UBERON:0010363: Difference between revisions
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|located_in= | |located_in= | ||
|name=endochondral element | |name=endochondral element | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 18:09, 12 September 2014
| Name: | endochondral element | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A skeletal element that has the potential to participate in endochondral ossification, and may participate in intramembranous ossification." [VSAO:0000139] | ||
| Xrefs: |
| ||
| Synonyms: | "endochondral replacement element" EXACT [VSAO:0000139] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004765(skeletal element) |
|---|
Children
| is a: | UBERON:0002513 (endochondral bone),UBERON:0015005 (vertebra endochondral element),UBERON:0015061 (limb endochondral element) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11219-116B4 (Mesenchymal Stem Cells - Vertebral, donor1)
- 1350-25C3 (bone (os femoris), neonate N20)
- 1525-43A6 (bone (os femoris), neonate N16)
- 1985-43F5 (bone (os femoris), neonate N02)
- 56-12G2 (bone (os femoris), adult)
Mouse (Mus musculus)
- 11219-116B4 (Mesenchymal Stem Cells - Vertebral, donor1)
- 1350-25C3 (bone (os femoris), neonate N20)
- 1525-43A6 (bone (os femoris), neonate N16)
- 1985-43F5 (bone (os femoris), neonate N02)
- 56-12G2 (bone (os femoris), adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010363 (endochondral element), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.4e-49 | FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_cc1835f878c7a62de801caaddcdd3e52 | p26@Myo18a |
| 3.4e-49 | FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_cc1835f878c7a62de801caaddcdd3e52 | p26@Myo18a |
| 4.96e-49 | FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_1c4674be02d6160a113f72bdfa1033c6 | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_1c4674be02d6160a113f72bdfa1033c6 | p@chr9:21934585..21934591, - |
| 4.96e-49 | FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_1c4674be02d6160a113f72bdfa1033c6 | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_1c4674be02d6160a113f72bdfa1033c6 | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_1c4674be02d6160a113f72bdfa1033c6 | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_1c4674be02d6160a113f72bdfa1033c6 | p@chr9:21934585..21934591, - |
| 3.15e-44 | FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_1c24903dd1cdd6ca6e7486fc980abcaf | p@chr6:51525810..51525817, + |
| 3.15e-44 | FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_1c24903dd1cdd6ca6e7486fc980abcaf | p@chr6:51525810..51525817, + |
| 9.78e-40 | FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_5037825cdd3e3a9faa2782fa03be0c74 | p@chr19:4876870..4876880, - |
| 9.78e-40 | FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_5037825cdd3e3a9faa2782fa03be0c74 | p@chr19:4876870..4876880, - |
| 1.15e-39 | FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_6a3a08bbcf5c1e06e48c4af03654f839 | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_6a3a08bbcf5c1e06e48c4af03654f839 | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_6a3a08bbcf5c1e06e48c4af03654f839 | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_6a3a08bbcf5c1e06e48c4af03654f839 | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_6a3a08bbcf5c1e06e48c4af03654f839 | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_6a3a08bbcf5c1e06e48c4af03654f839 | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_6a3a08bbcf5c1e06e48c4af03654f839 | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_6a3a08bbcf5c1e06e48c4af03654f839 | p@chr6:4490674..4490679, + |
| 1.55e-39 | FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_b8a4a87b614efff82dcbbd1d8069466b | p@chr1:174143249..174143260, - |
| 1.55e-39 | FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_b8a4a87b614efff82dcbbd1d8069466b | p@chr1:174143249..174143260, - |
| 3.03e-39 | FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_1ae926c3e647f528e92d9ebf3e553d3e | p@chr6:51525869..51525891, + |
| 3.03e-39 | FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_1ae926c3e647f528e92d9ebf3e553d3e | p@chr6:51525869..51525891, + |
| 9.31e-39 | FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_27f4211e31b4084a9afd70c10975e5ea | p3@Asb16 |
| 9.31e-39 | FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_27f4211e31b4084a9afd70c10975e5ea | p3@Asb16 |
| 2.41e-35 | FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_36f3e923d6f4665cbd299bd56e3d1a1d | p@chr7:133604286..133604297, - |
| 2.41e-35 | FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_36f3e923d6f4665cbd299bd56e3d1a1d | p@chr7:133604286..133604297, - |
| 2.95e-35 | FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_f0db411f69762ed63f30f7904cf5d97a | p5@Pla2g5 |
| 2.95e-35 | FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_f0db411f69762ed63f30f7904cf5d97a | p5@Pla2g5 |
| 9.53e-34 | FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_e79333a7baca3374960b1429a1aa0332 | p2@uc009mdq.1 |
| 9.53e-34 | FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_e79333a7baca3374960b1429a1aa0332 | p2@uc009mdq.1 |
| 1.23e-33 | FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_edb5fde7bb4794d5538c85fdb6d800af | p3@Mmp9 |
| 1.23e-33 | FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_edb5fde7bb4794d5538c85fdb6d800af | p3@Mmp9 |
| 1.58e-33 | FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_8bb3b6aebbafd232dddf4f1d03bddc70 | p2@Oscar |
| 1.58e-33 | FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_8bb3b6aebbafd232dddf4f1d03bddc70 | p2@Oscar |
| 1.58e-33 | FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_8bb3b6aebbafd232dddf4f1d03bddc70 | p@chr1:166815111..166815121, - |
| 1.58e-33 | FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_8bb3b6aebbafd232dddf4f1d03bddc70 | p@chr1:166815111..166815121, - |
| 2.04e-33 | FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_f17e371edae8588868eadd8df06ffdd8 | p4@Lipc |
| 2.04e-33 | FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_f17e371edae8588868eadd8df06ffdd8 | p@chr11:75409652..75409664, + |
| 2.04e-33 | FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_f17e371edae8588868eadd8df06ffdd8 | p@chr11:75409652..75409664, + |
| 2.04e-33 | FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_f17e371edae8588868eadd8df06ffdd8 | p4@Lipc |
| 3.38e-33 | FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_4a4b4a2e6a678747002d7eda6dca48d8 | p6@Sp7 |
| 3.38e-33 | FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_4a4b4a2e6a678747002d7eda6dca48d8 | p6@Sp7 |
| 7.17e-33 | FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_496fb7dfcfbc267273080e5897b664a5 | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_496fb7dfcfbc267273080e5897b664a5 | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_496fb7dfcfbc267273080e5897b664a5 | p@chr18:76271498..76271508, + |
| 7.17e-33 | FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_496fb7dfcfbc267273080e5897b664a5 | p@chr18:76271498..76271508, + |
| 2.67e-30 | FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_cb7bf9138ff75b8a0a27f4f0cefdef4d | p@chr2:32482387..32482399, + |
| 2.67e-30 | FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_cb7bf9138ff75b8a0a27f4f0cefdef4d | p@chr2:32482387..32482399, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_cbe72835984f3fe9fa15152133617bb9 | p@chr15:58649683..58649688, - |
| 1.1e-29 | FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_cbe72835984f3fe9fa15152133617bb9 | p@chr15:58649683..58649688, - |
| 1.1e-29 | FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_cbe72835984f3fe9fa15152133617bb9 | p@chr12:70396969..70396979, + |
| 1.1e-29 | FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_cbe72835984f3fe9fa15152133617bb9 | p@chr12:70396969..70396979, + |
| 1.46e-29 | FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_a9fa07c9ae999abe64b6247ee235235e | p@chr7:133590998..133591009, - |
| 1.46e-29 | FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_a9fa07c9ae999abe64b6247ee235235e | p@chr7:133590998..133591009, - |
| 1.73e-29 | FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_db684f9f56b7c4fbbf0d63bc0ed78f63 | p2@Myoz3 |
| 1.73e-29 | FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_db684f9f56b7c4fbbf0d63bc0ed78f63 | p2@Myoz3 |
| 2.42e-29 | FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_9a907da47ea01e685790b59a57028b40 | p2@Myh4 |
| 2.42e-29 | FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_9a907da47ea01e685790b59a57028b40 | p2@Myh4 |
| 7.46e-29 | FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_dc8467da4e48af155c6ee3e8f3e14ad2 | p@chr1:57155729..57155740, - |
| 7.46e-29 | FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_dc8467da4e48af155c6ee3e8f3e14ad2 | p@chr1:57155729..57155740, - |
| 9.26e-29 | FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_48983476fc11836a3101fd13a01cc559 | p@chr11:67056544..67056589, - |
| 9.26e-29 | FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_48983476fc11836a3101fd13a01cc559 | p@chr11:67056544..67056589, - |
| 9.26e-29 | FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_48983476fc11836a3101fd13a01cc559 | p1@Msmp |
| 9.26e-29 | FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_48983476fc11836a3101fd13a01cc559 | p1@Msmp |
| 1.15e-28 | FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_f01f6571304350b36602c5d2c3b45d53 | p@chr6:90552017..90552024, + |
| 1.15e-28 | FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_f01f6571304350b36602c5d2c3b45d53 | p@chrY:2858251..2858257, + |
| 1.15e-28 | FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_f01f6571304350b36602c5d2c3b45d53 | p@chrY:2858251..2858257, + |
| 1.15e-28 | FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_f01f6571304350b36602c5d2c3b45d53 | p@chr6:90552017..90552024, + |
| 1.43e-28 | FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_fe3256af1a21860c78701a2595623031 | p@chr6:34436258..34436292, + |
| 1.43e-28 | FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_fe3256af1a21860c78701a2595623031 | p@chr6:34436258..34436292, + |
| 2.2e-28 | FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_6a67b3499dfa52832f27400cc8d39882 | p@chr11:67069796..67069817, - |
| 2.2e-28 | FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_6a67b3499dfa52832f27400cc8d39882 | p@chr11:67069796..67069817, - |
| 2.72e-28 | FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_0f4dcd73485a236ad5f7b900a74fdda9 | p@chr8:107702369..107702386, + |
| 2.72e-28 | FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_0f4dcd73485a236ad5f7b900a74fdda9 | p@chr8:107702369..107702386, + |
| 3.45e-28 | FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_80627cd4df62c22747caa9baef17cad0 | p1@Siglec15 |
| 3.45e-28 | FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_80627cd4df62c22747caa9baef17cad0 | p1@Siglec15 |
| 6.5e-28 | FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_27adba2abcb0a05067e0b2abaf85189d | p6@Atp2a1 |
| 6.5e-28 | FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_27adba2abcb0a05067e0b2abaf85189d | p6@Atp2a1 |
| 8.9e-28 | FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_7084e312df39daa5778076bb75c67636 | p7@Atp2a1 |
| 8.9e-28 | FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_7084e312df39daa5778076bb75c67636 | p7@Atp2a1 |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_1e53e63ba92d6b80bcce1769747db36a | p@chr7:133592162..133592188, - |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_1e53e63ba92d6b80bcce1769747db36a | p@chr7:133592162..133592188, - |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_1e53e63ba92d6b80bcce1769747db36a | p@chr7:133600635..133600663, + |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_1e53e63ba92d6b80bcce1769747db36a | p@chr7:133600635..133600663, + |
| 6.75e-27 | FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_076a8ad57c852194fef5c8505be9c9d7 | p4@Sgca |
| 6.75e-27 | FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_076a8ad57c852194fef5c8505be9c9d7 | p4@Sgca |
| 1.66e-26 | FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_8d1ccd1034198e7fe38482ba8d121ead | p1@Mepe |
| 1.66e-26 | FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_8d1ccd1034198e7fe38482ba8d121ead | p1@Mepe |
| 3.47e-26 | FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_e12b50c5f66b443f4dc69834e7d0ac71 | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_e12b50c5f66b443f4dc69834e7d0ac71 | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_e12b50c5f66b443f4dc69834e7d0ac71 | p2@Tm4sf19 |
| 3.47e-26 | FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_e12b50c5f66b443f4dc69834e7d0ac71 | p2@Tm4sf19 |
| 1.12e-25 | FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_e10f5851b6c8bff83fb9c787f0f02fcd | p5@Col11a2 |
| 1.12e-25 | FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_e10f5851b6c8bff83fb9c787f0f02fcd | p5@Col11a2 |
| 1.12e-25 | FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_e10f5851b6c8bff83fb9c787f0f02fcd | p@chr15:97806574..97806585, - |
| 1.12e-25 | FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_e10f5851b6c8bff83fb9c787f0f02fcd | p@chr15:97806574..97806585, - |
| 1.36e-25 | FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_14f1a5274b0d6a7c740e644bba2e22da | p@chr2:180890942..180890956, - |
| 1.36e-25 | FFCP PHASE1:Mm9::chr18:78254174..78254185,-#_14f1a5274b0d6a7c740e644bba2e22da | p2@Siglec15 |
