FFCP PHASE1:Hg19::chr2:138722028..138722057,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3176 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5028 | |||
|TSSclassifier=strong | |||
|UniProt=Q9BRW6 | |||
|association_with_transcript=0bp_to_ENST00000280096,ENST00000467390,ENST00000475675_5end | |||
|description=CAGE_peak_1_at_HNMT_5end | |||
|id=chr2:138722028..138722057,+ | |||
|ontology_enrichment_celltype=CL:0002009!2.32e-31!65;CL:0002194!2.78e-30!63;CL:0000576!2.78e-30!63;CL:0000040!2.78e-30!63;CL:0000559!2.78e-30!63;CL:0000557!9.89e-26!71;CL:0000860!3.56e-23!45;CL:0000839!7.46e-23!70;CL:0002057!6.33e-22!42;CL:0000766!9.51e-21!76;CL:0000763!6.74e-12!112;CL:0000049!6.74e-12!112 | |||
|ontology_enrichment_celltype_v019=CL:0000473;3.90e-17;39!CL:0000234;3.90e-17;39!CL:0000576;8.95e-17;48!CL:0000860;2.44e-16;33!CL:0002057;2.44e-16;33!CL:0000766;5.08e-10;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,2.32e-31,61;CL:0002194,2.87e-30,59;CL:0000576,2.87e-30,59;CL:0000040,2.87e-30,59;CL:0000559,2.87e-30,59;CL:0000473,2.58e-26,48;CL:0000234,2.58e-26,48;CL:0000557,2.86e-25,67;CL:0000839,1.61e-22,66;CL:0000860,2.85e-22,42;CL:0002057,2.85e-22,42;CL:0000766,1.35e-20,72;CL:0000763,7.29e-12,108;CL:0000049,7.29e-12,108 | |||
|ontology_enrichment_development_v019=CL:0002057;2.89e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.15e-21!80;UBERON:0002405!1.03e-19!115;UBERON:0001474!2.91e-19!86;UBERON:0002390!2.26e-17!102;UBERON:0003061!2.26e-17!102;UBERON:0000062!4.58e-17!511;UBERON:0000922!5.43e-17!612;UBERON:0004765!7.74e-17!101;UBERON:0001434!7.74e-17!101;UBERON:0002050!1.06e-16!605;UBERON:0005423!1.06e-16!605;UBERON:0007023!1.18e-16!115;UBERON:0000468!1.46e-16!659;UBERON:0000923!2.49e-16!604;UBERON:0005291!2.49e-16!604;UBERON:0006598!2.49e-16!604;UBERON:0002532!2.49e-16!604;UBERON:0002193!6.04e-15!112;UBERON:0000467!2.51e-14!625;UBERON:0000480!5.22e-14!626;UBERON:0002204!2.15e-13!167;UBERON:0000926!1.49e-11!448;UBERON:0004120!1.49e-11!448;UBERON:0006603!1.49e-11!448;UBERON:0000479!3.13e-09!787;UBERON:0005743!4.37e-07!86;UBERON:0001017!5.48e-07!82;UBERON:0001049!5.90e-07!57;UBERON:0005068!5.90e-07!57;UBERON:0006241!5.90e-07!57;UBERON:0007135!5.90e-07!57 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.40e-21,76;UBERON:0001474,8.82e-19,82;UBERON:0002390,2.39e-17,98;UBERON:0003061,2.39e-17,98;UBERON:0004765,3.33e-17,90;UBERON:0007023,1.18e-16,114;UBERON:0001434,2.76e-16,100;UBERON:0002050,1.06e-15,564;UBERON:0000923,1.06e-15,560;UBERON:0010316,1.06e-15,560;UBERON:0005291,1.06e-15,560;UBERON:0006598,1.06e-15,560;UBERON:0010317,1.06e-15,560;UBERON:0002532,1.06e-15,560;UBERON:0002405,1.87e-15,93;UBERON:0005423,8.97e-15,581;UBERON:0002193,1.20e-14,108;UBERON:0000922,3.39e-14,592;UBERON:0002204,9.15e-13,167;UBERON:0000926,6.03e-10,315;UBERON:0004120,6.03e-10,315;UBERON:0006603,6.03e-10,315;UBERON:0000479,6.66e-08,773;UBERON:0011216,2.34e-07,223 | |||
|phase1_expression=51.233302954297,30.6163749164106,28.4727896273862,12.0087958023756,11.6209884551095,5.23403114460221,5.06599756336621,5.05375898741465,11.2309820125931,3.19454117451962,0.697801167972428,0.655324116390517,0,6.06455129504228,2.98257638155124,5.3786011716142,1.80808358407193,1.46062018077475,0,1.60057375499824,0.204000691244253,0.940364164434263,14.884271330815,5.06435372769671,3.26410862946487,0,0,0,15.3412067971073,18.039981710569,17.4942219347166,1.83884244895785,0.30120591877825,1.10926203050036,0,0,6.45920966536664,31.577738286317,19.0517225096635,15.8417935622572,172.414915164742,101.054823797922,132.90899289924,56.123720168912,31.74157926986,30.323007648477,39.5129362739664,24.6700732813095,26.6347478969789,33.6600099016916,33.044731142254,36.8912278626193,52.401343471966,29.0468107612722,36.5651513804723,40.8485876807452,26.471896555611,35.9557575112135,47.136919425119,33.3766188159137,24.9341479061626,34.6343865196052,34.5072127685423,22.1636870277001,49.9159890441165,21.5606385382633,19.9303119678584,32.6623264833766,28.1600775946909,30.8408159481266,43.5887641896025,33.5132648748684,33.5450130687338,54.292608582169,48.4737803920299,64.155545525563,65.7122492206996,66.5283635287873,54.0037971302189,37.9066949175861,29.8375015798635,40.916770443278,0,0.546138611262131,0,5.12076267079809,1.20118796110804,1.14950487990897,0.661044872784862,0.954053754535364,0.569212969109448,0,0.382273228125229,0,4.48406850385229,5.00429761072646,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.91139248594458,0,0,1.95747654801105,0.76791966692651,4.99722906209383,7.34009481336452,0,0,0,0,31.694892620815,24.8159318090345,14.0648818027883,6.86734389530676,5.51471701699479,13.6155727823174,3.9764297352555,6.32625331393427,6.52290238432068,3.99112915432615,1.93236528524877,18.9264764094195,0,0,37.6474976639433,33.9552987733571,33.1065321691974,1.90792499444274,1.71598473234038,0.74291500265913,2.58391129576717,4.30117297553062,3.12426451446835,1.69592382577203,1.25849830862972,0.275118041940067,1.25396979922086,1.8089173141853,0.35576626268671,1.00416183829401,2.01414658554573,0.760272105718513,1.95249646038536,1.83831540172934,4.0507097394088,15.2702535365776,6.51135180615892,10.5854791654323,1.53316637465883,0,1.09921046358244,0,0,0,9.44246708221105,2.78587125662075,3.97227542439656,0.860509862246441,3.90135220418193,4.48542080113846,1.06748995729705,2.4666754841716,23.963249725782,4.58016285036939,4.7403951902903,0.756787138224657,3.45705554687999,2.57753575017176,10.9256026890612,2.85235910772225,16.5888035412499,2.81842796745036,3.0755859429945,2.94946694074722,5.30800845262722,4.91337269247072,3.61640234115179,13.0680314301026,14.0942149688777,1.82032272387605,3.59309070908119,4.71341119071385,1.87677779807946,4.15596173226274,4.82875382968922,7.96868269077451,13.5214253015937,7.37309190540137,0.89694817844431,5.55249210928275,5.08636562782948,0,1.03052529238439,3.09168648054755,6.32797311527405,1.68776332241266,0.876933046450788,1.51460264546469,8.56064057373384,2.7479829659198,0.355009592516614,1.10827308050404,0.847802961552438,0.966304265816484,0.272746120590835,0.286804595389004,1.95157929807353,2.25300606146525,3.71820617182459,4.66474747569167,4.03713361401005,1.45990943630332,4.69348596989448,4.5026865673502,0,53.8666796517096,24.5439023767659,17.0361792057375,14.3296986566386,13.014595613708,18.0882115281126,16.9945966392077,13.7616959084436,18.6067205261027,17.4637103961558,13.4661504931237,2.21446636387394,1.40241773803446,1.6462960453256,0,65.912618107352,27.5191620669735,27.1763357073446,0,59.6493926934101,3.43135620597051,0.658501712451753,0,1.40740561376283,0.555530670951178,2.28065813717227,1.03993478527958,1.44331342025273,1.507095264676,2.81780866165972,1.29929802984966,0.462985512576611,1.33177906564219,5.53143078571493,6.00940313466411,183.431669535111,56.161023633417,87.0978611011948,2.81201501960331,4.87148171776693,0.850650583454319,0,0.581267877027924,3.83382679165211,0,0,0.207328115540772,0.144119953416961,0.6312121671319,32.1299345118375,9.54971063895694,5.86087236050235,6.84289784090821,20.4626710479614,39.3449405775532,43.1597913272173,1.90622843387113,3.92364061949952,9.90066858582825,6.72212921940444,10.7296933755565,14.370146793452,27.3916260082417,14.5610411675913,4.11531798819427,0,1.5985330740966,17.3003372326359,2.71310802695722,0.823240336780769,22.8015329005615,16.3480296421571,6.33561498346743,14.7705294759197,9.58686804460323,4.59875759437462,51.0819878693,88.8995051834864,90.6585939777036,1.4377491329495,0,5.70547620162874,12.8855362934145,14.3833425785268,16.6526695813103,0,0.985153801009636,0.215627574859517,0.77005821767849,41.671518372484,6.50699269288109,10.8260433788877,18.0917566561097,8.29320377149112,0,0,0,12.269149171914,12.0040925054323,4.6115054028955,16.8456397839954,6.60187258549499,17.8203728988346,13.3541213091693,5.71797589482666,6.82222512167955,4.1389228517002,3.32112799267718,3.13427586520895,11.0342190374465,0.9790057873137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| |||
|short_description=p1@HNMT | |||
}} |
Revision as of 05:37, 21 January 2014
Short description: | p1@HNMT |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HNMT_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000280096, ENST00000467390, ENST00000475675_5end |
EntrezGene: | HNMT |
HGNC: | 5028 |
UniProt: | Q9BRW6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage dendritic cell progenitor | 2.32e-31 | 61 |
monopoietic cell | 2.87e-30 | 59 |
monocyte | 2.87e-30 | 59 |
monoblast | 2.87e-30 | 59 |
promonocyte | 2.87e-30 | 59 |
defensive cell | 2.58e-26 | 48 |
phagocyte | 2.58e-26 | 48 |
granulocyte monocyte progenitor cell | 2.86e-25 | 67 |
myeloid lineage restricted progenitor cell | 1.61e-22 | 66 |
classical monocyte | 2.85e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.85e-22 | 42 |
myeloid leukocyte | 1.35e-20 | 72 |
myeloid cell | 7.29e-12 | 108 |
common myeloid progenitor | 7.29e-12 | 108 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.40e-21 | 76 |
bone element | 8.82e-19 | 82 |
hematopoietic system | 2.39e-17 | 98 |
blood island | 2.39e-17 | 98 |
skeletal element | 3.33e-17 | 90 |
adult organism | 1.18e-16 | 114 |
skeletal system | 2.76e-16 | 100 |
embryonic structure | 1.06e-15 | 564 |
germ layer | 1.06e-15 | 560 |
germ layer / neural crest | 1.06e-15 | 560 |
embryonic tissue | 1.06e-15 | 560 |
presumptive structure | 1.06e-15 | 560 |
germ layer / neural crest derived structure | 1.06e-15 | 560 |
epiblast (generic) | 1.06e-15 | 560 |
immune system | 1.87e-15 | 93 |
developing anatomical structure | 8.97e-15 | 581 |
hemolymphoid system | 1.20e-14 | 108 |
embryo | 3.39e-14 | 592 |
musculoskeletal system | 9.15e-13 | 167 |
mesoderm | 6.03e-10 | 315 |
mesoderm-derived structure | 6.03e-10 | 315 |
presumptive mesoderm | 6.03e-10 | 315 |
tissue | 6.66e-08 | 773 |
organ system subdivision | 2.34e-07 | 223 |