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Revision as of 09:49, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant1
  • db :UNIPROBE
  • Id :Lhx8_2247.2
  • name :CELL08
  • score :0.1453959787096941
  • External refs:
EntrezGene:431707
UniProt:431707

  • Internal refs:
EntrezGene:431707


Motif matrix
P0ACGT
10.3811820740773130.2038626179474130.138419471550870.276535836424404
20.2730315177668750.443085537016010.1575553554079160.126327589809199
30.332245019401960.3582004995107540.1671869951815820.142367485905704
40.2888411834653510.3891557049163140.2527315989187790.0692715126995555
50.05971411609806170.8525288441529060.04937434272215230.0383826970268805
60.005876299137456920.1703711812446010.0006097427940528370.823142776823889
70.8578057878792490.01411965421435490.1277634687151770.000311089191218342
80.9837303108623340.004111353508539140.0103384330545830.0018199025745441
90.00181990257454410.0103384330545830.004111353508539140.983730310862334
100.0003110891912183420.1277634687151770.01411965421435490.857805787879249
110.8231427768238890.0006097427940528370.1703711812446010.00587629913745692
120.03838269702688050.04937434272215230.8525288441529060.0597141160980617
130.02272904664672340.7291727709183430.09020001647021830.157898165964715
140.1397679187456410.1207439071828980.492472553651050.247015620420411
150.1489641441825270.1186918090494810.4993204634378050.233023583330187
160.07631633151644990.1857701983621290.1958917436111990.542021726510222
170.181038245353730.1361318569389460.5128054030215130.170024494685811

Sub Motif Members