FFCP PHASE1:Hg19::chr19:3136220..3136277,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2769 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4383 | |||
|TSSclassifier=strong | |||
|UniProt=P30679,E9KL47 | |||
|association_with_transcript=29bp_to_ENST00000262958,NM_002068,uc002lxf.2,uc010xhf.1_5end | |||
|coexpression_cluster_id=C1188 | |||
|description=CAGE_peak_1_at_GNA15_5end | |||
|id=chr19:3136220..3136277,+ | |||
|ontology_enrichment_celltype=CL:0000037!1.63e-35!172;CL:0000566!1.63e-35!172;CL:0002032!7.15e-32!165;CL:0000837!7.15e-32!165;CL:0000988!1.20e-30!182;CL:0000763!2.76e-29!112;CL:0000049!2.76e-29!112;CL:0000738!6.77e-28!140;CL:0002031!5.26e-21!124;CL:0000766!1.68e-20!76;CL:0000557!1.54e-18!71;CL:0002087!1.58e-18!119;CL:0000839!4.68e-17!70;CL:0002057!6.33e-17!42;CL:0002009!1.01e-16!65;CL:0002194!2.26e-15!63;CL:0000576!2.26e-15!63;CL:0000040!2.26e-15!63;CL:0000559!2.26e-15!63;CL:0000860!2.84e-15!45;CL:0002076!7.69e-10!43;CL:0002368!1.44e-09!13;CL:0002159!3.63e-07!13;CL:0000451!8.74e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.57e-15;33!CL:0002057;2.57e-15;33!CL:0000473;2.15e-13;39!CL:0000234;2.15e-13;39!CL:0000576;2.89e-10;48!CL:0002368;5.11e-10;13!CL:0000766;1.62e-09;69!CL:0000763;1.37e-08;100!CL:0002076;1.86e-08;42!CL:0000451;9.64e-08;10!CL:0002159;1.20e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.59e-33,168;CL:0000763,7.76e-31,108;CL:0000049,7.76e-31,108;CL:0000988,8.51e-30,177;CL:0002032,1.52e-29,161;CL:0000837,1.52e-29,161;CL:0000738,1.16e-26,136;CL:0000766,1.41e-22,72;CL:0000557,2.88e-20,67;CL:0000473,2.52e-19,48;CL:0000234,2.52e-19,48;CL:0000860,5.15e-19,42;CL:0002057,5.15e-19,42;CL:0002031,5.34e-19,120;CL:0000839,1.60e-18,66;CL:0002009,3.99e-18,61;CL:0002194,1.54e-16,59;CL:0000576,1.54e-16,59;CL:0000040,1.54e-16,59;CL:0000559,1.54e-16,59;CL:0002087,2.01e-16,115;CL:0002076,8.22e-11,42;CL:0002368,5.19e-10,13;CL:0000451,8.84e-08,10;CL:0002159,1.21e-07,14 | |||
|ontology_enrichment_development_v019=CL:0002057;8.73e-14;42!CL:0000049;1.81e-08;108 | |||
|ontology_enrichment_disease=DOID:1240!1.70e-07!39;DOID:1749!2.26e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;9.61e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,9.40e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0002390!6.64e-16!102;UBERON:0003061!6.64e-16!102;UBERON:0002371!9.00e-16!80;UBERON:0002193!1.81e-13!112;UBERON:0001474!4.27e-13!86;UBERON:0004765!3.01e-10!101;UBERON:0001434!3.01e-10!101;UBERON:0002405!2.09e-08!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,9.54e-18,76;UBERON:0002405,5.71e-16,93;UBERON:0002390,6.56e-16,98;UBERON:0003061,6.56e-16,98;UBERON:0001474,4.25e-15,82;UBERON:0004765,6.05e-15,90;UBERON:0002193,6.84e-14,108;UBERON:0001434,1.27e-11,100;UBERON:0001004,2.00e-07,74;UBERON:0005631,9.41e-07,14;UBERON:0000158,9.41e-07,14 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,5.16041266653169,43.2636724142905,66.6246184997025,63.3040747748289,0,0,0,0,0,0,0,0,0,0,0,0,11.6148376736886,11.4940825229924,9.28787219501415,25.1753137183299,13.0501995353052,21.3646250176185,213.305724079111,284.940799164225,221.852406100073,0,0,34.3512514021771,29.9157520607214,18.0490002723128,15.1907609501096,0.895661896959697,0.971680998056939,1.28787783817093,8.14230137165562,6.04601509902095,7.5201058968223,14.6430293250581,9.45686142450199,14.865905802965,12.3707728698525,8.70946402198942,11.8241114944293,8.61864201841546,8.39130088658974,16.251178391321,21.0831420287717,12.0078706025452,18.2026022400519,23.8745436049304,15.7255223267286,20.4587880255693,10.5552416059749,7.77908264724364,10.2293940127847,13.6398342155434,9.64554881974938,11.8336227309159,8.79370328398601,7.30076085788282,7.38442071997397,8.47559303686716,9.57521853567668,9.17740923578565,2.95757400836718,4.25208599930087,1.67726916406701,3.25753030324836,3.75442232103766,1.76798145366788,3.70516566863623,1.79025009479181,0.730656615058536,0,0,0,0,0,0,0.661044872784862,0,0.569212969109448,1.76171156811282,0.764546456250458,117.632482435333,107.057135529473,12.9058201539788,1.37696839079683,6.6811829667358,9.25206745497792,1.17030546773475,0.32592226663359,0,0,15.2632325932688,5.89211814949674,8.4182879941776,1.89562704635511,10.3753968977797,15.0868843169459,3.61763390128087,4.69795030235942,2.31842468588042,0,0,0,4.07913633711238,3.44898444241729,4.46715679127419,1.51811815211702,0.637130828648193,0,0,0.602300476311091,0.383959833463255,4.99722906209383,0.236777252044017,0.821127996921047,2.62088766192152,4.27904313253612,0.434473211648397,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0.851363990735132,139.160800127751,125.325141661137,1.9472843619281,2.08955684759121,3.19099105245276,54.375862341618,96.6671399218416,65.747977735333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,54.0299711487859,65.9226449052153,109.023513035634,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,6.84566185853339,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,130.064554178899,112.644147804015,96.6531486460943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,64.8950756139536,0,0.171567810298526,150.577391580634,286.62447080693,137.724692203934,58.1455435595566,0,0,0,0,0,0,0,0,0,0,1.47730203652438,2.80805118167085,3.26988557035202,60.926992091405,73.9121364074982,60.2544163280143,82.4833994093233,68.0083416122671,98.5293485454593,1.47798971368783,1.49682337822484,7.87846839054934,4.32359860250884,5.17593977048158,0.063497894292169,0,0,6.84289784090821,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43247561282381,1.50677127429638,0,0,0,0,0,0,0,0,3.15249216323084,4.31255149719035,3.08023287071396,0,0,0,0,0,8.23907726341901,11.966458368161,9.94597232246485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.13536052245775,7.98142543028882,8.21802195086521,42.4378600024763,109.847390076928,33.5653225595945,0,0,0,0,0.511707249066704,0,0,0,0,0,0,0,0,103.461338676495,57.3664561070634,0,0,0.131124414959424,3.60959690325929,0.385076685522074,0,0,0.105551628892876,0,0,0,0,0,0,1.01950509218015,2.49322802678617,0,2.41185864310528,2.61435451024901,0.256450125116389,0,0,0.9273691048295,0,0,99.3479380733378,105.309759857916,0,0,0,0,0.137836572484531,0,0,0.170453254832202,0,95.0388263325624,118.965651699001,63.6787435347975,67.1687664880852,0.464845549297286,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.239293992399,0,0,0,0,0,0,0,0,0,147.797165146387,220.529448651274,226.493248511551,2.44773882019626,227.306836770409,222.382347881266,295.767912408963,187.684017969086,0.507447609232169,0.764637207142375,0.569647187174163,0.952927101831156,0.822724546172388,0,1.08006287447623,2.37937552888281,0,0,42.8820377966805,0,8.22334513965736,4.33965244425326,8.44959245462758,25.5461595434005,45.961288831768,20.5323375242166,2.921597462471,30.3260952362535,6.16233633389619,1.72347885350326,22.557102938106,23.3622653366213,10.9199891070516,18.1619736471943,1.27753871307098,0.687010689511529,0.614481528616916,0.447352215784832,0.333698283423817,0.781552381608161,8.63059139075251,3.69262196843137,0.540911356951966,11.3244469119259,0,0,0.879049075631364,0,43.4629198682166,0.852408440419239,45.3614521001611,21.0844923391173,31.9447130183201,0,0,0,0.494411622680279,0,2.39097585901284,0.828851746593443,0,0,16.4933639317833,0,16.3560399088135,0.179021174675609,1.53471711068062,12.0344954877059,0,0,0,0.0927680981618513,0,0,0,4.34999745260876,21.0517879328174,4.32231205497703,0,0.344743373241465,0.291604613383254,0,0,0,0,0,0,0.219385397153973,0,35.9713260238796,12.3889916191113,0,0,0,0,12.4410452295449,1.64875668123352,2.13213910407454,132.851287654457,22.4481766644885,3.32423363800313,0,0,0,0.37950746544837,9.6951313178031,0,0,0,0,0.995261931078505,0.176915129006678,0,0,0,0,0.202203398942031,0,0,0,11.1528832791291,0,1.57833761139756,0,0.30607276163049,0.505492637027904,0,0,9.30515421790059,9.92975867626497,9.41798755221676,11.94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| |||
|short_description=p1@GNA15 | |||
}} |
Revision as of 20:29, 20 January 2014
Short description: | p1@GNA15 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GNA15_5end |
Coexpression cluster: | C1188_Urothelial_Gingival_Keratinocyte_Mallassezderived_Bronchial_Tracheal_Prostate |
Association with transcript: | 29bp_to_ENST00000262958, NM_002068, uc002lxf.2, uc010xhf.1_5end |
EntrezGene: | GNA15 |
HGNC: | 4383 |
UniProt: | P30679E9KL47 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.59e-33 | 168 |
myeloid cell | 7.76e-31 | 108 |
common myeloid progenitor | 7.76e-31 | 108 |
hematopoietic cell | 8.51e-30 | 177 |
hematopoietic oligopotent progenitor cell | 1.52e-29 | 161 |
hematopoietic multipotent progenitor cell | 1.52e-29 | 161 |
leukocyte | 1.16e-26 | 136 |
myeloid leukocyte | 1.41e-22 | 72 |
granulocyte monocyte progenitor cell | 2.88e-20 | 67 |
defensive cell | 2.52e-19 | 48 |
phagocyte | 2.52e-19 | 48 |
classical monocyte | 5.15e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.15e-19 | 42 |
hematopoietic lineage restricted progenitor cell | 5.34e-19 | 120 |
myeloid lineage restricted progenitor cell | 1.60e-18 | 66 |
macrophage dendritic cell progenitor | 3.99e-18 | 61 |
monopoietic cell | 1.54e-16 | 59 |
monocyte | 1.54e-16 | 59 |
monoblast | 1.54e-16 | 59 |
promonocyte | 1.54e-16 | 59 |
nongranular leukocyte | 2.01e-16 | 115 |
endo-epithelial cell | 8.22e-11 | 42 |
respiratory epithelial cell | 5.19e-10 | 13 |
dendritic cell | 8.84e-08 | 10 |
general ecto-epithelial cell | 1.21e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 9.54e-18 | 76 |
immune system | 5.71e-16 | 93 |
hematopoietic system | 6.56e-16 | 98 |
blood island | 6.56e-16 | 98 |
bone element | 4.25e-15 | 82 |
skeletal element | 6.05e-15 | 90 |
hemolymphoid system | 6.84e-14 | 108 |
skeletal system | 1.27e-11 | 100 |
respiratory system | 2.00e-07 | 74 |
extraembryonic membrane | 9.41e-07 | 14 |
membranous layer | 9.41e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 9.40e-08 | 14 |