FFCP PHASE1:Hg19::chr19:6772710..6772744,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7409|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=12657|TSSclassifier=S|UniProt=P15498|association_with_transcript=0bp_to_ENST00000304076,NM_005428,uc002mfu.1,uc010dva.1,uc010xjh.1_5end|coexpression_cluster_id=C2|description=CAGE_peak_1_at_VAV1_5end|id=chr19:6772710..6772744,+|ontology_enrichment_celltype=CL:0000037!4.06e-88!172;CL:0000566!4.06e-88!172;CL:0002032!3.15e-83!165;CL:0000837!3.15e-83!165;CL:0000988!1.58e-82!182;CL:0000738!1.93e-72!140;CL:0002031!5.54e-61!124;CL:0002087!4.30e-59!119;CL:0000763!3.59e-55!112;CL:0000049!3.59e-55!112;CL:0000766!4.38e-41!76;CL:0000557!5.09e-37!71;CL:0000839!4.06e-35!70;CL:0002009!2.27e-33!65;CL:0002194!1.97e-32!63;CL:0000576!1.97e-32!63;CL:0000040!1.97e-32!63;CL:0000559!1.97e-32!63;CL:0002057!7.62e-30!42;CL:0000860!4.90e-27!45;CL:0000542!5.45e-23!53;CL:0000051!5.45e-23!53;CL:0000838!1.06e-22!52;CL:0000134!9.86e-12!358;CL:0000084!2.00e-11!25;CL:0000827!2.00e-11!25;CL:0000945!2.77e-11!24;CL:0000826!2.77e-11!24;CL:0002320!1.60e-10!365;CL:0000791!6.63e-09!18;CL:0000789!6.63e-09!18;CL:0002420!6.63e-09!18;CL:0002419!6.63e-09!18;CL:0000790!6.63e-09!18;CL:0002393!3.54e-08!9;CL:0002397!3.54e-08!9;CL:0000236!4.16e-08!14;CL:0000219!6.82e-08!390;CL:0000094!6.36e-07!8|ontology_enrichment_celltype_v019=CL:0000473;1.40e-22;39!CL:0000234;1.40e-22;39!CL:0000860;1.91e-22;33!CL:0002057;1.91e-22;33!CL:0000576;4.28e-22;48!CL:0000766;3.00e-20;69!CL:0000763;2.52e-18;100!CL:0002087;5.81e-18;104!CL:0000738;4.08e-17;136!CL:0000988;2.32e-15;177!CL:0000542;1.27e-14;53!CL:0000084;4.15e-12;25!CL:0000945;5.55e-12;24!CL:0000791;2.07e-09;18!CL:0000789;2.07e-09;18!CL:0002419;2.07e-09;18!CL:0000236;2.77e-08;13!CL:0000094;2.60e-07;8!CL:0000219;9.89e-07;193|ontology_enrichment_celltype_v019_2=CL:0000037,2.35e-95,168;CL:0000988,1.22e-90,177;CL:0002032,4.07e-90,161;CL:0000837,4.07e-90,161;CL:0000738,2.45e-81,136;CL:0002031,4.87e-68,120;CL:0002087,6.00e-67,115;CL:0000763,3.57e-60,108;CL:0000049,3.57e-60,108;CL:0000766,5.52e-48,72;CL:0000557,1.60e-43,67;CL:0000839,1.80e-40,66;CL:0002009,1.41e-39,61;CL:0002194,1.39e-38,59;CL:0000576,1.39e-38,59;CL:0000040,1.39e-38,59;CL:0000559,1.39e-38,59;CL:0000473,1.54e-36,48;CL:0000234,1.54e-36,48;CL:0000860,6.98e-32,42;CL:0002057,6.98e-32,42;CL:0000542,1.57e-24,53;CL:0000051,1.57e-24,53;CL:0000838,3.19e-24,52;CL:0000134,7.60e-14,354;CL:0002320,1.29e-12,361;CL:0000084,3.93e-12,25;CL:0000827,3.93e-12,25;CL:0000945,5.56e-12,24;CL:0000826,5.56e-12,24;CL:0000791,1.97e-09,18;CL:0000789,1.97e-09,18;CL:0002420,1.97e-09,18;CL:0002419,1.97e-09,18;CL:0000790,1.97e-09,18;CL:0000219,2.30e-09,386;CL:0002393,1.18e-08,9;CL:0002397,1.18e-08,9;CL:0000236,1.41e-08,14;CL:0000094,2.61e-07,8|ontology_enrichment_development_v019=CL:0002057;7.81e-23;42!CL:0000049;8.29e-17;108!CL:0000051;1.27e-14;53!CL:0000790;2.07e-09;18|ontology_enrichment_disease=DOID:2531!1.55e-17!51;DOID:0060083!1.55e-17!51;DOID:1240!1.32e-15!39;DOID:8692!1.01e-12!31|ontology_enrichment_disease_v019=DOID:1240;5.09e-12;39!DOID:8692;7.41e-12;31!DOID:2531;9.05e-11;51!DOID:0060083;9.05e-11;51|ontology_enrichment_disease_v019_2=DOID:2531,1.47e-17,51;DOID:0060083,1.47e-17,51;DOID:1240,2.66e-15,39;DOID:8692,3.22e-12,31|ontology_enrichment_uberon=UBERON:0002390!1.83e-44!102;UBERON:0003061!1.83e-44!102;UBERON:0002193!1.85e-39!112;UBERON:0002371!1.26e-31!80;UBERON:0001474!4.64e-27!86;UBERON:0002405!9.90e-23!115;UBERON:0007023!5.21e-21!115;UBERON:0004765!1.90e-19!101;UBERON:0001434!1.90e-19!101;UBERON:0000178!3.65e-10!15;UBERON:0000179!3.65e-10!15;UBERON:0000463!3.65e-10!15;UBERON:0002384!1.41e-09!375;UBERON:0003081!1.98e-08!216|ontology_enrichment_uberon_v019=UBERON:0000178;8.85e-11;15!UBERON:0000179;8.85e-11;15!UBERON:0000463;8.85e-11;15!UBERON:0002390;2.25e-07;32|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.86e-51,98;UBERON:0003061,1.86e-51,98;UBERON:0002193,2.41e-45,108;UBERON:0002371,1.90e-37,76;UBERON:0002405,2.48e-35,93;UBERON:0001474,2.32e-32,82;UBERON:0004765,9.85e-27,90;UBERON:0001434,1.01e-21,100;UBERON:0007023,5.68e-19,114;UBERON:0003081,3.38e-12,203;UBERON:0002384,1.09e-11,371;UBERON:0000178,8.81e-11,15;UBERON:0000179,8.81e-11,15;UBERON:0000463,8.81e-11,15|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,3.36162573225888,0,0,0,0,0,0,0,0,0,18.9505246254919,17.3232243739386,21.7241756425755,48.3838060524152,30.706351847777,34.8336277461171,0,0,0,21.6133489619042,11.6578770639686,34.9384522808468,58.723513304379,53.1442785795875,54.4697285496788,57.3223614054206,37.8955589242206,50.9999623915689,61.5034550037559,51.0132523979893,89.5135185783042,65.0801303335917,44.4061319063572,53.5792021648529,49.4830914794099,46.6212485882963,71.8905978861299,39.6457532847111,46.4748972180355,85.3186865544353,49.3194929601624,47.758576260123,80.0015604624501,63.0532818284059,61.61837319861,93.9825574924591,50.1373976283808,48.8685961172998,75.4417808442869,62.9754047824027,63.5471451654077,113.353649317195,42.7122730936464,54.2342235157009,62.984764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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7409 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12657 | |||
|TSSclassifier=S | |||
|UniProt=P15498 | |||
|association_with_transcript=0bp_to_ENST00000304076,NM_005428,uc002mfu.1,uc010dva.1,uc010xjh.1_5end | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_1_at_VAV1_5end | |||
|id=chr19:6772710..6772744,+ | |||
|ontology_enrichment_celltype=CL:0000037!4.06e-88!172;CL:0000566!4.06e-88!172;CL:0002032!3.15e-83!165;CL:0000837!3.15e-83!165;CL:0000988!1.58e-82!182;CL:0000738!1.93e-72!140;CL:0002031!5.54e-61!124;CL:0002087!4.30e-59!119;CL:0000763!3.59e-55!112;CL:0000049!3.59e-55!112;CL:0000766!4.38e-41!76;CL:0000557!5.09e-37!71;CL:0000839!4.06e-35!70;CL:0002009!2.27e-33!65;CL:0002194!1.97e-32!63;CL:0000576!1.97e-32!63;CL:0000040!1.97e-32!63;CL:0000559!1.97e-32!63;CL:0002057!7.62e-30!42;CL:0000860!4.90e-27!45;CL:0000542!5.45e-23!53;CL:0000051!5.45e-23!53;CL:0000838!1.06e-22!52;CL:0000134!9.86e-12!358;CL:0000084!2.00e-11!25;CL:0000827!2.00e-11!25;CL:0000945!2.77e-11!24;CL:0000826!2.77e-11!24;CL:0002320!1.60e-10!365;CL:0000791!6.63e-09!18;CL:0000789!6.63e-09!18;CL:0002420!6.63e-09!18;CL:0002419!6.63e-09!18;CL:0000790!6.63e-09!18;CL:0002393!3.54e-08!9;CL:0002397!3.54e-08!9;CL:0000236!4.16e-08!14;CL:0000219!6.82e-08!390;CL:0000094!6.36e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.40e-22;39!CL:0000234;1.40e-22;39!CL:0000860;1.91e-22;33!CL:0002057;1.91e-22;33!CL:0000576;4.28e-22;48!CL:0000766;3.00e-20;69!CL:0000763;2.52e-18;100!CL:0002087;5.81e-18;104!CL:0000738;4.08e-17;136!CL:0000988;2.32e-15;177!CL:0000542;1.27e-14;53!CL:0000084;4.15e-12;25!CL:0000945;5.55e-12;24!CL:0000791;2.07e-09;18!CL:0000789;2.07e-09;18!CL:0002419;2.07e-09;18!CL:0000236;2.77e-08;13!CL:0000094;2.60e-07;8!CL:0000219;9.89e-07;193 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,2.35e-95,168;CL:0000988,1.22e-90,177;CL:0002032,4.07e-90,161;CL:0000837,4.07e-90,161;CL:0000738,2.45e-81,136;CL:0002031,4.87e-68,120;CL:0002087,6.00e-67,115;CL:0000763,3.57e-60,108;CL:0000049,3.57e-60,108;CL:0000766,5.52e-48,72;CL:0000557,1.60e-43,67;CL:0000839,1.80e-40,66;CL:0002009,1.41e-39,61;CL:0002194,1.39e-38,59;CL:0000576,1.39e-38,59;CL:0000040,1.39e-38,59;CL:0000559,1.39e-38,59;CL:0000473,1.54e-36,48;CL:0000234,1.54e-36,48;CL:0000860,6.98e-32,42;CL:0002057,6.98e-32,42;CL:0000542,1.57e-24,53;CL:0000051,1.57e-24,53;CL:0000838,3.19e-24,52;CL:0000134,7.60e-14,354;CL:0002320,1.29e-12,361;CL:0000084,3.93e-12,25;CL:0000827,3.93e-12,25;CL:0000945,5.56e-12,24;CL:0000826,5.56e-12,24;CL:0000791,1.97e-09,18;CL:0000789,1.97e-09,18;CL:0002420,1.97e-09,18;CL:0002419,1.97e-09,18;CL:0000790,1.97e-09,18;CL:0000219,2.30e-09,386;CL:0002393,1.18e-08,9;CL:0002397,1.18e-08,9;CL:0000236,1.41e-08,14;CL:0000094,2.61e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;7.81e-23;42!CL:0000049;8.29e-17;108!CL:0000051;1.27e-14;53!CL:0000790;2.07e-09;18 | |||
|ontology_enrichment_disease=DOID:2531!1.55e-17!51;DOID:0060083!1.55e-17!51;DOID:1240!1.32e-15!39;DOID:8692!1.01e-12!31 | |||
|ontology_enrichment_disease_v019=DOID:1240;5.09e-12;39!DOID:8692;7.41e-12;31!DOID:2531;9.05e-11;51!DOID:0060083;9.05e-11;51 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,1.47e-17,51;DOID:0060083,1.47e-17,51;DOID:1240,2.66e-15,39;DOID:8692,3.22e-12,31 | |||
|ontology_enrichment_uberon=UBERON:0002390!1.83e-44!102;UBERON:0003061!1.83e-44!102;UBERON:0002193!1.85e-39!112;UBERON:0002371!1.26e-31!80;UBERON:0001474!4.64e-27!86;UBERON:0002405!9.90e-23!115;UBERON:0007023!5.21e-21!115;UBERON:0004765!1.90e-19!101;UBERON:0001434!1.90e-19!101;UBERON:0000178!3.65e-10!15;UBERON:0000179!3.65e-10!15;UBERON:0000463!3.65e-10!15;UBERON:0002384!1.41e-09!375;UBERON:0003081!1.98e-08!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;8.85e-11;15!UBERON:0000179;8.85e-11;15!UBERON:0000463;8.85e-11;15!UBERON:0002390;2.25e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.86e-51,98;UBERON:0003061,1.86e-51,98;UBERON:0002193,2.41e-45,108;UBERON:0002371,1.90e-37,76;UBERON:0002405,2.48e-35,93;UBERON:0001474,2.32e-32,82;UBERON:0004765,9.85e-27,90;UBERON:0001434,1.01e-21,100;UBERON:0007023,5.68e-19,114;UBERON:0003081,3.38e-12,203;UBERON:0002384,1.09e-11,371;UBERON:0000178,8.81e-11,15;UBERON:0000179,8.81e-11,15;UBERON:0000463,8.81e-11,15 | |||
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| |||
|short_description=p1@VAV1 | |||
}} |
Revision as of 22:51, 11 September 2013
Short description: | p1@VAV1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_VAV1_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 0bp_to_ENST00000304076, NM_005428, uc002mfu.1, uc010dva.1, uc010xjh.1_5end |
EntrezGene: | VAV1 |
HGNC: | 12657 |
UniProt: | P15498 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.86e-51 | 98 |
blood island | 1.86e-51 | 98 |
hemolymphoid system | 2.41e-45 | 108 |
bone marrow | 1.90e-37 | 76 |
immune system | 2.48e-35 | 93 |
bone element | 2.32e-32 | 82 |
skeletal element | 9.85e-27 | 90 |
skeletal system | 1.01e-21 | 100 |
adult organism | 5.68e-19 | 114 |
lateral plate mesoderm | 3.38e-12 | 203 |
connective tissue | 1.09e-11 | 371 |
blood | 8.81e-11 | 15 |
haemolymphatic fluid | 8.81e-11 | 15 |
organism substance | 8.81e-11 | 15 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 1.47e-17 | 51 |
immune system cancer | 1.47e-17 | 51 |
leukemia | 2.66e-15 | 39 |
myeloid leukemia | 3.22e-12 | 31 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.