FFCP PHASE1:Hg19::chr22:38864041..38864150,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11015 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6306 | |||
|TSSclassifier=strong | |||
|UniProt=O43731 | |||
|association_with_transcript=0bp_to_ENST00000216014,ENST00000409006,NM_006855,NM_016657,uc003avu.2,uc003avv.2_5end | |||
|coexpression_cluster_id=C938 | |||
|description=CAGE_peak_1_at_KDELR3_5end | |||
|id=chr22:38864041..38864150,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.24e-45!180;CL:0000680!3.92e-24!57;CL:0000056!3.92e-24!57;CL:0000355!3.92e-24!57;CL:0000057!1.67e-23!75;CL:0000187!5.84e-23!54;CL:0000183!1.23e-22!59;CL:0000222!1.99e-21!119;CL:0000192!7.79e-21!42;CL:0000514!7.79e-21!42;CL:0000393!7.93e-19!60;CL:0000211!7.93e-19!60;CL:0000359!8.28e-18!32;CL:0000220!1.30e-14!246;CL:0002321!2.83e-14!248;CL:0000548!2.51e-13!679;CL:0000004!2.51e-13!679;CL:0000255!2.51e-13!679;CL:0000012!2.35e-12!682;CL:0002371!2.75e-11!591;CL:0000144!4.99e-10!625;CL:0002620!4.38e-09!23;CL:0002334!7.36e-08!12;CL:0000499!1.08e-07!27;CL:0002494!5.46e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0000359;6.58e-17;32!CL:0000192;3.55e-15;43!CL:0000187;5.80e-13;55!CL:0000057;3.36e-10;73!CL:0000134;3.53e-10;55!CL:0000393;7.88e-10;61!CL:0000211;7.88e-10;61!CL:0002620;3.32e-09;23!CL:0000723;3.69e-09;61!CL:0002320;9.25e-09;188!CL:0000048;1.03e-08;58!CL:0000499;2.93e-08;28!CL:0002334;6.06e-08;12!CL:0002494;4.54e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,1.50e-24,58;CL:0000056,1.50e-24,58;CL:0000355,1.50e-24,58;CL:0000057,1.86e-24,76;CL:0000187,2.33e-23,55;CL:0000222,4.00e-22,121;CL:0000192,3.56e-21,43;CL:0000514,3.56e-21,43;CL:0000393,5.38e-19,61;CL:0000211,5.38e-19,61;CL:0000359,5.05e-18,32;CL:0002321,9.64e-15,250;CL:0002620,3.48e-09,23;CL:0000499,2.77e-08,28;CL:0002334,6.07e-08,12;CL:0002494,4.62e-07,16 | |||
|ontology_enrichment_development_v019=CL:0000514;3.55e-15;43!CL:0000355;6.70e-13;58 | |||
|ontology_enrichment_disease=DOID:2394!1.29e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.09e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.07e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!2.56e-27!83;UBERON:0002329!2.56e-27!83;UBERON:0003077!2.56e-27!83;UBERON:0003059!2.56e-27!83;UBERON:0007282!2.56e-27!83;UBERON:0009618!2.56e-27!83;UBERON:0007285!2.56e-27!83;UBERON:0005256!7.36e-25!143;UBERON:0004290!1.38e-24!70;UBERON:0000486!4.34e-23!82;UBERON:0001134!2.20e-22!61;UBERON:0002036!2.20e-22!61;UBERON:0003082!2.20e-22!61;UBERON:0002385!1.21e-21!63;UBERON:0001015!1.21e-21!63;UBERON:0000383!1.21e-21!63;UBERON:0002100!6.24e-21!216;UBERON:0000490!1.84e-20!138;UBERON:0002049!2.48e-20!79;UBERON:0007798!2.48e-20!79;UBERON:0004872!3.77e-19!84;UBERON:0003104!1.08e-18!238;UBERON:0009142!1.08e-18!238;UBERON:0003914!3.42e-18!118;UBERON:0000055!2.43e-17!69;UBERON:0001637!3.24e-17!42;UBERON:0003509!3.24e-17!42;UBERON:0004572!3.24e-17!42;UBERON:0001981!8.34e-17!60;UBERON:0007500!8.34e-17!60;UBERON:0004537!8.34e-17!60;UBERON:0006965!8.34e-17!60;UBERON:0004535!1.70e-15!110;UBERON:0001009!3.99e-15!113;UBERON:0004573!3.62e-14!33;UBERON:0004571!3.62e-14!33;UBERON:0000475!5.26e-14!365;UBERON:0000481!7.54e-13!347;UBERON:0003102!1.76e-11!95;UBERON:0000926!1.40e-10!448;UBERON:0004120!1.40e-10!448;UBERON:0006603!1.40e-10!448;UBERON:0000468!1.19e-09!659;UBERON:0000119!1.65e-09!312;UBERON:0000483!4.29e-09!309;UBERON:0002199!5.53e-09!45;UBERON:0002416!5.53e-09!45;UBERON:0000477!7.63e-08!286;UBERON:0000947!1.55e-07!21;UBERON:0010191!1.55e-07!21;UBERON:0002097!1.96e-07!40;UBERON:0000467!2.35e-07!625;UBERON:0000480!2.41e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;7.31e-13;33!UBERON:0004571;7.31e-13;33!UBERON:0001637;2.58e-12;42!UBERON:0003509;2.58e-12;42!UBERON:0004572;2.58e-12;42!UBERON:0007500;8.01e-10;56!UBERON:0001981;8.01e-10;56!UBERON:0004537;8.01e-10;56!UBERON:0002049;6.32e-09;75!UBERON:0007798;6.32e-09;75!UBERON:0000055;1.79e-08;65!UBERON:0002384;2.84e-08;198!UBERON:0000947;1.29e-07;21!UBERON:0010191;1.29e-07;21!UBERON:0002385;1.60e-07;31!UBERON:0001015;1.60e-07;31!UBERON:0000383;1.60e-07;31!UBERON:0003914;3.20e-07;74 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,7.81e-25,71;UBERON:0003059,7.81e-25,71;UBERON:0007282,7.81e-25,71;UBERON:0004290,7.81e-25,71;UBERON:0009618,7.81e-25,71;UBERON:0007503,1.51e-24,78;UBERON:0007524,2.45e-24,73;UBERON:0003077,7.68e-24,72;UBERON:0007285,7.68e-24,72;UBERON:0000486,2.34e-23,83;UBERON:0003104,2.83e-23,160;UBERON:0009142,2.83e-23,160;UBERON:0000490,5.09e-23,148;UBERON:0001134,1.37e-22,62;UBERON:0002036,1.37e-22,62;UBERON:0003082,1.37e-22,62;UBERON:0005256,1.73e-22,122;UBERON:0002385,7.42e-22,64;UBERON:0001015,7.42e-22,64;UBERON:0000383,7.42e-22,64;UBERON:0002049,4.87e-20,78;UBERON:0007798,4.87e-20,78;UBERON:0004872,8.62e-19,83;UBERON:0002100,1.66e-18,199;UBERON:0003914,2.71e-18,117;UBERON:0001637,2.01e-17,42;UBERON:0003509,2.01e-17,42;UBERON:0004572,2.01e-17,42;UBERON:0000055,5.07e-17,68;UBERON:0007500,1.81e-16,59;UBERON:0001981,1.81e-16,59;UBERON:0004537,1.81e-16,59;UBERON:0006965,1.81e-16,59;UBERON:0004535,1.74e-15,109;UBERON:0001009,4.12e-15,112;UBERON:0004573,2.47e-14,33;UBERON:0004571,2.47e-14,33;UBERON:0003102,2.72e-12,99;UBERON:0002199,1.93e-09,46;UBERON:0002416,1.93e-09,46;UBERON:0000119,1.34e-08,309;UBERON:0000483,3.32e-08,306;UBERON:0002097,7.37e-08,41;UBERON:0000947,1.29e-07,21;UBERON:0010191,1.29e-07,21;UBERON:0000926,5.04e-07,315;UBERON:0004120,5.04e-07,315;UBERON:0006603,5.04e-07,315 | |||
|phase1_expression=116.092484353886,85.6402095563933,111.635888044009,109.079895204912,64.3623975975294,187.552782681579,101.319951267324,122.553655444805,17.4994370893892,46.9351818717882,10.4670175195864,39.7563297276914,55.6548324062037,66.8338305984252,63.9596935154877,77.3173918419542,84.3772339233568,86.9069007560974,100.514156550844,12.188984749602,20.4000691244253,10.9709152517331,12.3081474466354,9.99183303032055,28.7492644672098,0.458480434487708,0.328402357799783,0.944529375764151,0,0,1.08371286321253,4.59710612239464,8.13255980701275,4.80680213216824,0,0,0.293600439334847,1.66198622559563,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0.224723484445085,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,1.81619850790011,0,0,0,0,0.209658645508376,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0.574752439954483,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0.334372990781356,0,0,0,1.11410456885174,0,0,0,0.384273959177026,0,0.822189523018381,0.552700035571697,0.869409257205157,0,0,0,0.339928028092699,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.8187552945358,50.3025644777727,92.9560824602465,106.263110801062,81.71807943365,89.9496882746715,190.868627292264,164.969221032594,27.5096317947437,53.4367847884779,52.8765409872619,4.12584087817795,4.00724817121796,2.96627554227544,0.324547393654683,0.174129737299267,0.26591592103773,0.476981248610684,0,0,36.1747581407403,29.2479762336082,34.3669096591518,23.1776256188844,32.7209560243727,26.1362139843064,42.6349731735094,31.5268446186581,32.3747299044906,27.1123696339383,30.6150281002952,48.6574147659848,28.5552607331358,26.4717417849025,59.1403621953685,16.0739510911344,16.8397029469627,20.270066486998,38.3291593664708,21.833110170067,26.0146476381178,0,0,6.97750483428055,135.673342812822,108.522348496545,116.652488296446,119.610870852255,84.7657433454073,82.4196072209191,152.651063893478,126.293784789586,72.2009602127458,42.1644403578124,40.2116281659108,108.523275621416,97.9499071615998,14.7622502055292,90.2142622039626,70.7385058715117,96.3943989559117,36.5221290782109,28.4896382087911,39.3262258766296,114.122181731485,68.0502117907195,57.6557858960771,156.816377161231,91.2414969037875,96.4771043654308,56.0522150616666,79.9596541281814,56.1782154225119,100.574273920758,106.232584253163,139.451947088554,83.3821226931612,89.7248568795766,93.6413898295859,123.649728125951,153.014832637204,192.358392590102,127.269873609472,64.9254160914985,168.62187183642,159.324857635755,127.64247676117,64.1181786580051,100.426439418749,142.571822114192,179.27984422089,123.522072427087,120.727141725067,11.7889120429611,25.0926430943568,10.3249654340041,5.12289565744301,2.65059536642971,6.62305474356255,8.08556229119889,6.56034212276634,0,79.7892614882061,83.6213219650751,113.270635509034,78.0138119093725,144.375896333917,24.7261212083274,32.7054298751517,33.018511094037,30.4411364741407,26.3634127351811,29.6588273888871,26.2921050912321,34.3387563969356,28.8560367709793,17.7157309109916,26.6459370226547,97.9546146968732,107.316359311446,6.33775174109154,1.96565443335525,17.1329072937607,0,25.8275720940538,72.2300481356793,9.4385245451418,6.74410519545717,8.74602059981188,9.90696363196267,9.12263254868909,54.0766088345381,56.2892233898566,25.7365499044671,132.202189709535,28.7289231044537,30.5570438300563,20.7377025935712,13.4334747653077,15.4527509177077,0.492434012174795,0.468008530278475,0.297262324577456,54.3656237123306,46.0271031264875,29.6309953236588,7.7915914751478,6.1033127087932,9.20118429996507,1.47798971368783,1.40877494421162,0.621984346622316,1.00883967391873,1.13618190083742,23.8117103595634,23.3012939590549,18.7547915536075,10.2643467613623,27.1464580736774,38.1435683461775,13.7196687662678,37.9003065087319,54.49500860416,48.8432983567527,143.233061059618,25.0359512096318,134.403137656404,116.480895064173,84.2460238982065,99.2820464651868,86.5279705341997,63.1420564268156,105.946693300687,60.7736198038416,77.3845916573923,132.248890823256,116.213167238812,83.1549466580101,33.1583314765545,67.9796097708229,26.6927886456092,0,0,0,127.720047977014,58.5795872753981,45.6438096130299,238.310030774835,66.1633758612235,83.2633479065514,0.560425719967636,0.197030760201927,0,0.128343036279748,7.87693335089637,7.8083912314573,0.773288812777695,2.84777651068393,1.27587750330633,0,0,0,54.2296393398598,63.0214856535193,55.6093298584458,76.1173353202754,89.9282103537695,87.2094355137659,106.950111888347,189.596042828463,143.26672755527,71.3964191918284,157.421466852898,170.172742563992,97.570299047657,17.2305018567212,26.078900209625,0,0,0.106727557803444,18.7939094296681,84.8820741503535,37.79878666621,148.616576883447,116.170713779063,146.223909199631,118.528713061523,128.950226764809,209.914367092408,238.953086976435,123.984593817335,209.877959320116,129.514525033777,146.429749029781,115.629326567659,20.6669658801674,54.5377599224935,7.18231713699991,92.8848885651669,126.917544100682,121.158959422508,11.7311899355927,34.348840348569,7.0591479225917,8.76835347919564,29.2378012033266,25.0213444955973,23.47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| |||
|short_description=p1@KDELR3 | |||
}} |
Revision as of 15:58, 21 January 2014
Short description: | p1@KDELR3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_KDELR3_5end |
Coexpression cluster: | C938_leiomyoma_Smooth_Preadipocyte_hepatic_basal_Adipocyte_Ewing |
Association with transcript: | 0bp_to_ENST00000216014, ENST00000409006, NM_006855, NM_016657, uc003avu.2, uc003avv.2_5end |
EntrezGene: | KDELR3 |
HGNC: | 6306 |
UniProt: | O43731 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 1.50e-24 | 58 |
myoblast | 1.50e-24 | 58 |
multi-potent skeletal muscle stem cell | 1.50e-24 | 58 |
fibroblast | 1.86e-24 | 76 |
muscle cell | 2.33e-23 | 55 |
mesodermal cell | 4.00e-22 | 121 |
smooth muscle cell | 3.56e-21 | 43 |
smooth muscle myoblast | 3.56e-21 | 43 |
electrically responsive cell | 5.38e-19 | 61 |
electrically active cell | 5.38e-19 | 61 |
vascular associated smooth muscle cell | 5.05e-18 | 32 |
embryonic cell | 9.64e-15 | 250 |
skin fibroblast | 3.48e-09 | 23 |
stromal cell | 2.77e-08 | 28 |
preadipocyte | 6.07e-08 | 12 |
cardiocyte | 4.62e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.07e-07 | 14 |