FFCP PHASE1:Hg19::chr3:48514524..48514576,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51246 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30376 | |||
|TSSclassifier=strong | |||
|UniProt=F5H0T2 | |||
|association_with_transcript=0bp_to_ENST00000460758,ENST00000536074_5end | |||
|coexpression_cluster_id=C83 | |||
|description=CAGE_peak_2_at_SHISA5_5end | |||
|id=chr3:48514524..48514576,- | |||
|ontology_enrichment_celltype=CL:0002321!5.05e-16!248;CL:0000220!2.63e-15!246;CL:0000066!3.56e-13!254;CL:0000055!1.75e-08!180;CL:0000192!2.03e-07!42;CL:0000514!2.03e-07!42;CL:0000223!6.71e-07!59 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,4.03e-16,250;CL:0000066,3.22e-13,253;CL:0000192,2.88e-07,43;CL:0000514,2.88e-07,43;CL:0000223,7.78e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000481!4.95e-19!347;UBERON:0000475!2.19e-18!365;UBERON:0000119!4.62e-15!312;UBERON:0002100!6.27e-15!216;UBERON:0000483!1.82e-14!309;UBERON:0003104!2.53e-14!238;UBERON:0009142!2.53e-14!238;UBERON:0005256!2.72e-12!143;UBERON:0005177!1.12e-10!107;UBERON:0004119!2.31e-10!169;UBERON:0000925!2.31e-10!169;UBERON:0006595!2.31e-10!169;UBERON:0000064!2.67e-10!219;UBERON:0000922!4.31e-09!612;UBERON:0009569!8.29e-09!113;UBERON:0006554!3.63e-08!44;UBERON:0001008!6.63e-08!45;UBERON:0005172!8.78e-08!55;UBERON:0005173!8.78e-08!55;UBERON:0002050!1.02e-07!605;UBERON:0005423!1.02e-07!605;UBERON:0000923!1.06e-07!604;UBERON:0005291!1.06e-07!604;UBERON:0006598!1.06e-07!604;UBERON:0002532!1.06e-07!604;UBERON:0002417!2.14e-07!61;UBERON:0000916!2.14e-07!61;UBERON:0000025!2.16e-07!194;UBERON:0000468!2.26e-07!659;UBERON:0001007!2.43e-07!155;UBERON:0001555!2.43e-07!155;UBERON:0007026!2.43e-07!155;UBERON:0000466!2.61e-07!126;UBERON:0000077!2.63e-07!130;UBERON:0003914!4.03e-07!118;UBERON:0004121!7.32e-07!169;UBERON:0000490!8.04e-07!138;UBERON:0004111!9.61e-07!241 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;2.49e-08;30!UBERON:0001008;2.49e-08;30!UBERON:0002113;6.19e-07;24!UBERON:0011143;6.19e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,1.75e-14,199;UBERON:0000119,1.76e-14,309;UBERON:0000483,6.76e-14,306;UBERON:0003104,5.38e-12,160;UBERON:0009142,5.38e-12,160;UBERON:0005177,9.81e-12,101;UBERON:0006554,5.58e-10,47;UBERON:0001008,1.11e-09,48;UBERON:0005256,3.13e-09,122;UBERON:0009569,9.86e-09,112;UBERON:0004119,2.06e-08,160;UBERON:0000925,2.06e-08,160;UBERON:0006595,2.06e-08,160;UBERON:0005172,6.52e-08,54;UBERON:0005173,6.52e-08,54;UBERON:0000490,9.25e-08,148;UBERON:0002417,1.66e-07,60;UBERON:0000916,1.66e-07,60;UBERON:0000025,2.51e-07,192;UBERON:0003914,3.55e-07,117;UBERON:0000922,4.65e-07,592;UBERON:0011216,6.74e-07,223 | |||
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| |||
|short_description=p2@SHISA5 | |||
}} |
Revision as of 18:48, 21 January 2014
Short description: | p2@SHISA5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SHISA5_5end |
Coexpression cluster: | C83_choriocarcinoma_pancreatic_placenta_chorionic_HES3GFP_testicular_amniotic |
Association with transcript: | 0bp_to_ENST00000460758, ENST00000536074_5end |
EntrezGene: | SHISA5 |
HGNC: | 30376 |
UniProt: | F5H0T2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 4.03e-16 | 250 |
epithelial cell | 3.22e-13 | 253 |
smooth muscle cell | 2.88e-07 | 43 |
smooth muscle myoblast | 2.88e-07 | 43 |
endodermal cell | 7.78e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
trunk | 1.75e-14 | 199 |
cell layer | 1.76e-14 | 309 |
epithelium | 6.76e-14 | 306 |
mesenchyme | 5.38e-12 | 160 |
entire embryonic mesenchyme | 5.38e-12 | 160 |
trunk region element | 9.81e-12 | 101 |
urinary system structure | 5.58e-10 | 47 |
renal system | 1.11e-09 | 48 |
trunk mesenchyme | 3.13e-09 | 122 |
subdivision of trunk | 9.86e-09 | 112 |
endoderm-derived structure | 2.06e-08 | 160 |
endoderm | 2.06e-08 | 160 |
presumptive endoderm | 2.06e-08 | 160 |
abdomen element | 6.52e-08 | 54 |
abdominal segment element | 6.52e-08 | 54 |
unilaminar epithelium | 9.25e-08 | 148 |
abdominal segment of trunk | 1.66e-07 | 60 |
abdomen | 1.66e-07 | 60 |
tube | 2.51e-07 | 192 |
epithelial tube | 3.55e-07 | 117 |
embryo | 4.65e-07 | 592 |
organ system subdivision | 6.74e-07 | 223 |