FFCP PHASE1:Hg19::chr6:128222186..128222217,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=387357|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=21569|TSSclassifier=W|UniProt=Q8N1K5,F5H1J9|association_with_transcript=8bp_to_ENST00000368248,ENST00000543064,NM_001010923,NM_001164685,uc011ebt.1_5end|description=CAGE_peak_1_at_THEMIS_5end|id=chr6:128222186..128222217,-|ontology_enrichment_celltype=CL:0000738!4.19e-23!140;CL:0000791!4.04e-20!18;CL:0000789!4.04e-20!18;CL:0002420!4.04e-20!18;CL:0002419!4.04e-20!18;CL:0000790!4.04e-20!18;CL:0000084!4.33e-20!25;CL:0000827!4.33e-20!25;CL:0002087!5.64e-20!119;CL:0002031!1.34e-17!124;CL:0000838!3.26e-16!52;CL:0000542!1.14e-15!53;CL:0000051!1.14e-15!53;CL:0000037!3.14e-14!172;CL:0000566!3.14e-14!172;CL:0000625!2.24e-13!11;CL:0002032!9.07e-13!165;CL:0000837!9.07e-13!165;CL:0000988!3.30e-12!182;CL:0000624!2.38e-07!6;CL:0000766!7.35e-07!76|ontology_enrichment_celltype_v019=CL:0000084;2.02e-30;25!CL:0000791;1.40e-29;18!CL:0000789;1.40e-29;18!CL:0002419;1.40e-29;18!CL:0000625;2.17e-19;11!CL:0000542;7.74e-12;53!CL:0000624;2.71e-10;6|ontology_enrichment_celltype_v019_2=CL:0000084,2.00e-30,25;CL:0000827,2.00e-30,25;CL:0000791,1.39e-29,18;CL:0000789,1.39e-29,18;CL:0002420,1.39e-29,18;CL:0002419,1.39e-29,18;CL:0000790,1.39e-29,18;CL:0000838,5.70e-23,52;CL:0000542,2.40e-22,53;CL:0000051,2.40e-22,53;CL:0000625,2.20e-19,11;CL:0000738,1.49e-14,136;CL:0002087,6.35e-14,115;CL:0000624,2.67e-10,6;CL:0002031,2.81e-10,120;CL:0000037,2.52e-09,168;CL:0000988,3.05e-08,177;CL:0002032,1.29e-07,161;CL:0000837,1.29e-07,161|ontology_enrichment_development_v019=CL:0000790;1.40e-29;18!CL:0000051;7.74e-12;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!1.09e-35!115;UBERON:0002390!1.06e-11!102;UBERON:0003061!1.06e-11!102;UBERON:0002193!9.75e-11!112;UBERON:0000178!8.94e-10!15;UBERON:0000179!8.94e-10!15;UBERON:0000463!8.94e-10!15|ontology_enrichment_uberon_v019=UBERON:0000178;1.01e-14;15!UBERON:0000179;1.01e-14;15!UBERON:0000463;1.01e-14;15!UBERON:0002390;2.09e-10;32!UBERON:0002193;5.28e-07;42|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.37e-17,114;UBERON:0000178,1.03e-14,15;UBERON:0000179,1.03e-14,15;UBERON:0000463,1.03e-14,15;UBERON:0004177,5.24e-09,7;UBERON:0005057,5.24e-09,7;UBERON:0002370,3.15e-08,4;UBERON:0005058,3.15e-08,4;UBERON:0009113,3.15e-08,4;UBERON:0003295,3.15e-08,4;UBERON:0005562,3.15e-08,4;UBERON:0003408,1.57e-07,10|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21598876669059,1.23150884174919,1.73163718890094,0.393364276848904,26.8680578668049,0.928896739896456,0,0,0,0,0,0,5.53995408531877,5.61524452916397,4.34021741431704,1.11957737119962,15.87078963493,4.63636021741536,0.290796477559129,0.755751887377619,0.485168122375632,0.464858073811369,0,0.309706370895104,0,0.512321413058201,0.236482229888585,0.689491361473237,0.645484683583826,0,0.376484679085209,0,0.224723484445085,0.306083892370903,0,0,0.329851300186716,0.199463657621632,0,0.580418477257168,1.70215567407342,0,0.502497330513487,0.521482918420201,0.434377689410233,1.81619850790011,1.47311054395026,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1384259382189,0.587237189370939,0.764546456250458,1.32171328579026,4.48406850385229,0.263384084775077,43.8662787353848,25.1526888159465,31.8682323449239,27.2513987486805,18.2516469314811,11.8361951433683,11.6896037044747,36.3198089445666,6.77593587192126,5.31681347000691,5.1452734115353,12.4248580133905,10.0145697621106,144.376480242028,124.081157985846,207.209206300563,137.016784361744,115.042556078577,116.034431423524,162.9388347991,72.811893784365,60.1348029594602,94.6293648152941,83.4641385529133,98.3136015323192,87.4415880892504,134.313006217373,152.048094051449,113.686961162635,105.839431663676,101.81987161821,64.7157645751391,33.4300244729384,56.0470443026432,0,0,0,0,0,0,0,0,0,0,0.263504357079378,1.76821751921912,0,0,0.324547393654683,0.348259474598534,0.26591592103773,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0.709336764396714,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,101.977975964784,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0.414656231081544,0,0.50496973370552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,41.9198438535792,26.2050911068563,22.8565229351088,14.7594491721711,0,0,0,0,0,2.24702107184155,0,3.31532410748828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,59.5491915233916,18.3357070695824,30.737536647392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.7821073144885,0,0,0,0,0,0,0,0,0,0,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,1.69458841398202,0,0,0.443430153536676,0,19.2830091508224,24.468390628556,21.076945925444,46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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=387357 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21569 | |||
|TSSclassifier=W | |||
|UniProt=Q8N1K5,F5H1J9 | |||
|association_with_transcript=8bp_to_ENST00000368248,ENST00000543064,NM_001010923,NM_001164685,uc011ebt.1_5end | |||
|description=CAGE_peak_1_at_THEMIS_5end | |||
|id=chr6:128222186..128222217,- | |||
|ontology_enrichment_celltype=CL:0000738!4.19e-23!140;CL:0000791!4.04e-20!18;CL:0000789!4.04e-20!18;CL:0002420!4.04e-20!18;CL:0002419!4.04e-20!18;CL:0000790!4.04e-20!18;CL:0000084!4.33e-20!25;CL:0000827!4.33e-20!25;CL:0002087!5.64e-20!119;CL:0002031!1.34e-17!124;CL:0000838!3.26e-16!52;CL:0000542!1.14e-15!53;CL:0000051!1.14e-15!53;CL:0000037!3.14e-14!172;CL:0000566!3.14e-14!172;CL:0000625!2.24e-13!11;CL:0002032!9.07e-13!165;CL:0000837!9.07e-13!165;CL:0000988!3.30e-12!182;CL:0000624!2.38e-07!6;CL:0000766!7.35e-07!76 | |||
|ontology_enrichment_celltype_v019=CL:0000084;2.02e-30;25!CL:0000791;1.40e-29;18!CL:0000789;1.40e-29;18!CL:0002419;1.40e-29;18!CL:0000625;2.17e-19;11!CL:0000542;7.74e-12;53!CL:0000624;2.71e-10;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,2.00e-30,25;CL:0000827,2.00e-30,25;CL:0000791,1.39e-29,18;CL:0000789,1.39e-29,18;CL:0002420,1.39e-29,18;CL:0002419,1.39e-29,18;CL:0000790,1.39e-29,18;CL:0000838,5.70e-23,52;CL:0000542,2.40e-22,53;CL:0000051,2.40e-22,53;CL:0000625,2.20e-19,11;CL:0000738,1.49e-14,136;CL:0002087,6.35e-14,115;CL:0000624,2.67e-10,6;CL:0002031,2.81e-10,120;CL:0000037,2.52e-09,168;CL:0000988,3.05e-08,177;CL:0002032,1.29e-07,161;CL:0000837,1.29e-07,161 | |||
|ontology_enrichment_development_v019=CL:0000790;1.40e-29;18!CL:0000051;7.74e-12;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.09e-35!115;UBERON:0002390!1.06e-11!102;UBERON:0003061!1.06e-11!102;UBERON:0002193!9.75e-11!112;UBERON:0000178!8.94e-10!15;UBERON:0000179!8.94e-10!15;UBERON:0000463!8.94e-10!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.01e-14;15!UBERON:0000179;1.01e-14;15!UBERON:0000463;1.01e-14;15!UBERON:0002390;2.09e-10;32!UBERON:0002193;5.28e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.37e-17,114;UBERON:0000178,1.03e-14,15;UBERON:0000179,1.03e-14,15;UBERON:0000463,1.03e-14,15;UBERON:0004177,5.24e-09,7;UBERON:0005057,5.24e-09,7;UBERON:0002370,3.15e-08,4;UBERON:0005058,3.15e-08,4;UBERON:0009113,3.15e-08,4;UBERON:0003295,3.15e-08,4;UBERON:0005562,3.15e-08,4;UBERON:0003408,1.57e-07,10 | |||
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| |||
|short_description=p1@THEMIS | |||
}} |
Revision as of 17:52, 13 September 2013
Short description: | p1@THEMIS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_THEMIS_5end |
Coexpression cluster: | NA |
Association with transcript: | 8bp_to_ENST00000368248, ENST00000543064, NM_001010923, NM_001164685, uc011ebt.1_5end |
EntrezGene: | THEMIS |
HGNC: | 21569 |
UniProt: | Q8N1K5F5H1J9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 2.00e-30 | 25 |
pro-T cell | 2.00e-30 | 25 |
mature alpha-beta T cell | 1.39e-29 | 18 |
alpha-beta T cell | 1.39e-29 | 18 |
immature T cell | 1.39e-29 | 18 |
mature T cell | 1.39e-29 | 18 |
immature alpha-beta T cell | 1.39e-29 | 18 |
lymphoid lineage restricted progenitor cell | 5.70e-23 | 52 |
lymphocyte | 2.40e-22 | 53 |
common lymphoid progenitor | 2.40e-22 | 53 |
CD8-positive, alpha-beta T cell | 2.20e-19 | 11 |
leukocyte | 1.49e-14 | 136 |
nongranular leukocyte | 6.35e-14 | 115 |
CD4-positive, alpha-beta T cell | 2.67e-10 | 6 |
hematopoietic lineage restricted progenitor cell | 2.81e-10 | 120 |
hematopoietic stem cell | 2.52e-09 | 168 |
hematopoietic cell | 3.05e-08 | 177 |
hematopoietic oligopotent progenitor cell | 1.29e-07 | 161 |
hematopoietic multipotent progenitor cell | 1.29e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.37e-17 | 114 |
blood | 1.03e-14 | 15 |
haemolymphatic fluid | 1.03e-14 | 15 |
organism substance | 1.03e-14 | 15 |
hemopoietic organ | 5.24e-09 | 7 |
immune organ | 5.24e-09 | 7 |
thymus | 3.15e-08 | 4 |
hemolymphoid system gland | 3.15e-08 | 4 |
thymic region | 3.15e-08 | 4 |
pharyngeal gland | 3.15e-08 | 4 |
thymus primordium | 3.15e-08 | 4 |
gland of gut | 1.57e-07 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.