FFCP PHASE1:Hg19::chr11:85429982..85430028,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=54843|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=15585|TSSclassifier=S|UniProt=|association_with_transcript=70bp_to_ENST00000530894_5end|coexpression_cluster_id=C3208|description=CAGE_peak_4_at_SYTL2_5end|id=chr11:85429982..85430028,-|ontology_enrichment_celltype=CL:0000055!5.29e-20!180;CL:0002620!1.32e-11!23;CL:0000680!1.44e-09!57;CL:0000056!1.44e-09!57;CL:0000355!1.44e-09!57;CL:0000057!9.63e-09!75;CL:0000187!1.26e-08!54;CL:0000393!2.58e-08!60;CL:0000211!2.58e-08!60;CL:0000188!7.80e-08!9;CL:0000183!5.98e-07!59|ontology_enrichment_celltype_v019=CL:0002620;3.25e-11;23!CL:0000188;7.32e-11;9|ontology_enrichment_celltype_v019_2=CL:0002620,1.76e-11,23;CL:0000188,3.96e-11,9;CL:0000057,2.55e-07,76|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:17;2.38e-07;5!DOID:450;2.38e-07;5!DOID:66;2.38e-07;5!DOID:423;2.38e-07;5!DOID:0080000;2.38e-07;5!DOID:11722;2.38e-07;5|ontology_enrichment_disease_v019_2=DOID:17,2.51e-07,5;DOID:450,2.51e-07,5;DOID:66,2.51e-07,5;DOID:423,2.51e-07,5;DOID:0080000,2.51e-07,5;DOID:11722,2.51e-07,5|ontology_enrichment_uberon=UBERON:0001017!8.65e-23!82;UBERON:0005743!2.14e-22!86;UBERON:0001049!6.99e-22!57;UBERON:0005068!6.99e-22!57;UBERON:0006241!6.99e-22!57;UBERON:0007135!6.99e-22!57;UBERON:0000475!1.46e-21!365;UBERON:0000073!6.59e-21!94;UBERON:0001016!6.59e-21!94;UBERON:0000955!1.61e-19!69;UBERON:0006238!1.61e-19!69;UBERON:0002616!1.13e-18!59;UBERON:0003075!1.98e-18!86;UBERON:0007284!1.98e-18!86;UBERON:0007023!1.99e-17!115;UBERON:0002346!1.35e-16!90;UBERON:0002020!2.68e-16!34;UBERON:0003528!2.68e-16!34;UBERON:0001893!6.58e-16!34;UBERON:0001869!1.05e-15!32;UBERON:0000033!2.48e-15!123;UBERON:0002791!3.43e-15!33;UBERON:0000914!6.13e-15!83;UBERON:0002329!6.13e-15!83;UBERON:0003077!6.13e-15!83;UBERON:0003059!6.13e-15!83;UBERON:0007282!6.13e-15!83;UBERON:0009618!6.13e-15!83;UBERON:0007285!6.13e-15!83;UBERON:0000153!6.91e-15!129;UBERON:0007811!6.91e-15!129;UBERON:0002780!1.27e-14!41;UBERON:0001890!1.27e-14!41;UBERON:0006240!1.27e-14!41;UBERON:0004121!3.63e-14!169;UBERON:0003080!5.82e-14!42;UBERON:0000483!3.56e-13!309;UBERON:0000924!3.67e-13!173;UBERON:0006601!3.67e-13!173;UBERON:0000956!3.73e-13!25;UBERON:0000203!3.73e-13!25;UBERON:0000119!1.21e-12!312;UBERON:0004290!2.29e-12!70;UBERON:0000481!4.60e-12!347;UBERON:0002619!7.47e-12!22;UBERON:0003056!3.41e-11!61;UBERON:0001950!7.15e-11!20;UBERON:0002385!7.26e-11!63;UBERON:0001015!7.26e-11!63;UBERON:0000383!7.26e-11!63;UBERON:0000486!2.10e-10!82;UBERON:0001134!2.20e-10!61;UBERON:0002036!2.20e-10!61;UBERON:0003082!2.20e-10!61;UBERON:0003076!1.48e-09!15;UBERON:0003057!1.48e-09!15;UBERON:0000467!7.18e-09!625;UBERON:0000480!9.45e-09!626;UBERON:0002097!1.53e-08!40;UBERON:0000025!3.34e-08!194;UBERON:0000468!3.49e-08!659;UBERON:0004733!7.99e-08!12;UBERON:0002028!7.99e-08!12;UBERON:0007277!7.99e-08!12;UBERON:0002199!8.26e-08!45;UBERON:0002416!8.26e-08!45;UBERON:0000477!6.32e-07!286;UBERON:0004732!6.67e-07!13|ontology_enrichment_uberon_v019=UBERON:0000956;1.11e-17;25!UBERON:0000203;1.11e-17;25!UBERON:0001869;1.41e-15;32!UBERON:0002619;1.95e-15;22!UBERON:0001950;2.11e-15;20!UBERON:0003528;3.90e-15;34!UBERON:0002020;3.90e-15;34!UBERON:0001893;1.37e-14;34!UBERON:0002791;7.45e-14;32!UBERON:0001134;1.28e-10;16!UBERON:0002036;1.28e-10;16!UBERON:0000073;2.07e-10;53!UBERON:0002616;2.07e-10;53!UBERON:0004733;1.30e-09;12!UBERON:0002028;1.30e-09;12!UBERON:0000200;7.94e-09;6!UBERON:0001017;8.20e-09;75!UBERON:0004732;1.15e-08;13!UBERON:0002780;4.24e-08;41!UBERON:0001890;4.24e-08;41!UBERON:0001016;4.61e-08;83!UBERON:0002385;5.02e-08;31!UBERON:0001015;5.02e-08;31!UBERON:0000383;5.02e-08;31!UBERON:0000955;1.26e-07;68!UBERON:0002680;1.33e-07;9!UBERON:0001895;1.33e-07;9!UBERON:0002097;8.21e-07;41|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.76e-21,81;UBERON:0001049,2.35e-21,56;UBERON:0005068,2.35e-21,56;UBERON:0006241,2.35e-21,56;UBERON:0007135,2.35e-21,56;UBERON:0001016,2.40e-20,89;UBERON:0000073,5.30e-19,53;UBERON:0002616,5.30e-19,53;UBERON:0000956,1.28e-17,25;UBERON:0000203,1.28e-17,25;UBERON:0001869,6.53e-17,32;UBERON:0003528,7.41e-17,34;UBERON:0002020,7.41e-17,34;UBERON:0000955,7.95e-17,68;UBERON:0006238,7.95e-17,68;UBERON:0001950,1.22e-15,20;UBERON:0002619,1.23e-15,22;UBERON:0001893,1.73e-15,34;UBERON:0003075,1.91e-15,82;UBERON:0007284,1.91e-15,82;UBERON:0002791,3.46e-15,32;UBERON:0002346,3.84e-14,86;UBERON:0010371,3.80e-13,104;UBERON:0003076,2.35e-12,15;UBERON:0003057,2.35e-12,15;UBERON:0010314,3.54e-12,132;UBERON:0002780,1.25e-11,41;UBERON:0001890,1.25e-11,41;UBERON:0003080,1.25e-11,41;UBERON:0006240,1.25e-11,41;UBERON:0004121,2.14e-11,171;UBERON:0000924,2.14e-11,171;UBERON:0006601,2.14e-11,171;UBERON:0007023,6.72e-10,114;UBERON:0004733,9.66e-10,12;UBERON:0002028,9.66e-10,12;UBERON:0007277,9.66e-10,12;UBERON:0000200,6.85e-09,6;UBERON:0004732,8.80e-09,13;UBERON:0003056,1.46e-08,61;UBERON:0002097,2.48e-08,41;UBERON:0002680,1.18e-07,9;UBERON:00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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=54843 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15585 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=70bp_to_ENST00000530894_5end | |||
|coexpression_cluster_id=C3208 | |||
|description=CAGE_peak_4_at_SYTL2_5end | |||
|id=chr11:85429982..85430028,- | |||
|ontology_enrichment_celltype=CL:0000055!5.29e-20!180;CL:0002620!1.32e-11!23;CL:0000680!1.44e-09!57;CL:0000056!1.44e-09!57;CL:0000355!1.44e-09!57;CL:0000057!9.63e-09!75;CL:0000187!1.26e-08!54;CL:0000393!2.58e-08!60;CL:0000211!2.58e-08!60;CL:0000188!7.80e-08!9;CL:0000183!5.98e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002620;3.25e-11;23!CL:0000188;7.32e-11;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,1.76e-11,23;CL:0000188,3.96e-11,9;CL:0000057,2.55e-07,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;2.38e-07;5!DOID:450;2.38e-07;5!DOID:66;2.38e-07;5!DOID:423;2.38e-07;5!DOID:0080000;2.38e-07;5!DOID:11722;2.38e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,2.51e-07,5;DOID:450,2.51e-07,5;DOID:66,2.51e-07,5;DOID:423,2.51e-07,5;DOID:0080000,2.51e-07,5;DOID:11722,2.51e-07,5 | |||
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| |||
|short_description=p4@SYTL2 | |||
}} |
Revision as of 20:01, 10 September 2013
Short description: | p4@SYTL2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_SYTL2_5end |
Coexpression cluster: | C3208_epithelioid_anaplastic_Pancreatic_mucinous_mesenchymal_endometrial_occipital |
Association with transcript: | 70bp_to_ENST00000530894_5end |
EntrezGene: | SYTL2 |
HGNC: | 15585 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 1.76e-11 | 23 |
cell of skeletal muscle | 3.96e-11 | 9 |
fibroblast | 2.55e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 2.51e-07 | 5 |
myotonic disease | 2.51e-07 | 5 |
muscle tissue disease | 2.51e-07 | 5 |
myopathy | 2.51e-07 | 5 |
muscular disease | 2.51e-07 | 5 |
myotonic dystrophy | 2.51e-07 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.