FFCP PHASE1:Hg19::chr19:13049990..13050022,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=811 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=1455 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-234bp_to_AF087986_5end | |||
|description=CAGE_peak_16_at_CALR_5end | |||
|id=chr19:13049990..13050022,+ | |||
|ontology_enrichment_celltype=CL:0000222!1.10e-12!119;CL:0000012!1.15e-12!682;CL:0000548!3.05e-12!679;CL:0000004!3.05e-12!679;CL:0000255!3.05e-12!679;CL:0000183!4.48e-11!59;CL:0000220!4.56e-11!246;CL:0002321!5.58e-11!248;CL:0000144!1.03e-10!625;CL:0000680!1.33e-10!57;CL:0000056!1.33e-10!57;CL:0000355!1.33e-10!57;CL:0000192!2.19e-10!42;CL:0000514!2.19e-10!42;CL:0000187!6.97e-10!54;CL:0000393!1.27e-09!60;CL:0000211!1.27e-09!60;CL:0000055!2.92e-09!180;CL:0002371!4.17e-09!591;CL:0000359!1.33e-08!32 | |||
|ontology_enrichment_celltype_v019=CL:0000359;9.28e-08;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,2.40e-12,121;CL:0000680,1.61e-10,58;CL:0000056,1.61e-10,58;CL:0000355,1.61e-10,58;CL:0002321,1.98e-10,250;CL:0000192,2.38e-10,43;CL:0000514,2.38e-10,43;CL:0000187,9.77e-10,55;CL:0000393,1.48e-09,61;CL:0000211,1.48e-09,61;CL:0000359,5.62e-09,32;CL:0000048,3.16e-07,427;CL:0000034,7.15e-07,441;CL:0000723,7.44e-07,433 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!2.47e-11!143;UBERON:0000486!2.11e-10!82;UBERON:0004290!3.83e-10!70;UBERON:0000914!8.04e-10!83;UBERON:0002329!8.04e-10!83;UBERON:0003077!8.04e-10!83;UBERON:0003059!8.04e-10!83;UBERON:0007282!8.04e-10!83;UBERON:0009618!8.04e-10!83;UBERON:0007285!8.04e-10!83;UBERON:0001637!2.45e-09!42;UBERON:0003509!2.45e-09!42;UBERON:0004572!2.45e-09!42;UBERON:0003914!3.41e-09!118;UBERON:0001134!4.70e-09!61;UBERON:0002036!4.70e-09!61;UBERON:0003082!4.70e-09!61;UBERON:0002049!2.51e-08!79;UBERON:0007798!2.51e-08!79;UBERON:0002385!4.48e-08!63;UBERON:0001015!4.48e-08!63;UBERON:0000383!4.48e-08!63;UBERON:0000490!1.08e-07!138;UBERON:0000055!1.21e-07!69;UBERON:0001981!3.04e-07!60;UBERON:0007500!3.04e-07!60;UBERON:0004537!3.04e-07!60;UBERON:0006965!3.04e-07!60;UBERON:0004872!4.52e-07!84;UBERON:0004573!7.70e-07!33;UBERON:0004571!7.70e-07!33;UBERON:0002100!7.71e-07!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,6.68e-13,78;UBERON:0005256,4.82e-12,122;UBERON:0000486,1.36e-10,83;UBERON:0007524,1.49e-10,73;UBERON:0002329,1.68e-10,71;UBERON:0003059,1.68e-10,71;UBERON:0007282,1.68e-10,71;UBERON:0004290,1.68e-10,71;UBERON:0009618,1.68e-10,71;UBERON:0003077,4.60e-10,72;UBERON:0007285,4.60e-10,72;UBERON:0001134,2.10e-09,62;UBERON:0002036,2.10e-09,62;UBERON:0003082,2.10e-09,62;UBERON:0001637,9.28e-09,42;UBERON:0003509,9.28e-09,42;UBERON:0004572,9.28e-09,42;UBERON:0003914,1.27e-08,117;UBERON:0002385,1.50e-08,64;UBERON:0001015,1.50e-08,64;UBERON:0000383,1.50e-08,64;UBERON:0003104,1.76e-08,160;UBERON:0009142,1.76e-08,160;UBERON:0000490,2.16e-08,148;UBERON:0002049,6.25e-07,78;UBERON:0007798,6.25e-07,78 | |||
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| |||
|short_description=p16@CALR | |||
}} |
Revision as of 21:33, 20 January 2014
Short description: | p16@CALR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_CALR_5end |
Coexpression cluster: | NA |
Association with transcript: | -234bp_to_AF087986_5end |
EntrezGene: | CALR |
HGNC: | 1455 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 2.40e-12 | 121 |
muscle precursor cell | 1.61e-10 | 58 |
myoblast | 1.61e-10 | 58 |
multi-potent skeletal muscle stem cell | 1.61e-10 | 58 |
embryonic cell | 1.98e-10 | 250 |
smooth muscle cell | 2.38e-10 | 43 |
smooth muscle myoblast | 2.38e-10 | 43 |
muscle cell | 9.77e-10 | 55 |
electrically responsive cell | 1.48e-09 | 61 |
electrically active cell | 1.48e-09 | 61 |
vascular associated smooth muscle cell | 5.62e-09 | 32 |
multi fate stem cell | 3.16e-07 | 427 |
stem cell | 7.15e-07 | 441 |
somatic stem cell | 7.44e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 6.68e-13 | 78 |
trunk mesenchyme | 4.82e-12 | 122 |
multilaminar epithelium | 1.36e-10 | 83 |
dense mesenchyme tissue | 1.49e-10 | 73 |
somite | 1.68e-10 | 71 |
presomitic mesoderm | 1.68e-10 | 71 |
presumptive segmental plate | 1.68e-10 | 71 |
dermomyotome | 1.68e-10 | 71 |
trunk paraxial mesoderm | 1.68e-10 | 71 |
paraxial mesoderm | 4.60e-10 | 72 |
presumptive paraxial mesoderm | 4.60e-10 | 72 |
skeletal muscle tissue | 2.10e-09 | 62 |
striated muscle tissue | 2.10e-09 | 62 |
myotome | 2.10e-09 | 62 |
artery | 9.28e-09 | 42 |
arterial blood vessel | 9.28e-09 | 42 |
arterial system | 9.28e-09 | 42 |
epithelial tube | 1.27e-08 | 117 |
muscle tissue | 1.50e-08 | 64 |
musculature | 1.50e-08 | 64 |
musculature of body | 1.50e-08 | 64 |
mesenchyme | 1.76e-08 | 160 |
entire embryonic mesenchyme | 1.76e-08 | 160 |
unilaminar epithelium | 2.16e-08 | 148 |
vasculature | 6.25e-07 | 78 |
vascular system | 6.25e-07 | 78 |