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Revision as of 17:22, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant44
  • db :SWISSREGULON
  • Id :TP53.p2
  • name :TP53
  • score :1.0330824947633266
  • External refs:
EntrezGene:TP53
UniProt:TP53

  • Internal refs:
EntrezGene:TP53


Motif matrix
POACGT
124.83319449.90966212.7415555.420911
222.44411725.78953634.7019539.969716
318.784722072.2384521.882148
432.427396060.4779260
520.1892530.8810866.4113595.42363
6092.06354300.841779
785.6567362.5924643.6561610.999961
88.1113162.65769712.6570269.479289
900.85018892.0551340
103.88995460.4374332.52814526.04979
111.74235470.7052437.57441412.883311
121.84755949.92477531.04385510.089133
135.2427772.84586275.8075019.009182
148.123152072.81608511.966085
1525.88775066.1040640.913508
169.19606465.58392216.2111541.914182
1756.7579663.9672734.80063827.379445
1816.192636016.66713960.045547
191.8879789.65965477.6127743.744916
2013.1834418.1793374.49609257.046453

Sub Motif Members