FFCP PHASE1:Hg19::chr4:99942777..99942781,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C83|description=CAGE_peak_at_chr4:99942777..99942781,-|id=chr4:99942777..99942781,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002262;1.21e-13;2!CL:1000398;1.21e-13;2!CL:0000322;1.19e-09;3!CL:0002590;1.53e-09;3!CL:0002594;1.80e-07;4|ontology_enrichment_celltype_v019_2=CL:0002262,1.07e-13,2;CL:1000398,1.07e-13,2;CL:0000322,1.19e-09,3;CL:0002590,1.54e-09,3;CL:0002594,2.04e-07,4|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007100!6.43e-09!27|ontology_enrichment_uberon_v019=UBERON:0001281;1.21e-13;2!UBERON:0003497;1.21e-13;2!UBERON:0003909;1.21e-13;2!UBERON:0003835;1.21e-13;2!UBERON:0004821;1.19e-09;3!UBERON:0007499;1.19e-09;3!UBERON:0003215;1.19e-09;3!UBERON:0010368;1.19e-09;3!UBERON:0009911;1.19e-09;3!UBERON:0002299;1.19e-09;3!UBERON:0006524;1.19e-09;3!UBERON:0008874;1.19e-09;3!UBERON:0002169;1.19e-09;3!UBERON:0004894;1.19e-09;3!UBERON:0001280;1.53e-09;3!UBERON:0004647;1.53e-09;3!UBERON:0009856;1.49e-07;4!UBERON:0001310;1.80e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0001281,1.07e-13,2;UBERON:0003497,1.07e-13,2;UBERON:0003909,1.07e-13,2;UBERON:0003835,1.07e-13,2;UBERON:0004821,1.19e-09,3;UBERON:0003215,1.19e-09,3;UBERON:0010368,1.19e-09,3;UBERON:0009911,1.19e-09,3;UBERON:0002299,1.19e-09,3;UBERON:0006524,1.19e-09,3;UBERON:0008874,1.19e-09,3;UBERON:0002169,1.19e-09,3;UBERON:0004894,1.19e-09,3;UBERON:0001280,1.41e-09,3;UBERON:0004647,1.41e-09,3;UBERON:0005171,1.41e-09,3;UBERON:0001310,2.04e-07,4|phase1_expression=0,0,0,0,0,0,0,0,0,3.93174298402414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25326102332916,0,0,0,0.560677600142307,1.06748995729705,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.453728732640084,0,0,0,0.300091096084402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0,1.74306691720059,6.19832545328754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0.482561763430822,0,0,0.177561725313127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429374660225974,0,0.632758849437452,1.14378116354295,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,1.01455188481352,0,0,0,0.196498082026242,0.35667105148125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,0,0,0,87.8727338771669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.848118428603645,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0.279282401272254,0,0,0.199679000498991,0,0.223171457441873,0.0671834724867263,0.720599767084807,0,0,0.0824158583811665,0.13480708770837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.864221491201268,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0.796191777397232,0,0.343395705182793,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0.202056159043763,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr4:99942777..99942781,-}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C83 | |||
|description=CAGE_peak_at_chr4:99942777..99942781,- | |||
|id=chr4:99942777..99942781,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002262;1.21e-13;2!CL:1000398;1.21e-13;2!CL:0000322;1.19e-09;3!CL:0002590;1.53e-09;3!CL:0002594;1.80e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002262,1.07e-13,2;CL:1000398,1.07e-13,2;CL:0000322,1.19e-09,3;CL:0002590,1.54e-09,3;CL:0002594,2.04e-07,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007100!6.43e-09!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0001281;1.21e-13;2!UBERON:0003497;1.21e-13;2!UBERON:0003909;1.21e-13;2!UBERON:0003835;1.21e-13;2!UBERON:0004821;1.19e-09;3!UBERON:0007499;1.19e-09;3!UBERON:0003215;1.19e-09;3!UBERON:0010368;1.19e-09;3!UBERON:0009911;1.19e-09;3!UBERON:0002299;1.19e-09;3!UBERON:0006524;1.19e-09;3!UBERON:0008874;1.19e-09;3!UBERON:0002169;1.19e-09;3!UBERON:0004894;1.19e-09;3!UBERON:0001280;1.53e-09;3!UBERON:0004647;1.53e-09;3!UBERON:0009856;1.49e-07;4!UBERON:0001310;1.80e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001281,1.07e-13,2;UBERON:0003497,1.07e-13,2;UBERON:0003909,1.07e-13,2;UBERON:0003835,1.07e-13,2;UBERON:0004821,1.19e-09,3;UBERON:0003215,1.19e-09,3;UBERON:0010368,1.19e-09,3;UBERON:0009911,1.19e-09,3;UBERON:0002299,1.19e-09,3;UBERON:0006524,1.19e-09,3;UBERON:0008874,1.19e-09,3;UBERON:0002169,1.19e-09,3;UBERON:0004894,1.19e-09,3;UBERON:0001280,1.41e-09,3;UBERON:0004647,1.41e-09,3;UBERON:0005171,1.41e-09,3;UBERON:0001310,2.04e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,3.93174298402414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25326102332916,0,0,0,0.560677600142307,1.06748995729705,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.453728732640084,0,0,0,0.300091096084402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0,1.74306691720059,6.19832545328754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0.482561763430822,0,0,0.177561725313127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429374660225974,0,0.632758849437452,1.14378116354295,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,1.01455188481352,0,0,0,0.196498082026242,0.35667105148125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,0,0,0,87.8727338771669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.848118428603645,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0.279282401272254,0,0,0.199679000498991,0,0.223171457441873,0.0671834724867263,0.720599767084807,0,0,0.0824158583811665,0.13480708770837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.864221491201268,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0.796191777397232,0,0.343395705182793,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0.202056159043763,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr4:99942777..99942781,- | |||
}} |
Revision as of 12:27, 13 September 2013
Short description: | p@chr4:99942777..99942781, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:99942777..99942781, - |
Coexpression cluster: | C83_choriocarcinoma_pancreatic_placenta_chorionic_HES3GFP_testicular_amniotic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of sinusoid | 1.07e-13 | 2 |
endothelial cell of hepatic sinusoid | 1.07e-13 | 2 |
pneumocyte | 1.19e-09 | 3 |
smooth muscle cell of the brain vasculature | 1.54e-09 | 3 |
smooth muscle cell of the umbilical artery | 2.04e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
hepatic sinusoid | 1.07e-13 | 2 |
abdomen blood vessel | 1.07e-13 | 2 |
sinusoid | 1.07e-13 | 2 |
abdominal segment blood vessel | 1.07e-13 | 2 |
pulmonary alveolus epithelium | 1.19e-09 | 3 |
alveolus | 1.19e-09 | 3 |
pulmonary lobule | 1.19e-09 | 3 |
lobule | 1.19e-09 | 3 |
alveolus of lung | 1.19e-09 | 3 |
alveolar system | 1.19e-09 | 3 |
pulmonary acinus | 1.19e-09 | 3 |
alveolar sac | 1.19e-09 | 3 |
alveolar wall | 1.19e-09 | 3 |
liver parenchyma | 1.41e-09 | 3 |
liver lobule | 1.41e-09 | 3 |
hepatic duct | 1.41e-09 | 3 |
umbilical artery | 2.04e-07 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.