.2;CELL08~Hoxa7_2668.2;CELL08~Cart1_0997.1;CELL08~Hmx2_3424.3;CELL08~Lbx2_3869.2;CELL08~Nkx3-1_primary;SCI09~Bsx_3483.2;CELL08~Tlx2_3498.2;CELL08~Pou6f1_3733.1;CELL08~Lhx5_2279.1;CELL08~Isx_3445.1;CELL08~Dlx5_3419.2;CELL08~Lhx9_3492.1;CELL08~Alx3_3418.2;CELL08~Dlx4_3488.2;CELL08~Alx4_1744.1;CELL08~Lmx1a_2238.2;CELL08 /HOCOMOCO:HXD9_f1~LHX3_f1~DLX3_do~PO4F2_si~PDX1_do~MSX2_f1~DLX2_f1~HXD4_f1~VSX2_si~ZFHX3_f1~BARX2_si~HXC8_f1~PRRX2_f1~NOBOX_si~ARI3A_f1~HXA5_si
|motif_cluster_2013_march_motif_members= /HOCOMOCO:ZFHX3_f1~ARI3A_f1~HXD9_f1~PDX1_do~HXD4_f1~HXC8_f1~LHX3_f1~PO4F2_si~MSX2_f1~BARX2_si~PRRX2_f1~DLX2_f1~DLX3_do~VSX2_si~NOBOX_si~HXA5_si /JASPAR:MA0125.1;Nobox~MA0063.1;Nkx2-5~MA0075.1;Prrx2~MA0135.1;Lhx3~MA0151.1;ARID3A /SWISSREGULON:VSX1,2.p2~ADNP_IRX_SIX_ZHX.p2~LHX3,4.p2~PDX1.p2~NKX2-3_NKX2-5.p2~NANOG.p2~PRRX1,2.p2 /UNIPROBE:Msx2_3449.1;CELL08~Hoxa7_3750.1;CELL08~Vax2_3500.1;CELL08~Hoxb7_3953.1;CELL08~Hlxb9_3422.1;CELL08~Hoxa3_primary;SCI09~Lhx6_3432.1;CELL08~Lhx8_2247.2;CELL08~Evx2_2645.3;CELL08~Lhx4_1719.2;CELL08~Gbx1_2883.2;CELL08~Isx_3445.1;CELL08~Gbx2_3110.1;CELL08~Nkx1-1_3856.3;CELL08~Barx1_2877.1;CELL08~Dlx1_1741.2;CELL08~Msx1_3031.2;CELL08~Pou2f1_3081.2;CELL08~Emx2_3420.1;CELL08~Pou6f1_1731.2;CELL08~Pou6f1_3733.1;CELL08~Isl2_3430.1;CELL08~Evx1_3952.2;CELL08~Dlx3_1030.1;CELL08~Dlx4_3488.2;CELL08~Barx2_3447.2;CELL08~Dlx5_3419.2;CELL08~Bsx_3483.2;CELL08~Dlx2_2273.2;CELL08~Hoxb5_3122.2;CELL08~Hoxa5_3415.1;CELL08~Hoxa2_3079.1;CELL08~Meox1_2310.2;CELL08~Vax1_3499.1;CELL08~Hoxd3_1742.2;CELL08~Gsh2_3990.2;CELL08~Hoxa6_1040.1;CELL08~Hoxc8_3429.2;CELL08~Hoxb4_2627.1;CELL08~Hoxc4_3491.1;CELL08~Hoxc5_2630.2;CELL08~Hoxa4_3426.1;CELL08~Hoxa7_2668.2;CELL08~Hoxc6_3954.2;CELL08~Hoxb6_3428.2;CELL08~Vsx1_1728.1;CELL08~Phox2a_3947.1;CELL08~Alx3_3418.2;CELL08~Lhx2_0953.2;CELL08~Rax_3443.1;CELL08~Arx_1738.2;CELL08~Esx1_3124.2;CELL08~Prrx2_3072.1;CELL08~Lbx2_3869.2;CELL08~Nkx1-2_3214.1;CELL08~En2_0952.1;CELL08~Lhx6_2272.1;CELL08~Og2x_3719.1;CELL08~Alx4_1744.1;CELL08~Cart1_0997.1;CELL08~Lhx9_3492.1;CELL08~Shox2_2641.2;CELL08~Prrx1_3442.1;CELL08~Pax6_3838.3;CELL08~Lhx5_2279.1;CELL08~Lhx1_2240.2;CELL08~Lmx1b_3433.2;CELL08~Lmx1a_2238.2;CELL08~Lhx3_3431.1;CELL08~Cart1_1275.1;CELL08~Prop1_3949.1;CELL08~Uncx4.1_2281.2;CELL08~Otp_3496.1;CELL08~Phox2b_3948.1;CELL08~Nkx3-1_primary;SCI09~Pax7_3783.1;CELL08~Pax4_3989.2;CELL08~Rhox6_4251.1;CELL08~Hoxb3_1720.2;CELL08~Bapx1_2343.1;CELL08~Hmx1_3423.1;CELL08~Barhl2_3868.1;CELL08~Barhl1_2590.2;CELL08~Msx3_3206.1;CELL08~En1_3123.2;CELL08~Hmx2_3424.3;CELL08~Hmx3_3490.2;CELL08~Ipf1_3815.1;CELL08~Hoxa1_3425.1;CELL08~Hoxc9_2367.2;CELL08~Hoxb8_3780.2;CELL08~Nkx6-1_2825.1;CELL08~Nkx6-3_3446.1;CELL08~Nkx6-1_2825.2;CELL08~Pou4f3_2791.1;CELL08~Dbx2_3487.1;CELL08~Cutl1_3494.1;CELL08~Hoxd1_3448.1;CELL08~Arid3a_primary;SCI09~Pou1f1_3818.1;CELL08~Pou3f4_3773.1;CELL08~Pou3f1_3819.1;CELL08~Hlx1_2350.1;CELL08~Tlx2_3498.2;CELL08~Hoxd8_2644.1;CELL08~Dbx1_3486.1;CELL08~Hoxa3_2783.2;CELL08~Pou3f2_2824.1;CELL08
|name=known1
|name=non-redundant1
|representative_motif_db=HOCOMOCO
|representative_motif_db=UNIPROBE
|representative_motif_id=ARI3A_f1
|representative_motif_id=Lhx8_2247.2
|representative_motif_name=  
|representative_motif_name=CELL08
|score=0.16970272024724345
|score=0.1453959787096941
|uniprot_entry_name=ARI3A_HUMAN
|uniprot_entry_name=LHX8_HUMAN
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:06, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant1
  • db :UNIPROBE
  • Id :Lhx8_2247.2
  • name :CELL08
  • score :0.1453959787096941
  • External refs:
EntrezGene:431707
UniProt:431707

  • Internal refs:
EntrezGene:431707


Motif matrix
P0ACGT
10.3811820740773130.2038626179474130.138419471550870.276535836424404
20.2730315177668750.443085537016010.1575553554079160.126327589809199
30.332245019401960.3582004995107540.1671869951815820.142367485905704
40.2888411834653510.3891557049163140.2527315989187790.0692715126995555
50.05971411609806170.8525288441529060.04937434272215230.0383826970268805
60.005876299137456920.1703711812446010.0006097427940528370.823142776823889
70.8578057878792490.01411965421435490.1277634687151770.000311089191218342
80.9837303108623340.004111353508539140.0103384330545830.0018199025745441
90.00181990257454410.0103384330545830.004111353508539140.983730310862334
100.0003110891912183420.1277634687151770.01411965421435490.857805787879249
110.8231427768238890.0006097427940528370.1703711812446010.00587629913745692
120.03838269702688050.04937434272215230.8525288441529060.0597141160980617
130.02272904664672340.7291727709183430.09020001647021830.157898165964715
140.1397679187456410.1207439071828980.492472553651050.247015620420411
150.1489641441825270.1186918090494810.4993204634378050.233023583330187
160.07631633151644990.1857701983621290.1958917436111990.542021726510222
170.181038245353730.1361318569389460.5128054030215130.170024494685811

Sub Motif Members