CL:0002363: Difference between revisions
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|located_in= | |located_in= | ||
|name=keratocyte | |name=keratocyte | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date=2010-09-22T01:57:40Z | |obo_creation_date=2010-09-22T01:57:40Z | ||
|part_of=UBERON:0001777 | |part_of=UBERON:0001777 | ||
Latest revision as of 16:42, 12 September 2014
| Name: | keratocyte |
|---|---|
| Namespace: | FANTOM |
| Definition: | "A keratocyte is a specialized fibroblast��residing in the cornea stroma that has a flattened, dendritic cell located between the lamellae with a large flattened nucleus and lengthy processes which communicate with neighboring cells. This��corneal��layer, representing about 85-90% of corneal thickness, is built up from highly regular collagenous lamellae and extracellular matrix components. Keratocytes play the major role in keeping it transparent, healing its wounds, and synthesizing its components. This cell type secretes collagen I, V, VI, and keratin sulfate." [GOC:tfm, ISBN:978-0-7020-2958-5] |
| Synonyms: |
"corneal fibroblast" EXACT [] "corneal keratocyte" EXACT [] |
| Created by: | tmeehan |
| Creation date: | 2010-09-22T01:57:40Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000005(fibroblast neural crest derived) |
|---|---|
| develops_from: | CL:0000008(migratory cranial neural crest cell) |
| part_of: | UBERON:0001777(substantia propria of cornea) |
Children
| derives from: | FF:0000084 (human keratocyte sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11527-119I6 (Keratocytes, donor1)
- 11607-120I5 (Keratocytes, donor2)
- 11688-122I5 (Keratocytes, donor3)
Mouse (Mus musculus)
- 11527-119I6 (Keratocytes, donor1)
- 11607-120I5 (Keratocytes, donor2)
- 11688-122I5 (Keratocytes, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002363 (keratocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:52362029..52362031,+#_035824bd2694378c46a5ce0c38de80bb | p@chr3:52362029..52362031, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:150910973..150910976,-#_035824bd2694378c46a5ce0c38de80bb | p@chr7:150910973..150910976, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:150910973..150910976,-#_035824bd2694378c46a5ce0c38de80bb | p@chr7:150910973..150910976, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:52362029..52362031,+#_035824bd2694378c46a5ce0c38de80bb | p@chr3:52362029..52362031, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr6:113369869..113369877,+#_2b478c4e21db8bcd992c5e5708589089 | p@chr6:113369869..113369877, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr10:92617531..92617541,-#_2b478c4e21db8bcd992c5e5708589089 | p8@HTR7 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr6:113369869..113369877,+#_2b478c4e21db8bcd992c5e5708589089 | p@chr6:113369869..113369877, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr10:92617531..92617541,-#_2b478c4e21db8bcd992c5e5708589089 | p8@HTR7 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr15:49255230..49255248,-#_2b478c4e21db8bcd992c5e5708589089 | p16@SHC4 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr8:22932230..22932233,-#_2b478c4e21db8bcd992c5e5708589089 | p5@ENST00000520840, p5@ENST00000523806 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr8:22932230..22932233,-#_2b478c4e21db8bcd992c5e5708589089 | p5@ENST00000520840, p5@ENST00000523806 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr15:49255230..49255248,-#_2b478c4e21db8bcd992c5e5708589089 | p16@SHC4 |
| 5.04e-34 | FFCP PHASE2:Hg19::chr6:151770193..151770196,-#_cb5da6128a0d02db408a1e23e7bb4ba1 | p@chr6:151770193..151770196, - |
| 5.04e-34 | FFCP PHASE1:Hg19::chr6:151770193..151770196,-#_cb5da6128a0d02db408a1e23e7bb4ba1 | p@chr6:151770193..151770196, - |
| 5.04e-34 | FFCP PHASE2:Hg19::chr21:47410794..47410799,+#_cb5da6128a0d02db408a1e23e7bb4ba1 | p@chr21:47410794..47410799, + |
| 5.04e-34 | FFCP PHASE1:Hg19::chr1:44820685..44820695,-#_cb5da6128a0d02db408a1e23e7bb4ba1 | p10@ERI3 |
| 5.04e-34 | FFCP PHASE1:Hg19::chr21:47410794..47410799,+#_cb5da6128a0d02db408a1e23e7bb4ba1 | p@chr21:47410794..47410799, + |
| 5.04e-34 | FFCP PHASE2:Hg19::chr1:44820685..44820695,-#_cb5da6128a0d02db408a1e23e7bb4ba1 | p10@ERI3 |
| 7.05e-34 | FFCP PHASE2:Hg19::chr10:74020629..74020634,-#_849e78bb631ed5fcacef1ae36c3734ef | p@chr10:74020629..74020634, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chr15:101459410..101459421,-#_849e78bb631ed5fcacef1ae36c3734ef | p2@ENST00000560068 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr10:43133595..43133606,-#_849e78bb631ed5fcacef1ae36c3734ef | p@chr10:43133595..43133606, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chr10:74020629..74020634,-#_849e78bb631ed5fcacef1ae36c3734ef | p@chr10:74020629..74020634, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr5:79375654..79375674,+#_849e78bb631ed5fcacef1ae36c3734ef | p@chr5:79375654..79375674, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr2:25383828..25383855,-#_849e78bb631ed5fcacef1ae36c3734ef | p4@POMC |
| 7.05e-34 | FFCP PHASE1:Hg19::chr1:9970194..9970195,-#_849e78bb631ed5fcacef1ae36c3734ef | p14@CTNNBIP1 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr5:79375654..79375674,+#_849e78bb631ed5fcacef1ae36c3734ef | p@chr5:79375654..79375674, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr15:101459410..101459421,-#_849e78bb631ed5fcacef1ae36c3734ef | p2@ENST00000560068 |
| 7.05e-34 | FFCP PHASE2:Hg19::chr11:65265332..65265342,+#_849e78bb631ed5fcacef1ae36c3734ef | p19@MALAT1 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr11:65265332..65265342,+#_849e78bb631ed5fcacef1ae36c3734ef | p19@MALAT1 |
| 7.05e-34 | FFCP PHASE2:Hg19::chr2:25383828..25383855,-#_849e78bb631ed5fcacef1ae36c3734ef | p4@POMC |
| 7.05e-34 | FFCP PHASE2:Hg19::chr1:9970194..9970195,-#_849e78bb631ed5fcacef1ae36c3734ef | p14@CTNNBIP1 |
| 7.05e-34 | FFCP PHASE2:Hg19::chr10:43133595..43133606,-#_849e78bb631ed5fcacef1ae36c3734ef | p@chr10:43133595..43133606, - |
| 6.41e-31 | FFCP PHASE2:Hg19::chr4:111536534..111536575,-#_65e4aab2358affaaf70e749e709b6953 | p1@ENST00000503456 |
| 6.41e-31 | FFCP PHASE1:Hg19::chr4:111536534..111536575,-#_65e4aab2358affaaf70e749e709b6953 | p1@ENST00000503456 |
| 4.55e-29 | FFCP PHASE2:Hg19::chrX:19688475..19688492,-#_566bfb279bad29014d99514b09d24f57 | p26@SH3KBP1 |
| 4.55e-29 | FFCP PHASE1:Hg19::chrX:19688475..19688492,-#_566bfb279bad29014d99514b09d24f57 | p26@SH3KBP1 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr1:36024782..36024791,+#_c15cd95a59a7342a014d77681eb34b78 | p4@AB383919 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr4:57522753..57522760,-#_c15cd95a59a7342a014d77681eb34b78 | p18@HOPX |
| 9.18e-26 | FFCP PHASE1:Hg19::chr15:90344775..90344794,+#_c15cd95a59a7342a014d77681eb34b78 | p@chr15:90344775..90344794, + |
| 9.18e-26 | FFCP PHASE1:Hg19::chr21:47681190..47681194,-#_c15cd95a59a7342a014d77681eb34b78 | p@chr21:47681190..47681194, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr4:73434498..73434509,-#_c15cd95a59a7342a014d77681eb34b78 | p6@ADAMTS3 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr10:86153606..86153623,+#_c15cd95a59a7342a014d77681eb34b78 | p9@FAM190B |
| 9.18e-26 | FFCP PHASE2:Hg19::chr17:30185971..30185986,-#_c15cd95a59a7342a014d77681eb34b78 | p7@C17orf79 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr12:53693440..53693450,-#_c15cd95a59a7342a014d77681eb34b78 | p2@CU687581 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr1:93646042..93646043,-#_c15cd95a59a7342a014d77681eb34b78 | p7@TMED5 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr11:34073641..34073656,-#_c15cd95a59a7342a014d77681eb34b78 | p@chr11:34073641..34073656, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr20:60758060..60758074,-#_c15cd95a59a7342a014d77681eb34b78 | p@chr20:60758060..60758074, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr1:151171326..151171337,-#_c15cd95a59a7342a014d77681eb34b78 | p@chr1:151171326..151171337, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr12:53693440..53693450,-#_c15cd95a59a7342a014d77681eb34b78 | p2@CU687581 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr2:219540880..219540912,+#_c15cd95a59a7342a014d77681eb34b78 | p@chr2:219540880..219540912, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr7:6049190..6049209,+#_c15cd95a59a7342a014d77681eb34b78 | p@chr7:6049190..6049209, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr4:120546882..120546885,-#_c15cd95a59a7342a014d77681eb34b78 | p@chr4:120546882..120546885, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr1:179335101..179335112,+#_c15cd95a59a7342a014d77681eb34b78 | p6@AXDND1 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr4:73434498..73434509,-#_c15cd95a59a7342a014d77681eb34b78 | p6@ADAMTS3 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr3:9956047..9956079,+#_c15cd95a59a7342a014d77681eb34b78 | p@chr3:9956047..9956079, + |
| 9.18e-26 | FFCP PHASE1:Hg19::chr10:86153606..86153623,+#_c15cd95a59a7342a014d77681eb34b78 | p9@FAM190B |
| 9.18e-26 | FFCP PHASE1:Hg19::chr21:47397571..47397582,-#_c15cd95a59a7342a014d77681eb34b78 | p@chr21:47397571..47397582, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr1:36024782..36024791,+#_c15cd95a59a7342a014d77681eb34b78 | p4@AB383919 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr11:34073641..34073656,-#_c15cd95a59a7342a014d77681eb34b78 | p@chr11:34073641..34073656, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr17:30185971..30185986,-#_c15cd95a59a7342a014d77681eb34b78 | p7@C17orf79 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr7:6049190..6049209,+#_c15cd95a59a7342a014d77681eb34b78 | p@chr7:6049190..6049209, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr21:47681190..47681194,-#_c15cd95a59a7342a014d77681eb34b78 | p@chr21:47681190..47681194, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr16:10590513..10590515,-#_c15cd95a59a7342a014d77681eb34b78 | p@chr16:10590513..10590515, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr4:57522753..57522760,-#_c15cd95a59a7342a014d77681eb34b78 | p18@HOPX |
| 9.18e-26 | FFCP PHASE2:Hg19::chr15:90344775..90344794,+#_c15cd95a59a7342a014d77681eb34b78 | p@chr15:90344775..90344794, + |
| 9.18e-26 | FFCP PHASE1:Hg19::chr1:93646042..93646043,-#_c15cd95a59a7342a014d77681eb34b78 | p7@TMED5 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr7:100806199..100806216,-#_c15cd95a59a7342a014d77681eb34b78 | p@chr7:100806199..100806216, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr20:60758060..60758074,-#_c15cd95a59a7342a014d77681eb34b78 | p@chr20:60758060..60758074, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr2:219540880..219540912,+#_c15cd95a59a7342a014d77681eb34b78 | p@chr2:219540880..219540912, + |
| 9.18e-26 | FFCP PHASE1:Hg19::chr7:100806199..100806216,-#_c15cd95a59a7342a014d77681eb34b78 | p@chr7:100806199..100806216, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr4:120546882..120546885,-#_c15cd95a59a7342a014d77681eb34b78 | p@chr4:120546882..120546885, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr16:10590513..10590515,-#_c15cd95a59a7342a014d77681eb34b78 | p@chr16:10590513..10590515, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr1:179335101..179335112,+#_c15cd95a59a7342a014d77681eb34b78 | p6@AXDND1 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr3:9956047..9956079,+#_c15cd95a59a7342a014d77681eb34b78 | p@chr3:9956047..9956079, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr21:47397571..47397582,-#_c15cd95a59a7342a014d77681eb34b78 | p@chr21:47397571..47397582, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr1:151171326..151171337,-#_c15cd95a59a7342a014d77681eb34b78 | p@chr1:151171326..151171337, - |
| 6.02e-24 | FFCP PHASE2:Hg19::chr1:145589059..145589070,-#_061749fec89f93fe1c4fd73b406882fc | p3@NUDT17 |
| 6.02e-24 | FFCP PHASE1:Hg19::chr1:145589059..145589070,-#_061749fec89f93fe1c4fd73b406882fc | p3@NUDT17 |
| 3.81e-21 | FFCP PHASE2:Hg19::chr17:19648416..19648426,-#_0fda23e8ca08f545ec9aa2300952f67c | p13@ALDH3A1 |
| 3.81e-21 | FFCP PHASE1:Hg19::chr17:19648416..19648426,-#_0fda23e8ca08f545ec9aa2300952f67c | p13@ALDH3A1 |
| 4.66e-21 | FFCP PHASE1:Hg19::chr4:52917466..52917498,-#_bc618231684c1951909736cbe31c729a | p@chr4:52917466..52917498, - |
| 4.66e-21 | FFCP PHASE2:Hg19::chr6:41562324..41562340,+#_bc618231684c1951909736cbe31c729a | p16@FOXP4 |
| 4.66e-21 | FFCP PHASE1:Hg19::chr6:41562324..41562340,+#_bc618231684c1951909736cbe31c729a | p16@FOXP4 |
| 4.66e-21 | FFCP PHASE2:Hg19::chr4:52917466..52917498,-#_bc618231684c1951909736cbe31c729a | p@chr4:52917466..52917498, - |
| 5.7e-21 | FFCP PHASE2:Hg19::chr19:48244695..48244702,+#_3c9ea83d80a3b014892f838dfe9b74c7 | p14@EHD2 |
| 5.7e-21 | FFCP PHASE1:Hg19::chr8:27686258..27686262,-#_3c9ea83d80a3b014892f838dfe9b74c7 | p@chr8:27686258..27686262, - |
| 5.7e-21 | FFCP PHASE2:Hg19::chr12:58141331..58141342,+#_3c9ea83d80a3b014892f838dfe9b74c7 | p@chr12:58141331..58141342, + |
| 5.7e-21 | FFCP PHASE2:Hg19::chr5:142254452..142254462,+#_3c9ea83d80a3b014892f838dfe9b74c7 | p29@ARHGAP26 |
| 5.7e-21 | FFCP PHASE1:Hg19::chr12:58141331..58141342,+#_3c9ea83d80a3b014892f838dfe9b74c7 | p@chr12:58141331..58141342, + |
| 5.7e-21 | FFCP PHASE2:Hg19::chr7:73118172..73118185,-#_3c9ea83d80a3b014892f838dfe9b74c7 | p3@STX1A |
| 5.7e-21 | FFCP PHASE1:Hg19::chr5:142254452..142254462,+#_3c9ea83d80a3b014892f838dfe9b74c7 | p29@ARHGAP26 |
| 5.7e-21 | FFCP PHASE1:Hg19::chr19:48244695..48244702,+#_3c9ea83d80a3b014892f838dfe9b74c7 | p14@EHD2 |
| 5.7e-21 | FFCP PHASE1:Hg19::chr7:73118172..73118185,-#_3c9ea83d80a3b014892f838dfe9b74c7 | p3@STX1A |
| 5.7e-21 | FFCP PHASE2:Hg19::chr8:27686258..27686262,-#_3c9ea83d80a3b014892f838dfe9b74c7 | p@chr8:27686258..27686262, - |
| 6.96e-21 | FFCP PHASE1:Hg19::chr6:50786414..50786426,+#_f689d9c097231b92c4c946a0fe88fc97 | p7@TFAP2B |
| 6.96e-21 | FFCP PHASE1:Hg19::chr17:53803029..53803034,-#_f689d9c097231b92c4c946a0fe88fc97 | p@chr17:53803029..53803034, - |
| 6.96e-21 | FFCP PHASE2:Hg19::chr5:6766044..6766055,+#_f689d9c097231b92c4c946a0fe88fc97 | p2@ENST00000506093 |
| 6.96e-21 | FFCP PHASE2:Hg19::chr4:111563076..111563124,-#_f689d9c097231b92c4c946a0fe88fc97 | p8@PITX2 |
| 6.96e-21 | FFCP PHASE2:Hg19::chr15:90348577..90348582,-#_f689d9c097231b92c4c946a0fe88fc97 | p34@ANPEP |
| 6.96e-21 | FFCP PHASE2:Hg19::chr12:102455905..102455915,-#_f689d9c097231b92c4c946a0fe88fc97 | p5@CCDC53 |
