FFCP PHASE1:Hg19::chr11:66112555..66112601,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=25855|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=17262|TSSclassifier=S|UniProt=Q9HCU9,G5E9I4|association_with_transcript=0bp_to_ENST00000359957,ENST00000425825,ENST00000529544,ENST00000530238,NM_001024957,NM_015399,uc001oho.1,uc001ohp.1_5end|description=CAGE_peak_1_at_BRMS1_5end|id=chr11:66112555..66112601,-|ontology_enrichment_celltype=CL:0000548!2.66e-19!679;CL:0000004!2.66e-19!679;CL:0000255!2.66e-19!679;CL:0000012!9.76e-19!682;CL:0000003!1.00e-18!722;CL:0000063!2.44e-14!578;CL:0000066!5.58e-12!254;CL:0000144!1.59e-11!625;CL:0002371!3.44e-10!591;CL:0000076!9.17e-10!62;CL:0000988!2.28e-09!182;CL:0000037!9.49e-09!172;CL:0000566!9.49e-09!172;CL:0002032!1.05e-08!165;CL:0000837!1.05e-08!165;CL:0000220!1.83e-08!246;CL:0002321!4.46e-08!248;CL:0000115!1.12e-07!35;CL:0000738!1.26e-07!140;CL:0000213!1.66e-07!57;CL:0000215!1.66e-07!57;CL:0002078!1.74e-07!44;CL:0000542!4.93e-07!53;CL:0000051!4.93e-07!53;CL:0000838!5.41e-07!52|ontology_enrichment_celltype_v019=CL:0000115;6.76e-07;36|ontology_enrichment_celltype_v019_2=CL:0000066,7.96e-12,253;CL:0000076,1.49e-09,63;CL:0000988,1.74e-08,177;CL:0002321,2.12e-08,250;CL:0000037,4.28e-08,168;CL:0002032,4.80e-08,161;CL:0000837,4.80e-08,161;CL:0000115,5.60e-08,36;CL:0000213,8.89e-08,58;CL:0000215,8.89e-08,58;CL:0002078,9.02e-08,45;CL:0000542,4.93e-07,53;CL:0000051,4.93e-07,53;CL:0000838,5.41e-07,52;CL:0000738,5.48e-07,136;CL:0000222,6.48e-07,121|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:14566!7.73e-08!239;DOID:162!9.51e-08!235|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:14566,7.73e-08,239;DOID:162,9.51e-08,235|ontology_enrichment_uberon=UBERON:0000487!4.68e-07!22|ontology_enrichment_uberon_v019=UBERON:0000487;5.62e-07;22|ontology_enrichment_uberon_v019_2=UBERON:0000487,4.68e-07,22|phase1_expression=16.8960892721618,17.5562429590606,9.3029906703341,13.009528785907,14.3027550216732,12.2127393374052,27.8629865985142,28.4273943042074,24.5514490507848,37.8430262212324,124.208607899092,29.9264679818336,31.1245034309575,18.8124856499271,16.2384714106679,14.7911532219391,19.8889194247912,18.9880623500717,26.3483711346874,22.7773957442058,43.0441458525374,45.4509346143227,18.6053391635187,26.9642617393582,23.0998456854437,28.3493735324899,34.5643481584272,36.6005133108608,48.3838060524152,36.079963421138,30.1891440466348,45.0516399994674,55.1206831364198,32.1685988845105,16.6554481247648,21.1832156406258,19.6712294354348,37.1176923716358,38.9056228092075,38.4109241167058,26.8698569087909,22.0247692892906,21.6363476812717,28.3526565620151,21.1610528465733,22.0751495680913,22.3131875429457,18.913722849004,16.4144376574405,25.3169305243492,22.5421421745609,28.6143498165188,24.4769433322999,18.0735711403471,16.251178391321,21.8361113869421,20.4679612543384,25.6184772267396,25.4049630667849,14.7627352455003,19.8194508997703,27.3776579154974,22.9383206264877,23.4423612792982,17.1223450790865,23.2627942123367,10.5879782329248,24.8736178604176,21.3807996552283,22.5876398493321,18.7673845816344,15.4676607114777,15.5066569846033,24.9281237848091,27.0007460955605,23.2721096514297,24.3753129587894,24.629010426007,23.7873868311679,17.9558028556987,21.2840844603026,26.6689664496366,35.1992488922645,29.4914850081551,31.1328238852244,30.297845802222,27.6273231054849,27.0133646778607,26.4417949113945,27.6675588815256,26.7530095481441,34.6469941728854,37.0805031281472,15.8605594294831,17.9362740154092,19.2270381885806,33.8340804595793,41.2661300886623,34.9522548299166,27.2513987486805,29.0070817303895,27.4599727326145,40.9136129656614,26.0700469111306,29.1659848400089,28.5778724012871,33.3088752430969,39.452126475508,33.4252523228887,28.7766333056433,27.358651760799,23.4740499445393,23.8741366690917,18.1927763101005,36.5874333317419,19.8291349720741,27.9750960329403,27.4901956386104,24.5429101258918,31.5379760180856,25.3922547004003,19.0090408889675,18.2195894084105,16.51027283892,24.9861453104692,29.8339337575461,25.4549679045524,31.652258686283,37.7090676054745,38.6681158367073,43.8852359365131,20.7917266508127,13.0419813080401,14.8190052477672,24.0642197105227,21.0027452493194,18.2915767821753,18.4921250715002,20.2304508731105,21.5077515538687,20.8168442092709,20.1707776266477,37.5224146941318,32.2582465222454,22.0692227685185,21.9403468997077,25.660886380141,28.8573655409464,28.5997455390064,14.1153850505235,46.7091657311757,43.0117297553062,40.6154386880885,45.2246353539208,35.657452077842,44.2940047523509,49.9497970022977,20.414923974377,16.3652480835887,15.3971481871748,18.9329779041299,42.5752379202367,33.1924398265511,20.9567955797145,52.6592266123144,17.5027467436796,34.8020527570563,35.1347819107965,55.193989487718,53.1588769358152,39.9379801768288,52.7121669744253,34.9002237733493,23.9851728678394,15.4061305025549,17.0951190747183,9.53346101855175,12.0471380714502,20.9254345497031,35.8833664091077,42.699598291882,43.9068236182545,9.95875313279252,23.843788956334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2912082159,6.95637121569465,8.59185908475232,11.7811474005675,7.80014465385054,16.4092442705466,33.4437237782881,11.4128571029538,45.902394777861,80.7458542682242,16.6067569122269,17.4867535553788,7.28358725083958,9.1064876540519,20.8450569882201,22.0096916231538,108.208933955011,7.00088249661367,7.43232341260195,25.1752881082852,31.5897181373476,13.4223188774379,9.58405098487612,59.9782429491508,14.6105395281519,20.7290487569877,11.9437921971763,15.0815508212745,15.6433475615399,22.6670779467844,46.0724421601835,44.0941250601639,18.0278062821842,13.9989151217039,34.5629830907046,21.5113679410139,31.8313081965221,25.7344482372656,25.8266100616467,18.328549483524,39.3962109793686,37.2660186201199,19.910266860007,20.1207978911248,25.6027642462766,18.1280074412611,14.5781185735871,16.2374020387348,12.6284858195376,14.7381861981127,19.2982251906527,31.2759838745005,20.5561869310907,8.35547927265261,23.5502035964011,14.8174383567254,17.2662052798126,22.5752302253531,14.2186026617265,37.2368944420569,14.330518099391,11.5848096127564,21.5554421067534,21.5807435653527,22.462156397185,18.0482086326016,21.3874073679348,25.8903210978204,62.8152871653931,54.2431638818777,34.3258102475863,25.2301105872497,14.7639770645995,17.5126434034435,9.31483415615531,16.5813262329343,12.1676173318542,15.6237907630036,13.4030932303111,9.08515780459957,21.7006250716336,22.617973396485,20.1450616608185,27.2310175411091,25.1184360949627,27.7522596595232,16.5466975932968,19.7782402349605,37.2470140917088,14.0958804707992,16.6527123337651,19.4042923529893,20.4735411058817,20.6038622376859,16.0152762883313,32.4061082857973,19.9852076993438,19.8074845179055,20.0299408065204,11.2936989358143,21.2158966995951,18.2174401697398,12.9737539052945,20.9206400330204,20.0647410250105,77.228912914776,60.1828854114132,28.1569130884145,10.2682813113608,10.5793006362092,17.9754329030088,21.3350221206488,30.1334382765039|short_description=p1@BRMS1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=25855 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17262 | |||
|TSSclassifier=S | |||
|UniProt=Q9HCU9,G5E9I4 | |||
|association_with_transcript=0bp_to_ENST00000359957,ENST00000425825,ENST00000529544,ENST00000530238,NM_001024957,NM_015399,uc001oho.1,uc001ohp.1_5end | |||
|description=CAGE_peak_1_at_BRMS1_5end | |||
|id=chr11:66112555..66112601,- | |||
|ontology_enrichment_celltype=CL:0000548!2.66e-19!679;CL:0000004!2.66e-19!679;CL:0000255!2.66e-19!679;CL:0000012!9.76e-19!682;CL:0000003!1.00e-18!722;CL:0000063!2.44e-14!578;CL:0000066!5.58e-12!254;CL:0000144!1.59e-11!625;CL:0002371!3.44e-10!591;CL:0000076!9.17e-10!62;CL:0000988!2.28e-09!182;CL:0000037!9.49e-09!172;CL:0000566!9.49e-09!172;CL:0002032!1.05e-08!165;CL:0000837!1.05e-08!165;CL:0000220!1.83e-08!246;CL:0002321!4.46e-08!248;CL:0000115!1.12e-07!35;CL:0000738!1.26e-07!140;CL:0000213!1.66e-07!57;CL:0000215!1.66e-07!57;CL:0002078!1.74e-07!44;CL:0000542!4.93e-07!53;CL:0000051!4.93e-07!53;CL:0000838!5.41e-07!52 | |||
|ontology_enrichment_celltype_v019=CL:0000115;6.76e-07;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,7.96e-12,253;CL:0000076,1.49e-09,63;CL:0000988,1.74e-08,177;CL:0002321,2.12e-08,250;CL:0000037,4.28e-08,168;CL:0002032,4.80e-08,161;CL:0000837,4.80e-08,161;CL:0000115,5.60e-08,36;CL:0000213,8.89e-08,58;CL:0000215,8.89e-08,58;CL:0002078,9.02e-08,45;CL:0000542,4.93e-07,53;CL:0000051,4.93e-07,53;CL:0000838,5.41e-07,52;CL:0000738,5.48e-07,136;CL:0000222,6.48e-07,121 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!7.73e-08!239;DOID:162!9.51e-08!235 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,7.73e-08,239;DOID:162,9.51e-08,235 | |||
|ontology_enrichment_uberon=UBERON:0000487!4.68e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000487;5.62e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000487,4.68e-07,22 | |||
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| |||
|short_description=p1@BRMS1 | |||
}} |
Revision as of 19:08, 10 September 2013
Short description: | p1@BRMS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_BRMS1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000359957, ENST00000425825, ENST00000529544, ENST00000530238, NM_001024957, NM_015399, uc001oho.1, uc001ohp.1_5end |
EntrezGene: | BRMS1 |
HGNC: | 17262 |
UniProt: | Q9HCU9G5E9I4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 7.96e-12 | 253 |
squamous epithelial cell | 1.49e-09 | 63 |
hematopoietic cell | 1.74e-08 | 177 |
embryonic cell | 2.12e-08 | 250 |
hematopoietic stem cell | 4.28e-08 | 168 |
hematopoietic oligopotent progenitor cell | 4.80e-08 | 161 |
hematopoietic multipotent progenitor cell | 4.80e-08 | 161 |
endothelial cell | 5.60e-08 | 36 |
lining cell | 8.89e-08 | 58 |
barrier cell | 8.89e-08 | 58 |
meso-epithelial cell | 9.02e-08 | 45 |
lymphocyte | 4.93e-07 | 53 |
common lymphoid progenitor | 4.93e-07 | 53 |
lymphoid lineage restricted progenitor cell | 5.41e-07 | 52 |
leukocyte | 5.48e-07 | 136 |
mesodermal cell | 6.48e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
simple squamous epithelium | 4.68e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 7.73e-08 | 239 |
cancer | 9.51e-08 | 235 |
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