FFCP PHASE1:Hg19::chr3:165178296..165178305,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C221|description=CAGE_peak_at_chr3:165178296..165178305,+|id=chr3:165178296..165178305,+|ontology_enrichment_celltype=CL:0000066!1.77e-21!254;CL:0002076!1.50e-15!43;CL:0000223!1.64e-11!59;CL:0002368!5.96e-10!13;CL:0002541!3.24e-09!3;CL:0002621!1.62e-08!3;CL:1000507!1.29e-07!12;CL:1000494!1.29e-07!12;CL:0000240!3.04e-07!6;CL:0000311!3.04e-07!6;CL:0000079!3.04e-07!6;CL:0000237!3.04e-07!6;CL:0000036!3.04e-07!6;CL:0000357!3.04e-07!6;CL:0000114!3.04e-07!6;CL:0000063!7.39e-07!578|ontology_enrichment_celltype_v019=CL:0002368;1.35e-17;13!CL:0002202;1.67e-16;9!CL:0002632;1.67e-16;9!CL:0002541;5.13e-13;3!CL:0000307;5.13e-13;3!CL:0000312;2.49e-08;5!CL:0000240;4.45e-07;6!CL:0000311;4.45e-07;6!CL:0000079;4.45e-07;6!CL:0000237;4.45e-07;6|ontology_enrichment_celltype_v019_2=CL:0002368,1.12e-17,13;CL:0002202,1.40e-16,9;CL:0002632,1.40e-16,9;CL:0000068,5.81e-13,3;CL:0000069,5.81e-13,3;CL:0000307,5.81e-13,3;CL:0000377,5.81e-13,3;CL:0002541,6.97e-13,3;CL:0000066,8.87e-09,253;CL:0000312,2.73e-08,5;CL:0002076,1.91e-07,42;CL:0000240,4.80e-07,6;CL:0000311,4.80e-07,6;CL:0000079,4.80e-07,6;CL:0000237,4.80e-07,6;CL:0000036,4.80e-07,6;CL:0000357,4.80e-07,6;CL:0000114,4.80e-07,6;CL:0000223,5.33e-07,58|ontology_enrichment_development_v019=CL:0000377;5.13e-13;3!CL:0000357;4.45e-07;6!CL:0000114;4.45e-07;6|ontology_enrichment_disease=DOID:1749!1.18e-08!14;DOID:305!1.76e-07!106;DOID:4468!7.69e-07!2;DOID:4929!7.91e-07!2|ontology_enrichment_disease_v019=DOID:4929;4.94e-19;2|ontology_enrichment_disease_v019_2=DOID:4929,1.03e-18,2|ontology_enrichment_uberon=UBERON:0005631!2.80e-11!14;UBERON:0000158!2.80e-11!14;UBERON:0000476!3.24e-09!3;UBERON:0000920!3.24e-09!3;UBERON:0006554!1.42e-08!44;UBERON:0001949!1.62e-08!3;UBERON:0001008!2.59e-08!45;UBERON:0004119!1.13e-07!169;UBERON:0000925!1.13e-07!169;UBERON:0006595!1.13e-07!169;UBERON:0009773!1.29e-07!12;UBERON:0001231!1.29e-07!12;UBERON:0004810!1.29e-07!12;UBERON:0000058!4.26e-07!26|ontology_enrichment_uberon_v019=UBERON:0003124;5.13e-13;3!UBERON:0000920;5.13e-13;3!UBERON:0007195;2.17e-10;1!UBERON:0004913;2.17e-10;1!UBERON:0003703;2.17e-10;1!UBERON:0001174;2.17e-10;1!UBERON:0004914;2.17e-10;1!UBERON:0002394;3.37e-10;4!UBERON:0003928;3.37e-10;4!UBERON:0007196;5.51e-10;15!UBERON:0001558;5.51e-10;15!UBERON:0000058;5.74e-09;10!UBERON:0005631;1.06e-08;10!UBERON:0000158;1.06e-08;10|ontology_enrichment_uberon_v019_2=UBERON:0000920,6.97e-13,3;UBERON:0004913,3.29e-10,1;UBERON:0003703,3.29e-10,1;UBERON:0001174,3.29e-10,1;UBERON:0004914,3.29e-10,1;UBERON:0007195,3.96e-10,1;UBERON:0007196,4.96e-10,15;UBERON:0001558,4.96e-10,15;UBERON:0002394,5.26e-07,6;UBERON:0003928,5.26e-07,6|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.436882744260345,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0.229240217243854,0,0,0,0,0.154816123316076,1.83884244895785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0,0,0.773043412653187,0.272746120590835,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0.109750285408626,2.24803506515239,1.3068766413512,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40354529212299,0.184161977871793,0,0,0,0.451199612907412,1.61732207919271,0.784349769176855,0,1.58327443339314,0,0,0,0,0,0,0.254876273045038,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,2.31398881505369,0.192190067365106,0.510450849978337,0,0.929691098594572,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.73199802905922,0,1.08890984861323,0,0.86101074534246,0,0,0.918893600827838,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935702702041099,0,0,0,15.3433519275463,1.43246690842614,0,0.614321404198464,0,0,0,0,0,0,0,0,0,0,0,2.15684042753584,0,0,0,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5950057986596,0.549585560411174,1.06606955203727,0,0,0,0,0,0,0,0,1.89898258075224,0.816164040795739,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277349346026277,0,0.587954384486266,0.261177619741208,0,0,0,0,0,0,0,0,0,0.19871461170299,0,0,0.320635281006135,0,0,0,0,0,0,0.124252535565433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C221 | |||
|description=CAGE_peak_at_chr3:165178296..165178305,+ | |||
|id=chr3:165178296..165178305,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.77e-21!254;CL:0002076!1.50e-15!43;CL:0000223!1.64e-11!59;CL:0002368!5.96e-10!13;CL:0002541!3.24e-09!3;CL:0002621!1.62e-08!3;CL:1000507!1.29e-07!12;CL:1000494!1.29e-07!12;CL:0000240!3.04e-07!6;CL:0000311!3.04e-07!6;CL:0000079!3.04e-07!6;CL:0000237!3.04e-07!6;CL:0000036!3.04e-07!6;CL:0000357!3.04e-07!6;CL:0000114!3.04e-07!6;CL:0000063!7.39e-07!578 | |||
|ontology_enrichment_celltype_v019=CL:0002368;1.35e-17;13!CL:0002202;1.67e-16;9!CL:0002632;1.67e-16;9!CL:0002541;5.13e-13;3!CL:0000307;5.13e-13;3!CL:0000312;2.49e-08;5!CL:0000240;4.45e-07;6!CL:0000311;4.45e-07;6!CL:0000079;4.45e-07;6!CL:0000237;4.45e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,1.12e-17,13;CL:0002202,1.40e-16,9;CL:0002632,1.40e-16,9;CL:0000068,5.81e-13,3;CL:0000069,5.81e-13,3;CL:0000307,5.81e-13,3;CL:0000377,5.81e-13,3;CL:0002541,6.97e-13,3;CL:0000066,8.87e-09,253;CL:0000312,2.73e-08,5;CL:0002076,1.91e-07,42;CL:0000240,4.80e-07,6;CL:0000311,4.80e-07,6;CL:0000079,4.80e-07,6;CL:0000237,4.80e-07,6;CL:0000036,4.80e-07,6;CL:0000357,4.80e-07,6;CL:0000114,4.80e-07,6;CL:0000223,5.33e-07,58 | |||
|ontology_enrichment_development_v019=CL:0000377;5.13e-13;3!CL:0000357;4.45e-07;6!CL:0000114;4.45e-07;6 | |||
|ontology_enrichment_disease=DOID:1749!1.18e-08!14;DOID:305!1.76e-07!106;DOID:4468!7.69e-07!2;DOID:4929!7.91e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:4929;4.94e-19;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4929,1.03e-18,2 | |||
|ontology_enrichment_uberon=UBERON:0005631!2.80e-11!14;UBERON:0000158!2.80e-11!14;UBERON:0000476!3.24e-09!3;UBERON:0000920!3.24e-09!3;UBERON:0006554!1.42e-08!44;UBERON:0001949!1.62e-08!3;UBERON:0001008!2.59e-08!45;UBERON:0004119!1.13e-07!169;UBERON:0000925!1.13e-07!169;UBERON:0006595!1.13e-07!169;UBERON:0009773!1.29e-07!12;UBERON:0001231!1.29e-07!12;UBERON:0004810!1.29e-07!12;UBERON:0000058!4.26e-07!26 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;5.13e-13;3!UBERON:0000920;5.13e-13;3!UBERON:0007195;2.17e-10;1!UBERON:0004913;2.17e-10;1!UBERON:0003703;2.17e-10;1!UBERON:0001174;2.17e-10;1!UBERON:0004914;2.17e-10;1!UBERON:0002394;3.37e-10;4!UBERON:0003928;3.37e-10;4!UBERON:0007196;5.51e-10;15!UBERON:0001558;5.51e-10;15!UBERON:0000058;5.74e-09;10!UBERON:0005631;1.06e-08;10!UBERON:0000158;1.06e-08;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,6.97e-13,3;UBERON:0004913,3.29e-10,1;UBERON:0003703,3.29e-10,1;UBERON:0001174,3.29e-10,1;UBERON:0004914,3.29e-10,1;UBERON:0007195,3.96e-10,1;UBERON:0007196,4.96e-10,15;UBERON:0001558,4.96e-10,15;UBERON:0002394,5.26e-07,6;UBERON:0003928,5.26e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.436882744260345,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0.229240217243854,0,0,0,0,0.154816123316076,1.83884244895785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0,0,0.773043412653187,0.272746120590835,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0.109750285408626,2.24803506515239,1.3068766413512,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40354529212299,0.184161977871793,0,0,0,0.451199612907412,1.61732207919271,0.784349769176855,0,1.58327443339314,0,0,0,0,0,0,0.254876273045038,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,2.31398881505369,0.192190067365106,0.510450849978337,0,0.929691098594572,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.73199802905922,0,1.08890984861323,0,0.86101074534246,0,0,0.918893600827838,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935702702041099,0,0,0,15.3433519275463,1.43246690842614,0,0.614321404198464,0,0,0,0,0,0,0,0,0,0,0,2.15684042753584,0,0,0,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5950057986596,0.549585560411174,1.06606955203727,0,0,0,0,0,0,0,0,1.89898258075224,0.816164040795739,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277349346026277,0,0.587954384486266,0.261177619741208,0,0,0,0,0,0,0,0,0,0.19871461170299,0,0,0.320635281006135,0,0,0,0,0,0,0.124252535565433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,1.91502377331055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.457680136793847,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,1.59020231351293,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392590874004102,0,0.366857197043358,0,0,0,0,0,0,0,0,0.655087670040387,1.18284868973636,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354809480650555,0,0,0.0679697329768317,0,0.945550727071746,0.111231401892069,0,0,0.560544326627578,0,0.647782773655864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41157948686277,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448527450322454,0,0,0,0,0,0,0,0,0,0,1.25755282949222,0,0,0,0,0,0 | |||
|short_description=p@chr3:165178296..165178305,+ | |||
}} |
Revision as of 22:33, 12 September 2013
Short description: | p@chr3:165178296..165178305, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:165178296..165178305, + |
Coexpression cluster: | C221_alveolar_Osteoblast_Myoblast_mesenchymal_liposarcoma_Smooth_hepatocellular |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 1.12e-17 | 13 |
epithelial cell of tracheobronchial tree | 1.40e-16 | 9 |
epithelial cell of lower respiratory tract | 1.40e-16 | 9 |
duct epithelial cell | 5.81e-13 | 3 |
branched duct epithelial cell | 5.81e-13 | 3 |
tracheal epithelial cell | 5.81e-13 | 3 |
tracheoblast | 5.81e-13 | 3 |
chorionic membrane mesenchymal stem cell | 6.97e-13 | 3 |
epithelial cell | 8.87e-09 | 253 |
keratinocyte | 2.73e-08 | 5 |
endo-epithelial cell | 1.91e-07 | 42 |
stratified squamous epithelial cell | 4.80e-07 | 6 |
keratin accumulating cell | 4.80e-07 | 6 |
stratified epithelial cell | 4.80e-07 | 6 |
keratinizing barrier epithelial cell | 4.80e-07 | 6 |
epithelial fate stem cell | 4.80e-07 | 6 |
stratified epithelial stem cell | 4.80e-07 | 6 |
surface ectodermal cell | 4.80e-07 | 6 |
endodermal cell | 5.33e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 6.97e-13 | 3 |
hepatopancreatic ampulla | 3.29e-10 | 1 |
extrahepatic bile duct | 3.29e-10 | 1 |
common bile duct | 3.29e-10 | 1 |
duodenal papilla | 3.29e-10 | 1 |
stroma of bone marrow | 3.96e-10 | 1 |
tracheobronchial tree | 4.96e-10 | 15 |
lower respiratory tract | 4.96e-10 | 15 |
bile duct | 5.26e-07 | 6 |
digestive system duct | 5.26e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
tubular adenocarcinoma | 1.03e-18 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.