FFCP PHASE1:Hg19::chr5:49963613..49963627,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr5:49963613..49963627,-|id=chr5:49963613..49963627,-|ontology_enrichment_celltype=CL:0000838!8.07e-13!52;CL:0000542!1.00e-12!53;CL:0000051!1.00e-12!53;CL:0002087!1.51e-12!119;CL:0000738!2.63e-11!140;CL:0002031!1.14e-10!124;CL:0000945!1.12e-09!24;CL:0000826!1.12e-09!24;CL:0000236!6.95e-07!14|ontology_enrichment_celltype_v019=CL:0000236;4.42e-14;13!CL:0000625;2.61e-13;11!CL:0000791;1.60e-12;18!CL:0000789;1.60e-12;18!CL:0002419;1.60e-12;18!CL:0000542;3.07e-12;53!CL:0000945;6.86e-11;24!CL:0000084;1.58e-08;25!CL:1000746;1.33e-07;7!CL:1000612;1.33e-07;7!CL:0000650;1.74e-07;2!CL:1000500;1.74e-07;2!CL:1000618;1.74e-07;2!CL:1001318;1.74e-07;2!CL:0002173;1.74e-07;2!CL:0000575;5.34e-07;2|ontology_enrichment_celltype_v019_2=CL:0000838,1.90e-21,52;CL:0000542,6.18e-21,53;CL:0000051,6.18e-21,53;CL:0000625,1.00e-13,11;CL:0000791,4.80e-13,18;CL:0000789,4.80e-13,18;CL:0002420,4.80e-13,18;CL:0002419,4.80e-13,18;CL:0000790,4.80e-13,18;CL:0000236,5.55e-13,14;CL:0000945,6.78e-11,24;CL:0000826,6.78e-11,24;CL:0000738,9.33e-10,136;CL:0002087,1.54e-09,115;CL:0002031,6.60e-09,120;CL:0000084,6.94e-09,25;CL:0000827,6.94e-09,25;CL:0000988,3.09e-08,177;CL:0002032,4.44e-08,161;CL:0000837,4.44e-08,161;CL:1000746,1.71e-07,7;CL:1000612,1.71e-07,7;CL:0000037,1.78e-07,168;CL:0000650,3.31e-07,2;CL:1000500,3.31e-07,2;CL:1000618,3.31e-07,2;CL:1001318,3.31e-07,2;CL:0002173,3.31e-07,2|ontology_enrichment_development_v019=CL:0000790;1.60e-12;18!CL:0000051;3.07e-12;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0000074;1.33e-07;7!UBERON:0001229;1.33e-07;7!UBERON:0003567;1.74e-07;2!UBERON:0003838;1.74e-07;2!UBERON:0003586;1.74e-07;2!UBERON:0005169;1.74e-07;2!UBERON:0002321;1.74e-07;2!UBERON:0005215;1.74e-07;2!UBERON:0002303;1.74e-07;2!UBERON:0002319;1.74e-07;2!UBERON:0000007;5.34e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0010532,1.71e-07,7;UBERON:0000074,1.71e-07,7;UBERON:0001229,1.71e-07,7;UBERON:0001230,1.71e-07,7;UBERON:0003220,1.71e-07,7;UBERON:0005749,1.71e-07,7;UBERON:0004199,1.71e-07,7;UBERON:0004209,1.71e-07,7;UBERON:0004198,1.71e-07,7;UBERON:0003567,3.31e-07,2;UBERON:0003838,3.31e-07,2;UBERON:0003586,3.31e-07,2;UBERON:0005169,3.31e-07,2;UBERON:0002321,3.31e-07,2;UBERON:0005215,3.31e-07,2;UBERON:0002303,3.31e-07,2;UBERON:0002319,3.31e-07,2;UBERON:0000007,5.93e-07,2|phase1_expression=0,0,0.422863212287913,0,0,0,0,0,0,0.737201809504527,4.18680700783456,0.218441372130172,0,0.123766352960047,0,0,0.602694528023977,0,0,0.123121058076788,0,0,0.572471974262113,0,0.502170558379211,0.534893840235659,0.738905305049512,0.314843125254717,0.786728553697808,1.15148819429164,1.23852898652861,0.919421224478927,0.90361775633475,0.369754010166788,0.542270404062111,0.426507697462265,0.293600439334847,0.553995408531877,0.200544447470142,1.73608696572681,1.56740831967947,0.647787332037959,0.257575567634187,0.290796477559129,0,0.727752183563449,0.464858073811369,0.411167888021826,0.309706370895104,0.28769239232215,0.512321413058201,0.47296445977717,0.344745680736619,0.645484683583826,0,0.752969358170419,0.272906150057846,0,0,0.320929027076094,0.639337125799041,0.329851300186716,0,0.426224750532694,0.580418477257168,0,0,0.251248665256743,0.521482918420201,0,0,0.368277635987565,0.316462387440884,0.211255286311942,0.637812899895131,0.209658645508376,0.561643155732475,0.300353785683013,0,0,0.79566670879636,0.547992461293902,1.75996244461323,1.09227722252426,0.889509253863555,1.28019066769952,2.80277190925209,1.14950487990897,0.661044872784862,1.90810750907073,0.569212969109448,2.34894875748376,1.14681968437569,0,0.560508562981536,0.263384084775077,1.7703879310245,0.393010762749165,0.205601498999509,0.167186495390678,1.62961133316795,1.89379122293893,1.94826728407911,0.222820913770347,0.294605907474837,0.221533894583621,0.541607727530031,0,0.130059347559878,0.493313713811028,0.276350017785848,0.289803085735052,1.03800594213442,0.802622484269139,0,0.226618685395132,0.766440987203842,0.34362744548263,1.51811815211702,1.59282707162048,1.95325036156926,0,0.301150238155546,1.27986611154418,0,0.473554504088034,2.46338399076314,1.61285394579786,2.94184215361858,2.60683926989038,0,0,1.02290049474824,0,0,0,0,0,0.472674085820339,0.665188192387692,0.43917392846563,0.458426764241994,1.09288586487763,1.11235332835329,0,0.696518949197069,0,0.476981248610684,0,0.74291500265913,0,0,0,0,0.838998872419812,0,0,0,0,0,0.402829317109147,0,0,0,0,0,0,0.225222960966644,0,0,0,0,0,0.436094052142534,0,0.25326102332916,0.132409180813219,0.286836620748814,0.354668382198357,0,0,0.49333509683432,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0.122834317311768,0.103325781175765,0,0.247266929278557,0,0,0,0,0,0,0,0.150238058906597,0.340296549480063,0,0,0.211931901159562,0,0,0,0.37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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr5:49963613..49963627,- | |||
|id=chr5:49963613..49963627,- | |||
|ontology_enrichment_celltype=CL:0000838!8.07e-13!52;CL:0000542!1.00e-12!53;CL:0000051!1.00e-12!53;CL:0002087!1.51e-12!119;CL:0000738!2.63e-11!140;CL:0002031!1.14e-10!124;CL:0000945!1.12e-09!24;CL:0000826!1.12e-09!24;CL:0000236!6.95e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000236;4.42e-14;13!CL:0000625;2.61e-13;11!CL:0000791;1.60e-12;18!CL:0000789;1.60e-12;18!CL:0002419;1.60e-12;18!CL:0000542;3.07e-12;53!CL:0000945;6.86e-11;24!CL:0000084;1.58e-08;25!CL:1000746;1.33e-07;7!CL:1000612;1.33e-07;7!CL:0000650;1.74e-07;2!CL:1000500;1.74e-07;2!CL:1000618;1.74e-07;2!CL:1001318;1.74e-07;2!CL:0002173;1.74e-07;2!CL:0000575;5.34e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.90e-21,52;CL:0000542,6.18e-21,53;CL:0000051,6.18e-21,53;CL:0000625,1.00e-13,11;CL:0000791,4.80e-13,18;CL:0000789,4.80e-13,18;CL:0002420,4.80e-13,18;CL:0002419,4.80e-13,18;CL:0000790,4.80e-13,18;CL:0000236,5.55e-13,14;CL:0000945,6.78e-11,24;CL:0000826,6.78e-11,24;CL:0000738,9.33e-10,136;CL:0002087,1.54e-09,115;CL:0002031,6.60e-09,120;CL:0000084,6.94e-09,25;CL:0000827,6.94e-09,25;CL:0000988,3.09e-08,177;CL:0002032,4.44e-08,161;CL:0000837,4.44e-08,161;CL:1000746,1.71e-07,7;CL:1000612,1.71e-07,7;CL:0000037,1.78e-07,168;CL:0000650,3.31e-07,2;CL:1000500,3.31e-07,2;CL:1000618,3.31e-07,2;CL:1001318,3.31e-07,2;CL:0002173,3.31e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;1.60e-12;18!CL:0000051;3.07e-12;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000074;1.33e-07;7!UBERON:0001229;1.33e-07;7!UBERON:0003567;1.74e-07;2!UBERON:0003838;1.74e-07;2!UBERON:0003586;1.74e-07;2!UBERON:0005169;1.74e-07;2!UBERON:0002321;1.74e-07;2!UBERON:0005215;1.74e-07;2!UBERON:0002303;1.74e-07;2!UBERON:0002319;1.74e-07;2!UBERON:0000007;5.34e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010532,1.71e-07,7;UBERON:0000074,1.71e-07,7;UBERON:0001229,1.71e-07,7;UBERON:0001230,1.71e-07,7;UBERON:0003220,1.71e-07,7;UBERON:0005749,1.71e-07,7;UBERON:0004199,1.71e-07,7;UBERON:0004209,1.71e-07,7;UBERON:0004198,1.71e-07,7;UBERON:0003567,3.31e-07,2;UBERON:0003838,3.31e-07,2;UBERON:0003586,3.31e-07,2;UBERON:0005169,3.31e-07,2;UBERON:0002321,3.31e-07,2;UBERON:0005215,3.31e-07,2;UBERON:0002303,3.31e-07,2;UBERON:0002319,3.31e-07,2;UBERON:0000007,5.93e-07,2 | |||
|phase1_expression=0,0,0.422863212287913,0,0,0,0,0,0,0.737201809504527,4.18680700783456,0.218441372130172,0,0.123766352960047,0,0,0.602694528023977,0,0,0.123121058076788,0,0,0.572471974262113,0,0.502170558379211,0.534893840235659,0.738905305049512,0.314843125254717,0.786728553697808,1.15148819429164,1.23852898652861,0.919421224478927,0.90361775633475,0.369754010166788,0.542270404062111,0.426507697462265,0.293600439334847,0.553995408531877,0.200544447470142,1.73608696572681,1.56740831967947,0.647787332037959,0.257575567634187,0.290796477559129,0,0.727752183563449,0.464858073811369,0.411167888021826,0.309706370895104,0.28769239232215,0.512321413058201,0.47296445977717,0.344745680736619,0.645484683583826,0,0.752969358170419,0.272906150057846,0,0,0.320929027076094,0.639337125799041,0.329851300186716,0,0.426224750532694,0.580418477257168,0,0,0.251248665256743,0.521482918420201,0,0,0.368277635987565,0.316462387440884,0.211255286311942,0.637812899895131,0.209658645508376,0.561643155732475,0.300353785683013,0,0,0.79566670879636,0.547992461293902,1.75996244461323,1.09227722252426,0.889509253863555,1.28019066769952,2.80277190925209,1.14950487990897,0.661044872784862,1.90810750907073,0.569212969109448,2.34894875748376,1.14681968437569,0,0.560508562981536,0.263384084775077,1.7703879310245,0.393010762749165,0.205601498999509,0.167186495390678,1.62961133316795,1.89379122293893,1.94826728407911,0.222820913770347,0.294605907474837,0.221533894583621,0.541607727530031,0,0.130059347559878,0.493313713811028,0.276350017785848,0.289803085735052,1.03800594213442,0.802622484269139,0,0.226618685395132,0.766440987203842,0.34362744548263,1.51811815211702,1.59282707162048,1.95325036156926,0,0.301150238155546,1.27986611154418,0,0.473554504088034,2.46338399076314,1.61285394579786,2.94184215361858,2.60683926989038,0,0,1.02290049474824,0,0,0,0,0,0.472674085820339,0.665188192387692,0.43917392846563,0.458426764241994,1.09288586487763,1.11235332835329,0,0.696518949197069,0,0.476981248610684,0,0.74291500265913,0,0,0,0,0.838998872419812,0,0,0,0,0,0.402829317109147,0,0,0,0,0,0,0.225222960966644,0,0,0,0,0,0.436094052142534,0,0.25326102332916,0.132409180813219,0.286836620748814,0.354668382198357,0,0,0.49333509683432,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0.122834317311768,0.103325781175765,0,0.247266929278557,0,0,0,0,0,0,0,0.150238058906597,0.340296549480063,0,0,0.211931901159562,0,0,0,0.37223371266318,0,0,0,0,0,0,0,0.339121184620975,0.193260853163297,0.545492241181669,0.573609190778008,0.121973706129595,0.132529768321485,0.116193942869518,0.10366105501537,0.504641701751257,0,0,0.643240938192885,0,0,0,0.118306800039844,0.674338760312407,0,0,0.217879444092406,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0.109750285408626,1.1240175325762,0.502644862058154,0.370353780634118,0.325808305310325,0,1.44331342025273,0.115930404975077,0.469634776943287,0,0.462985512576611,0.190254152234598,0,0,0.246217006087397,0.234004265139238,0,0,0.335964256397719,0.425325291727159,0,0,0.383382679165211,0,0.088048434013226,0,0.288239906833923,0.25248486685276,0.063497894292169,0,0,0,0,0,1.14330573052231,0,0,0,0.258543431515556,0,1.690605505112,0.26593811658487,0,0,0,0,0.142977993658148,0,0,0,0.710783897485092,0,0.602878754119172,0,0.599837947092342,0,0,4.21667878966063,0,0,0,0.144781306667579,0,0.358121926479791,0.112085143993527,0.985153801009636,1.72502059887614,2.69520376187472,0,0,0,0.167516265334349,0,1.49801404789436,0,0.414415513436035,0,1.00034104211935,0,0.207970861530807,0,0.315404830067869,0,0,0,0,0,0,0.260650843404249,0.587403472388222,0,0.206768026122887,0,0.533637789017222,0.303127571446259,1.66435439510497,0,0,0,0,0.384417447767103,0,0,1.48418066444991,0.154209693802656,0,0,0,0,0,0.40101294060657,0,0,0.364182336013434,0.524497659837696,0,0.616122696835318,0,0,0.211103257785751,0,0,0,1.54227252690289,1.08378575017541,3.01013864312912,0.509752546090077,0.831076008928724,0.895499018888713,0,0,0.256450125116389,0.328014645699706,0.325378394664303,0.824328093181778,0.27470839445503,0,1.14853107599234,0.650060246036521,0,0.193341436584244,0,0,0,0,0,0.0852266274161009,0.178064071293475,0.165284915360978,0,0.255225424989168,0.30347334256665,0,0,0,0.924100740528266,0.532306030317022,0,0.55597265731176,0.143124886741991,0.372158369359667,0,0.38126038784765,0,0,0,0,0.179872457583315,0,0,0,0,0,0.48763373908959,1.21856744815642,0,0.545999645631943,0.282810863907425,0,0,0.66343897524122,0,0,0,0.202910376962704,0.6196469961995,0,0,0.0982490410131212,0.35667105148125,0.354761064070598,0,0,0,0,0.288666338176536,0,0,0.376575203107117,1.72202149068492,0,0,0.459446800413919,0.507447609232169,0,0.569647187174163,0.476463550915578,0.822724546172388,0,1.08006287447623,1.58625035258854,0,0,0.245040215981032,0.185803175125719,0,0.0711418433484141,0.159426272728822,0,0.5745161103971,0,0,0.280797178113459,0.228234679033192,0,2.50634477090067,0,0.1605880751037,0,0,0,0,0,0.500547425135725,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0.890894042497916,0,0,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| |||
|short_description=p@chr5:49963613..49963627,- | |||
}} |
Revision as of 15:48, 13 September 2013
Short description: | p@chr5:49963613..49963627, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr5:49963613..49963627, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.90e-21 | 52 |
lymphocyte | 6.18e-21 | 53 |
common lymphoid progenitor | 6.18e-21 | 53 |
CD8-positive, alpha-beta T cell | 1.00e-13 | 11 |
mature alpha-beta T cell | 4.80e-13 | 18 |
alpha-beta T cell | 4.80e-13 | 18 |
immature T cell | 4.80e-13 | 18 |
mature T cell | 4.80e-13 | 18 |
immature alpha-beta T cell | 4.80e-13 | 18 |
B cell | 5.55e-13 | 14 |
lymphocyte of B lineage | 6.78e-11 | 24 |
pro-B cell | 6.78e-11 | 24 |
leukocyte | 9.33e-10 | 136 |
nongranular leukocyte | 1.54e-09 | 115 |
hematopoietic lineage restricted progenitor cell | 6.60e-09 | 120 |
T cell | 6.94e-09 | 25 |
pro-T cell | 6.94e-09 | 25 |
hematopoietic cell | 3.09e-08 | 177 |
hematopoietic oligopotent progenitor cell | 4.44e-08 | 161 |
hematopoietic multipotent progenitor cell | 4.44e-08 | 161 |
glomerular cell | 1.71e-07 | 7 |
kidney corpuscule cell | 1.71e-07 | 7 |
hematopoietic stem cell | 1.78e-07 | 168 |
mesangial cell | 3.31e-07 | 2 |
kidney interstitial cell | 3.31e-07 | 2 |
juxtaglomerular complex cell | 3.31e-07 | 2 |
renal interstitial pericyte | 3.31e-07 | 2 |
extraglomerular mesangial cell | 3.31e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
primitive nephron | 1.71e-07 | 7 |
renal glomerulus | 1.71e-07 | 7 |
renal corpuscle | 1.71e-07 | 7 |
glomerular capsule | 1.71e-07 | 7 |
metanephric mesenchyme | 1.71e-07 | 7 |
glomerular tuft | 1.71e-07 | 7 |
S-shaped body | 1.71e-07 | 7 |
renal vesicle | 1.71e-07 | 7 |
comma-shaped body | 1.71e-07 | 7 |
abdomen connective tissue | 3.31e-07 | 2 |
abdominal segment connective tissue | 3.31e-07 | 2 |
trunk connective tissue | 3.31e-07 | 2 |
interstitial tissue | 3.31e-07 | 2 |
extraglomerular mesangium | 3.31e-07 | 2 |
kidney interstitium | 3.31e-07 | 2 |
juxtaglomerular apparatus | 3.31e-07 | 2 |
mesangium | 3.31e-07 | 2 |
pituitary gland | 5.93e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.