FFCP PHASE1:Hg19::chr2:21235116..21235125,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=338|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=603|TSSclassifier=N|UniProt=P04114|association_with_transcript=-387bp_to_M17367_5end|coexpression_cluster_id=C5|description=CAGE_peak_54_at_APOB_5end|id=chr2:21235116..21235125,-|ontology_enrichment_celltype=CL:0000181!1.59e-33!12;CL:0000417!1.59e-33!12;CL:0000668!1.59e-33!12;CL:0000414!1.59e-33!12;CL:0000412!1.59e-33!12;CL:0000182!1.59e-33!12;CL:0000223!2.83e-11!59|ontology_enrichment_celltype_v019=CL:0000182;1.10e-65;12|ontology_enrichment_celltype_v019_2=CL:0000182,1.16e-65,12;CL:0000223,1.01e-13,58|ontology_enrichment_development_v019=UBERON:0004161;2.73e-32;11!UBERON:0009497;2.04e-27;13!UBERON:0001041;3.70e-12;30!UBERON:0003104;1.13e-11;31!CL:0000223;3.54e-10;58|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002107!1.55e-28!19;UBERON:0006925!1.55e-28!19;UBERON:0008836!1.55e-28!19;UBERON:0008835!1.43e-24!22;UBERON:0003894!1.43e-24!22;UBERON:0009854!1.76e-23!23;UBERON:0007499!1.48e-21!25;UBERON:0009497!1.48e-21!25;UBERON:0000015!1.48e-21!25;UBERON:0002423!1.48e-21!25;UBERON:0006235!1.48e-21!25;UBERON:0004161!1.48e-21!25;UBERON:0005057!1.05e-20!26;UBERON:0009856!1.05e-20!26;UBERON:0003929!2.39e-19!54;UBERON:0002365!2.85e-17!31;UBERON:0002330!2.85e-17!31;UBERON:0002368!3.15e-15!35;UBERON:0004921!7.97e-15!129;UBERON:0004185!7.97e-15!129;UBERON:0002530!2.92e-14!59;UBERON:0005911!2.70e-12!82;UBERON:0001007!5.07e-12!155;UBERON:0001555!5.07e-12!155;UBERON:0007026!5.07e-12!155;UBERON:0000949!1.06e-11!45;UBERON:0004119!7.28e-11!169;UBERON:0000925!7.28e-11!169;UBERON:0006595!7.28e-11!169;UBERON:0000160!8.95e-10!27;UBERON:0005172!1.88e-09!55;UBERON:0005173!1.88e-09!55;UBERON:0002417!1.87e-08!61;UBERON:0000916!1.87e-08!61;UBERON:0005409!1.41e-07!35;UBERON:0000490!9.48e-07!138|ontology_enrichment_uberon_v019=UBERON:0002107;1.82e-56;19!UBERON:0006925;1.82e-56;19!UBERON:0002423;5.80e-43;25!UBERON:0002365;5.86e-34;31!UBERON:0002330;5.86e-34;31!UBERON:0002368;1.23e-28;33!UBERON:0000949;4.51e-23;43!UBERON:0002108;2.30e-18;4!UBERON:0005172;3.10e-13;52!UBERON:0005173;3.10e-13;52!UBERON:0002530;5.19e-12;57!UBERON:0001007;9.26e-12;81!UBERON:0002417;3.65e-11;58!UBERON:0000916;3.65e-11;58|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.97e-56,19;UBERON:0006925,1.97e-56,19;UBERON:0008836,1.97e-56,19;UBERON:0008835,9.14e-49,22;UBERON:0003894,9.14e-49,22;UBERON:0009854,1.18e-46,23;UBERON:0007499,6.18e-43,25;UBERON:0009497,6.18e-43,25;UBERON:0000015,6.18e-43,25;UBERON:0002423,6.18e-43,25;UBERON:0006235,6.18e-43,25;UBERON:0004161,6.18e-43,25;UBERON:0009856,2.73e-41,26;UBERON:0002365,1.18e-34,31;UBERON:0002330,1.18e-34,31;UBERON:0002368,1.05e-30,35;UBERON:0000949,6.78e-24,45;UBERON:0003929,6.48e-20,54;UBERON:0005172,6.48e-20,54;UBERON:0005173,6.48e-20,54;UBERON:0002108,2.11e-18,4;UBERON:0002530,3.17e-18,59;UBERON:0002417,6.39e-18,60;UBERON:0000916,6.39e-18,60;UBERON:0004921,8.97e-15,118;UBERON:0005911,4.30e-13,82;UBERON:0001041,2.47e-12,87;UBERON:0001007,5.33e-12,145;UBERON:0001555,5.33e-12,145;UBERON:0007026,5.33e-12,145;UBERON:0004119,7.41e-11,160;UBERON:0000925,7.41e-11,160;UBERON:0006595,7.41e-11,160;UBERON:0005177,1.33e-10,101;UBERON:0009569,1.52e-09,112;UBERON:0003914,3.96e-09,117;UBERON:0005256,9.56e-09,122;UBERON:0011216,1.33e-07,223;UBERON:0000490,3.63e-07,148|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.87285243752816,2.94848165003288,3.54473944008842,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.847294206991012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12714592229504,2.39005989305383,1.01105315781277,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.22414914091781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.389134845943,1.09279780251979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p54@APOB}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=338 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=603 | |||
|TSSclassifier=N | |||
|UniProt=P04114 | |||
|association_with_transcript=-387bp_to_M17367_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_54_at_APOB_5end | |||
|id=chr2:21235116..21235125,- | |||
|ontology_enrichment_celltype=CL:0000181!1.59e-33!12;CL:0000417!1.59e-33!12;CL:0000668!1.59e-33!12;CL:0000414!1.59e-33!12;CL:0000412!1.59e-33!12;CL:0000182!1.59e-33!12;CL:0000223!2.83e-11!59 | |||
|ontology_enrichment_celltype_v019=CL:0000182;1.10e-65;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.16e-65,12;CL:0000223,1.01e-13,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;2.73e-32;11!UBERON:0009497;2.04e-27;13!UBERON:0001041;3.70e-12;30!UBERON:0003104;1.13e-11;31!CL:0000223;3.54e-10;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!1.55e-28!19;UBERON:0006925!1.55e-28!19;UBERON:0008836!1.55e-28!19;UBERON:0008835!1.43e-24!22;UBERON:0003894!1.43e-24!22;UBERON:0009854!1.76e-23!23;UBERON:0007499!1.48e-21!25;UBERON:0009497!1.48e-21!25;UBERON:0000015!1.48e-21!25;UBERON:0002423!1.48e-21!25;UBERON:0006235!1.48e-21!25;UBERON:0004161!1.48e-21!25;UBERON:0005057!1.05e-20!26;UBERON:0009856!1.05e-20!26;UBERON:0003929!2.39e-19!54;UBERON:0002365!2.85e-17!31;UBERON:0002330!2.85e-17!31;UBERON:0002368!3.15e-15!35;UBERON:0004921!7.97e-15!129;UBERON:0004185!7.97e-15!129;UBERON:0002530!2.92e-14!59;UBERON:0005911!2.70e-12!82;UBERON:0001007!5.07e-12!155;UBERON:0001555!5.07e-12!155;UBERON:0007026!5.07e-12!155;UBERON:0000949!1.06e-11!45;UBERON:0004119!7.28e-11!169;UBERON:0000925!7.28e-11!169;UBERON:0006595!7.28e-11!169;UBERON:0000160!8.95e-10!27;UBERON:0005172!1.88e-09!55;UBERON:0005173!1.88e-09!55;UBERON:0002417!1.87e-08!61;UBERON:0000916!1.87e-08!61;UBERON:0005409!1.41e-07!35;UBERON:0000490!9.48e-07!138 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;1.82e-56;19!UBERON:0006925;1.82e-56;19!UBERON:0002423;5.80e-43;25!UBERON:0002365;5.86e-34;31!UBERON:0002330;5.86e-34;31!UBERON:0002368;1.23e-28;33!UBERON:0000949;4.51e-23;43!UBERON:0002108;2.30e-18;4!UBERON:0005172;3.10e-13;52!UBERON:0005173;3.10e-13;52!UBERON:0002530;5.19e-12;57!UBERON:0001007;9.26e-12;81!UBERON:0002417;3.65e-11;58!UBERON:0000916;3.65e-11;58 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.97e-56,19;UBERON:0006925,1.97e-56,19;UBERON:0008836,1.97e-56,19;UBERON:0008835,9.14e-49,22;UBERON:0003894,9.14e-49,22;UBERON:0009854,1.18e-46,23;UBERON:0007499,6.18e-43,25;UBERON:0009497,6.18e-43,25;UBERON:0000015,6.18e-43,25;UBERON:0002423,6.18e-43,25;UBERON:0006235,6.18e-43,25;UBERON:0004161,6.18e-43,25;UBERON:0009856,2.73e-41,26;UBERON:0002365,1.18e-34,31;UBERON:0002330,1.18e-34,31;UBERON:0002368,1.05e-30,35;UBERON:0000949,6.78e-24,45;UBERON:0003929,6.48e-20,54;UBERON:0005172,6.48e-20,54;UBERON:0005173,6.48e-20,54;UBERON:0002108,2.11e-18,4;UBERON:0002530,3.17e-18,59;UBERON:0002417,6.39e-18,60;UBERON:0000916,6.39e-18,60;UBERON:0004921,8.97e-15,118;UBERON:0005911,4.30e-13,82;UBERON:0001041,2.47e-12,87;UBERON:0001007,5.33e-12,145;UBERON:0001555,5.33e-12,145;UBERON:0007026,5.33e-12,145;UBERON:0004119,7.41e-11,160;UBERON:0000925,7.41e-11,160;UBERON:0006595,7.41e-11,160;UBERON:0005177,1.33e-10,101;UBERON:0009569,1.52e-09,112;UBERON:0003914,3.96e-09,117;UBERON:0005256,9.56e-09,122;UBERON:0011216,1.33e-07,223;UBERON:0000490,3.63e-07,148 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.87285243752816,2.94848165003288,3.54473944008842,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.847294206991012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12714592229504,2.39005989305383,1.01105315781277,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.22414914091781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.389134845943,1.09279780251979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p54@APOB | |||
}} |
Revision as of 16:26, 12 September 2013
Short description: | p54@APOB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_54_at_APOB_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -387bp_to_M17367_5end |
EntrezGene: | APOB |
HGNC: | 603 |
UniProt: | P04114 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.16e-65 | 12 |
endodermal cell | 1.01e-13 | 58 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.