Template:F5samples: Difference between revisions
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@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css"; | @import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css"; | ||
@import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css"; | @import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css"; | ||
.content, .sidebar | |||
{ | |||
display: inline-block; | |||
} | |||
</style> | </style> | ||
<script type="text/javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script> | <script type="text/javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script> | ||
<script type="text/javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script> | <script type="text/javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script> | ||
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== Details == | == Details == | ||
<div class="container"> | |||
<div class="content"> | |||
=== Transcriptome profiling === | === Transcriptome profiling === | ||
<table> | <table> | ||
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<tr><th scope="row" align="right"> [[Property:profile_cagescan|nanoCAGEscan]]:</th><td>{{#switch: {{{profile_cagescan}}}|,,,=NA| =NA |{{{profile_cagescan}}}}} | <tr><th scope="row" align="right"> [[Property:profile_cagescan|nanoCAGEscan]]:</th><td>{{#switch: {{{profile_cagescan}}}|,,,=NA| =NA |{{{profile_cagescan}}}}} | ||
</table> | </table> | ||
</div> | |||
<div class="content"> | |||
=== Sample info === | === Sample info === | ||
<table> | <table> | ||
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<tr><th scope="row" align="right"> [[Property:sample_note|Note]]:</th><td>{{#if:{{{sample_note}}}|[[sample_note::{{{sample_note}}}]]|NA}} </td> | <tr><th scope="row" align="right"> [[Property:sample_note|Note]]:</th><td>{{#if:{{{sample_note}}}|[[sample_note::{{{sample_note}}}]]|NA}} </td> | ||
</table> | </table> | ||
</div> | |||
<div class="content"> | |||
=== RNA info === | === RNA info === | ||
<table> | <table> | ||
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<tr><th scope="row" align="right"> [[Property:rna_concentration|concentration]]:</th><td>{{#if:{{{rna_concentration}}}|[[rna_concentration::{{{rna_concentration}}}]]|NA}}</td> | <tr><th scope="row" align="right"> [[Property:rna_concentration|concentration]]:</th><td>{{#if:{{{rna_concentration}}}|[[rna_concentration::{{{rna_concentration}}}]]|NA}}</td> | ||
</table> | </table> | ||
</div> | |||
== Parent ontology== | == Parent ontology== | ||
{{#if: {{{is_a}}} | | {{#if: {{{is_a}}} | | ||
Revision as of 14:35, 7 October 2013
| Name: | {{{name}}} |
|---|---|
| Species: | {{{sample_species}}} |
| Genomic View: | zenbu , UCSC |
Details
Transcriptome profiling
| hCAGE: | {{{profile_hcage}}} |
|---|---|
| RNA-seq: | {{{profile_rnaseq}}} |
| smallRNA seq: | {{{profile_srnaseq}}} |
| nanoCAGEscan: | {{{profile_cagescan}}} |
Sample info
| strain: | {{{sample_strain}}} |
|---|---|
| tissue: | {{{sample_tissue}}} |
| dev_stage: | {{{sample_dev_stage}}} |
| sex: | {{{sample_sex}}} |
| age: | {{{sample_age}}} |
| ethnicity: | {{{sample_ethnicity}}} |
| cell_type: | {{{sample_cell_type}}} |
| cell_line: | {{{sample_cell_line}}} |
| collaboration: | {{{sample_collaboration}}} |
| Experimental condition: | {{{sample_experimental_condition}}} |
| disease: | {{{sample_disease}}} |
| cell_lot; | {{{sample_cell_lot}}} |
| cell_catalog: | {{{sample_cell_catalog}}} |
| company: | {{{sample_company}}} |
| donor(cell lot): | {{{sample_donor(cell lot)}}} |
| Note: | {{{sample_note}}} |
RNA info
| sample_id: | {{{sample_id}}} |
|---|---|
| tube_id: | {{{rna_tube_id}}} |
| box: | {{{rna_box}}} |
| position: | {{{rna_position}}} |
| lot_number: | {{{rna_lot_number}}} |
| catalog_number: | {{{rna_catalog_number}}} |
| RIN: | {{{rna_rin}}} |
| OD260/230: | {{{rna_od260/230}}} |
| OD260/280: | {{{rna_od260/280}}} |
| sample_type: | {{{rna_sample_type}}} |
| extraction_protocol: | {{{rna_extraction_protocol}}} |
| weight_ug: | {{{rna_weight_ug}}} |
| concentration: | {{{rna_concentration}}} |
Parent ontology
is_a relathionship
{{{is_a}}}
part_of relathionship
{{{part_of}}}
has_quality relathionship
{{{has_quality}}}
Ancestors in ontology (non-development)
Connected ontology terms with is_a, part_of or located_in relathionship <br>Analyst: Hideya Kawaji
CL: Cell type
DOID: Disease
Property "Ancestors in disease facet" (as page type) with input value "{{{ancestors_in_disease_facet}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
UBERON: Anatomy
FF: FANTOM5
Ancestors in ontology (development)
Connected ontology terms with develops_from, derives_from or preceded_by relathionship <br>Analyst: Hideya Kawaji
De novo Motif
<b>Homer de novo Motifs</b><br>Analyst: Michael Rehli
Related Novel Motifs
The values shown are the p-values of novel motifs in FANTOM5 samples. <br>Analyst: Michiel de Hoon
CAGE Library ID:{{{profile_hcage}}}
This sample isn't target for the analysis
Related JASPAR Motifs
The values shown are the p-values of jaspar motifs in FANTOM5 samples. <br>Analyst: Michiel de Hoon
CAGE Library ID:{{{profile_hcage}}}
This sample isn't target for the analysis
Repeat Enrichment
<br>Analyst:
no result for this sample
Relative expression of the co-expression cluster
<br>Analyst:
