FFCP PHASE1:Hg19::chr11:1942580..1942639,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7140|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11950|TSSclassifier=S|UniProt=P45378|association_with_transcript=0bp_to_ENST00000381558_5end|coexpression_cluster_id=C134|description=CAGE_peak_2_at_TNNT3_5end|id=chr11:1942580..1942639,+|ontology_enrichment_celltype=CL:0000188!6.51e-12!9|ontology_enrichment_celltype_v019=CL:0000188;1.79e-24;9!CL:0002537;2.85e-09;5!CL:0000594;4.20e-07;3|ontology_enrichment_celltype_v019_2=CL:0000188,1.79e-24,9;CL:0002537,2.85e-09,5;CL:0000594,4.13e-07,3|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!1.99e-16!115|ontology_enrichment_uberon_v019=UBERON:0001134;4.77e-40;16!UBERON:0002036;4.77e-40;16!UBERON:0002385;3.61e-19;31!UBERON:0001015;3.61e-19;31!UBERON:0000383;3.61e-19;31!UBERON:0000974;1.04e-12;6!UBERON:0005090;7.40e-11;2!UBERON:0001630;7.40e-11;2!UBERON:0000341;1.14e-10;2!UBERON:0005631;9.44e-08;10!UBERON:0000158;9.44e-08;10!UBERON:0001723;1.38e-07;3!UBERON:0001033;1.38e-07;3!UBERON:0000305;9.88e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0005090,7.40e-11,2;UBERON:0001630,7.40e-11,2;UBERON:0000341,1.14e-10,2;UBERON:0001134,1.83e-08,62;UBERON:0002036,1.83e-08,62;UBERON:0003082,1.83e-08,62;UBERON:0002385,4.01e-08,64;UBERON:0001015,4.01e-08,64;UBERON:0000383,4.01e-08,64;UBERON:0000974,1.29e-07,10;UBERON:0001723,1.38e-07,3;UBERON:0001033,1.38e-07,3;UBERON:0010056,1.38e-07,3;UBERON:0002329,4.33e-07,71;UBERON:0003059,4.33e-07,71;UBERON:0007282,4.33e-07,71;UBERON:0004290,4.33e-07,71;UBERON:0009618,4.33e-07,71;UBERON:0000166,5.42e-07,22;UBERON:0003077,5.86e-07,72;UBERON:0007285,5.86e-07,72;UBERON:0007524,7.85e-07,73;UBERON:0000305,9.89e-07,7|phase1_expression=0.363356758541113,0,0.281908808191942,0,0.446961094427288,0.872338524100369,0,0,0.522371256399677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0.576175924479999,0,0,0,0,0,0.161872944368132,0,0,0.122834317311768,0,0,0,0,0,0,0.750711119231785,0,0,0,0,0.113432183160021,0,0,0.211931901159562,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.2307840246988,0,0,0,0,0,0,0,0,0,0.648119116109707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0,0,0,0,0,0,0,0,0,0,2.17048642156577,0,0,0,0,0,0,0,0,0,0,0,0,0,2.60606352001643,0.410952645100767,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.391602314925481,49.7557964525741,0,0,0,0.303127571446259,0,0.604780586659361,0.248107807818777,0.306923946576125,0,0,0,0,1.48418066444991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,10.1504254206728,1.3864375540318,5.06562126596228,7.85668463161824,0.644521469209642,4.93056759308377,7.49994321261688,173.879565618078,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31857361344705,0.121360521749513,0,0,14.0859245995237,10.3937638291424,41.4666947833963,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0,0,0,0,2.07151151837561,0,0,0,0,0,0,0,0,0.341380344856499,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,2.92789862985067,0.230850775511391,0,0,0,0,2.87101043758728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,40.9314600122382,0,0,1.36965233252463,0,0.789168805698781,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0.293977192243133,0,2.44617335538842,0,0,0,0,1.45483524732629,0,4.51961481561065,0.137041924646751,0,0.126621591911757,0,0,0.213452994739353,0.599428828746391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0.687481272035051,0.717873024576814,0.199679000498991,0,0.446342914883745,0.940568614814168,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0.77380195455795,0.121499113316049,0.670869375198532,0,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0,0,0,0,0,0.638341257770182,0,0.5013797880454,0.306345576763462,0.327872630709804,0,0.886068179966986,0.122026264901963,0.3755727921195,0,0.110929051536852,0,0,0.624902039810533,0,0,0,0,0,0,0,0,0.189403005275089,0.50313580350515,2.66943366478961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34699795506368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0.0691572524642179,0,1.42769420259154,0,13.8024576316856,1.10057159113007,0,0,0,0,0.225630985047772,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,15.8787577084574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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7140 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11950 | |||
|TSSclassifier=S | |||
|UniProt=P45378 | |||
|association_with_transcript=0bp_to_ENST00000381558_5end | |||
|coexpression_cluster_id=C134 | |||
|description=CAGE_peak_2_at_TNNT3_5end | |||
|id=chr11:1942580..1942639,+ | |||
|ontology_enrichment_celltype=CL:0000188!6.51e-12!9 | |||
|ontology_enrichment_celltype_v019=CL:0000188;1.79e-24;9!CL:0002537;2.85e-09;5!CL:0000594;4.20e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000188,1.79e-24,9;CL:0002537,2.85e-09,5;CL:0000594,4.13e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.99e-16!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0001134;4.77e-40;16!UBERON:0002036;4.77e-40;16!UBERON:0002385;3.61e-19;31!UBERON:0001015;3.61e-19;31!UBERON:0000383;3.61e-19;31!UBERON:0000974;1.04e-12;6!UBERON:0005090;7.40e-11;2!UBERON:0001630;7.40e-11;2!UBERON:0000341;1.14e-10;2!UBERON:0005631;9.44e-08;10!UBERON:0000158;9.44e-08;10!UBERON:0001723;1.38e-07;3!UBERON:0001033;1.38e-07;3!UBERON:0000305;9.88e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005090,7.40e-11,2;UBERON:0001630,7.40e-11,2;UBERON:0000341,1.14e-10,2;UBERON:0001134,1.83e-08,62;UBERON:0002036,1.83e-08,62;UBERON:0003082,1.83e-08,62;UBERON:0002385,4.01e-08,64;UBERON:0001015,4.01e-08,64;UBERON:0000383,4.01e-08,64;UBERON:0000974,1.29e-07,10;UBERON:0001723,1.38e-07,3;UBERON:0001033,1.38e-07,3;UBERON:0010056,1.38e-07,3;UBERON:0002329,4.33e-07,71;UBERON:0003059,4.33e-07,71;UBERON:0007282,4.33e-07,71;UBERON:0004290,4.33e-07,71;UBERON:0009618,4.33e-07,71;UBERON:0000166,5.42e-07,22;UBERON:0003077,5.86e-07,72;UBERON:0007285,5.86e-07,72;UBERON:0007524,7.85e-07,73;UBERON:0000305,9.89e-07,7 | |||
|phase1_expression=0.363356758541113,0,0.281908808191942,0,0.446961094427288,0.872338524100369,0,0,0.522371256399677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0.576175924479999,0,0,0,0,0,0.161872944368132,0,0,0.122834317311768,0,0,0,0,0,0,0.750711119231785,0,0,0,0,0.113432183160021,0,0,0.211931901159562,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.2307840246988,0,0,0,0,0,0,0,0,0,0.648119116109707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0,0,0,0,0,0,0,0,0,0,2.17048642156577,0,0,0,0,0,0,0,0,0,0,0,0,0,2.60606352001643,0.410952645100767,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.391602314925481,49.7557964525741,0,0,0,0.303127571446259,0,0.604780586659361,0.248107807818777,0.306923946576125,0,0,0,0,1.48418066444991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,10.1504254206728,1.3864375540318,5.06562126596228,7.85668463161824,0.644521469209642,4.93056759308377,7.49994321261688,173.879565618078,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31857361344705,0.121360521749513,0,0,14.0859245995237,10.3937638291424,41.4666947833963,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0,0,0,0,2.07151151837561,0,0,0,0,0,0,0,0,0.341380344856499,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,2.92789862985067,0.230850775511391,0,0,0,0,2.87101043758728,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,40.9314600122382,0,0,1.36965233252463,0,0.789168805698781,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0.293977192243133,0,2.44617335538842,0,0,0,0,1.45483524732629,0,4.51961481561065,0.137041924646751,0,0.126621591911757,0,0,0.213452994739353,0.599428828746391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0.687481272035051,0.717873024576814,0.199679000498991,0,0.446342914883745,0.940568614814168,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0.77380195455795,0.121499113316049,0.670869375198532,0,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0,0,0,0,0,0.638341257770182,0,0.5013797880454,0.306345576763462,0.327872630709804,0,0.886068179966986,0.122026264901963,0.3755727921195,0,0.110929051536852,0,0,0.624902039810533,0,0,0,0,0,0,0,0,0.189403005275089,0.50313580350515,2.66943366478961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34699795506368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0.0691572524642179,0,1.42769420259154,0,13.8024576316856,1.10057159113007,0,0,0,0,0.225630985047772,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,15.8787577084574,0,0,0,0,0,0,0.0887023701626388,0,0,0,0.131545547125698,0,0,0.627944742804112,0,0.280272163313789,0,0,0,0,0,0,0.869291361512897,0,0,0,0,0.860454717640555,0,0,0,0,0,0,0,0,0,23.9548669759521,32.5441097734303,295.752679991241,17.485595750129,0,0,0,0,0,0,0,0.218559560503957,0,0.980593287015622,0,0,0,1.6906229103336,0,0,0,0,0.892769693028288,0,0,0,1.83491713361816,0,0.315543124386369,0.0679914901909147,0,0.5290268405154,0,0,0,0,0,0,0.101988829741982,0,0,0,0.378893491091197,0,0,0.103432995861895,11.727869004554,33.0909559734599,0.0645889098360061,0.31037357147929,0,0.0636471582781649,2.22328907854041,39.40673136935,71.868993227909,1.81850543139386,0.717222053926764,14.9697160445706,0.162806537221949,0,0,0,7.03922827210363,0.122241444182866,0,0,0.805095174364105,0 | |||
|short_description=p2@TNNT3 | |||
}} |
Revision as of 17:05, 10 September 2013
Short description: | p2@TNNT3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_TNNT3_5end |
Coexpression cluster: | C134_skeletal_diaphragm_tongue_throat_Skeletal_skin_penis |
Association with transcript: | 0bp_to_ENST00000381558_5end |
EntrezGene: | TNNT3 |
HGNC: | 11950 |
UniProt: | P45378 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cell of skeletal muscle | 1.79e-24 | 9 |
amnion mesenchymal stem cell | 2.85e-09 | 5 |
skeletal muscle satellite cell | 4.13e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
muscle structure | 7.40e-11 | 2 |
muscle organ | 7.40e-11 | 2 |
throat | 1.14e-10 | 2 |
skeletal muscle tissue | 1.83e-08 | 62 |
striated muscle tissue | 1.83e-08 | 62 |
myotome | 1.83e-08 | 62 |
muscle tissue | 4.01e-08 | 64 |
musculature | 4.01e-08 | 64 |
musculature of body | 4.01e-08 | 64 |
neck | 1.29e-07 | 10 |
tongue | 1.38e-07 | 3 |
gustatory system | 1.38e-07 | 3 |
future tongue | 1.38e-07 | 3 |
somite | 4.33e-07 | 71 |
presomitic mesoderm | 4.33e-07 | 71 |
presumptive segmental plate | 4.33e-07 | 71 |
dermomyotome | 4.33e-07 | 71 |
trunk paraxial mesoderm | 4.33e-07 | 71 |
oral opening | 5.42e-07 | 22 |
paraxial mesoderm | 5.86e-07 | 72 |
presumptive paraxial mesoderm | 5.86e-07 | 72 |
dense mesenchyme tissue | 7.85e-07 | 73 |
amnion | 9.89e-07 | 7 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.