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UBERON:0000970: Difference between revisions

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|located_in=
|located_in=
|name=eye
|name=eye
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0002104
|part_of=UBERON:0002104

Latest revision as of 17:12, 12 September 2014

Name:eye
Namespace:FANTOM
Definition:"An organ that detects light." UBERON:cjm, Wikipedia:Eye
Xrefs:
links:

BILA:0000017
BTO:0000439
EFO:0000827
EV:0100336
FBbt:00005162
GAID:69
MAT:0000140
MESH:A.01.456.505.420
MIAA:0000140

OpenCyc:Mx4rvViTvpwpEbGdrcN5Y29ycA
Synonyms: "light-detecting organ" RELATED []
"photoreceptor" BROAD []
"visual apparatus" RELATED [EV:0100336]
Comments:Usage notes: This class encompasses a variety of light-detecting structures from different phyla with no implication of homology, from the compound insect eye to the vertebrate camera-type eye (distinct classes are provided for each). Structure notes: Note that whilst this is classified as an organ, it is in fact more of a unit composed of different structures: in Drosophila, it includes the interommatidial bristle as a part; we consider here the vertebrate eye to include the eyeball/eye proper as a part, with the eye having as parts (when present): eyelids, conjuctiva,
Alt_id: UBERON:FBbt_00004508-FMA_54448-MA_0000261-MIAA_0000140-XAO_0000179-ZFA_0000107
Subset: functional_classification
major_organ
organ_slim
uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000020(sense organ)
part_of:UBERON:0002104(visual system)



Children

is a:UBERON:0000047 (simple eye)
part of:UBERON:0005388 (photoreceptor array),UBERON:0005389 (transparent eye structure),UBERON:0007625 (pigment epithelium of eye),FF:0010054 (human eye - fetal sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000970 (eye), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data