Personal tools

UBERON:0000122: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{UBERON |id=UBERON:0000122 |name=neuron projection bundle |namespace= |def="A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synaps...")
 
No edit summary
Line 21: Line 21:
|part_of=UBERON:0001016
|part_of=UBERON:0001016
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
}}
}}

Revision as of 17:08, 15 June 2012

Name:neuron projection bundle
Definition:"A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses." [CARO:0001001, FBbt:00005099, FBC:DOS]
Xrefs:
links:

CARO:0001001

FBbt:00005099
Synonyms: "funiculus" EXACT []
"nerve fiber bundle" EXACT [FBbt:00005099]
"neural fiber bundle" EXACT []
Alt_id: UBERON:0005163

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000073(regional part of nervous system),UBERON:0005162(multi cell component structure)
part_of:UBERON:0001016(nervous system)



Children

is a:UBERON:0001018 (axon tract),UBERON:0001021 (nerve)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000122 (neuron projection bundle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE2:Hg19::chr12:78359873..78359882,+#_a8c3657c1c4aa97f914cb3ea4b166f71p41@NAV3
3.29e-195FFCP PHASE1:Hg19::chr12:78359873..78359882,+#_a8c3657c1c4aa97f914cb3ea4b166f71p41@NAV3
4.61e-131FFCP PHASE1:Hg19::chr12:78359680..78359686,+#_4a2b19d24222ae4d90d2d84147213aeep32@NAV3
4.61e-131FFCP PHASE2:Hg19::chr12:78359680..78359686,+#_4a2b19d24222ae4d90d2d84147213aeep32@NAV3
8.99e-131FFCP PHASE2:Hg19::chr4:645709..645712,+#_900de1abb7a6bee0f16422626843351bp15@PDE6B
8.99e-131FFCP PHASE1:Hg19::chr4:645709..645712,+#_900de1abb7a6bee0f16422626843351bp15@PDE6B
5.68e-99FFCP PHASE2:Hg19::chr4:74005833..74005844,-#_eb07e1343b541846410a8576d2de3289p@chr4:74005833..74005844, -
5.68e-99FFCP PHASE1:Hg19::chrX:103031196..103031205,-#_eb07e1343b541846410a8576d2de3289p@chrX:103031196..103031205, -
5.68e-99FFCP PHASE1:Hg19::chr4:74005833..74005844,-#_eb07e1343b541846410a8576d2de3289p@chr4:74005833..74005844, -
5.68e-99FFCP PHASE2:Hg19::chrX:103031196..103031205,-#_eb07e1343b541846410a8576d2de3289p@chrX:103031196..103031205, -
9.38e-99FFCP PHASE1:Hg19::chr3:160203278..160203289,-#_ab29d9ae1827d8c42e71cb5242e4b6a3p8@TRIM59
9.38e-99FFCP PHASE1:Hg19::chr17:36726052..36726061,-#_ab29d9ae1827d8c42e71cb5242e4b6a3p@chr17:36726052..36726061, -
9.38e-99FFCP PHASE2:Hg19::chr3:160203278..160203289,-#_ab29d9ae1827d8c42e71cb5242e4b6a3p8@TRIM59
9.38e-99FFCP PHASE2:Hg19::chr17:36726052..36726061,-#_ab29d9ae1827d8c42e71cb5242e4b6a3p@chr17:36726052..36726061, -
1.55e-98FFCP PHASE2:Hg19::chr14:36462819..36462832,+#_170543cb3eaa3a41ffc53a03e50ad3ccp@chr14:36462819..36462832, +
1.55e-98FFCP PHASE1:Hg19::chr14:36462819..36462832,+#_170543cb3eaa3a41ffc53a03e50ad3ccp@chr14:36462819..36462832, +
1.55e-98FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_170543cb3eaa3a41ffc53a03e50ad3ccp@chr12:57628762..57628773, -
1.55e-98FFCP PHASE1:Hg19::chr7:30202318..30202329,+#_170543cb3eaa3a41ffc53a03e50ad3ccp@chr7:30202318..30202329, +
1.55e-98FFCP PHASE2:Hg19::chr7:30202318..30202329,+#_170543cb3eaa3a41ffc53a03e50ad3ccp@chr7:30202318..30202329, +
1.55e-98FFCP PHASE2:Hg19::chr17:73689469..73689476,-#_170543cb3eaa3a41ffc53a03e50ad3ccp@chr17:73689469..73689476, -
1.55e-98FFCP PHASE2:Hg19::chr5:60927228..60927236,-#_170543cb3eaa3a41ffc53a03e50ad3ccp3@BC032909, p3@BC032910
1.55e-98FFCP PHASE2:Hg19::chr15:93827399..93827403,+#_170543cb3eaa3a41ffc53a03e50ad3ccp@chr15:93827399..93827403, +
1.55e-98FFCP PHASE1:Hg19::chr15:93827399..93827403,+#_170543cb3eaa3a41ffc53a03e50ad3ccp@chr15:93827399..93827403, +
1.55e-98FFCP PHASE1:Hg19::chr5:60927228..60927236,-#_170543cb3eaa3a41ffc53a03e50ad3ccp3@BC032909, p3@BC032910
1.55e-98FFCP PHASE1:Hg19::chr17:73689469..73689476,-#_170543cb3eaa3a41ffc53a03e50ad3ccp@chr17:73689469..73689476, -
1.55e-98FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_170543cb3eaa3a41ffc53a03e50ad3ccp@chr12:57628762..57628773, -
2.56e-98FFCP PHASE2:Hg19::chrX:28605300..28605301,+#_f27f7e25763604ffa8c9251668142227p8@IL1RAPL1
2.56e-98FFCP PHASE1:Hg19::chrX:28605300..28605301,+#_f27f7e25763604ffa8c9251668142227p8@IL1RAPL1
2.56e-98FFCP PHASE1:Hg19::chr11:117585539..117585541,-#_f27f7e25763604ffa8c9251668142227p@chr11:117585539..117585541, -
2.56e-98FFCP PHASE2:Hg19::chr11:117585539..117585541,-#_f27f7e25763604ffa8c9251668142227p@chr11:117585539..117585541, -
4.22e-98FFCP PHASE2:Hg19::chr12:99288459..99288464,-#_cfe2ac615fd5487090b1007cad4f3f57p38@ANKS1B
4.22e-98FFCP PHASE1:Hg19::chr12:99288459..99288464,-#_cfe2ac615fd5487090b1007cad4f3f57p38@ANKS1B
1.05e-79FFCP PHASE2:Hg19::chr14:35514351..35514356,+#_6e94d089b11eaad2466a4c57b38e4ea7p10@FAM177A1
1.05e-79FFCP PHASE1:Hg19::chr14:35514351..35514356,+#_6e94d089b11eaad2466a4c57b38e4ea7p10@FAM177A1
1.05e-79FFCP PHASE2:Hg19::chr7:123673069..123673078,-#_6e94d089b11eaad2466a4c57b38e4ea7p3@TMEM229A
1.05e-79FFCP PHASE1:Hg19::chr7:123673069..123673078,-#_6e94d089b11eaad2466a4c57b38e4ea7p3@TMEM229A
1.56e-79FFCP PHASE1:Hg19::chr1:113638921..113638937,+#_fc456de42bb3f73ec8e7fb6538fa1f8dp@chr1:113638921..113638937, +
1.56e-79FFCP PHASE2:Hg19::chr10:1246202..1246207,-#_fc456de42bb3f73ec8e7fb6538fa1f8dp19@ADARB2
1.56e-79FFCP PHASE1:Hg19::chr11:119846488..119846499,+#_fc456de42bb3f73ec8e7fb6538fa1f8dp@chr11:119846488..119846499, +
1.56e-79FFCP PHASE2:Hg19::chr11:119846488..119846499,+#_fc456de42bb3f73ec8e7fb6538fa1f8dp@chr11:119846488..119846499, +
1.56e-79FFCP PHASE2:Hg19::chr7:149480688..149480699,+#_fc456de42bb3f73ec8e7fb6538fa1f8dp@chr7:149480688..149480699, +
1.56e-79FFCP PHASE1:Hg19::chr10:1246202..1246207,-#_fc456de42bb3f73ec8e7fb6538fa1f8dp19@ADARB2
1.56e-79FFCP PHASE1:Hg19::chr7:149480688..149480699,+#_fc456de42bb3f73ec8e7fb6538fa1f8dp@chr7:149480688..149480699, +
1.56e-79FFCP PHASE2:Hg19::chr1:113638921..113638937,+#_fc456de42bb3f73ec8e7fb6538fa1f8dp@chr1:113638921..113638937, +
2.34e-79FFCP PHASE2:Hg19::chr7:75268487..75268499,-#_a4fb667dd515b4c3b235eb622aa2d49cp@chr7:75268487..75268499, -
2.34e-79FFCP PHASE2:Hg19::chr19:1882247..1882274,-#_a4fb667dd515b4c3b235eb622aa2d49cp5@FAM108A1
2.34e-79FFCP PHASE1:Hg19::chr19:1882247..1882274,-#_a4fb667dd515b4c3b235eb622aa2d49cp5@FAM108A1
2.34e-79FFCP PHASE1:Hg19::chr7:75268487..75268499,-#_a4fb667dd515b4c3b235eb622aa2d49cp@chr7:75268487..75268499, -
2.34e-79FFCP PHASE2:Hg19::chr5:55069021..55069040,-#_a4fb667dd515b4c3b235eb622aa2d49cp8@SLC38A9
2.34e-79FFCP PHASE1:Hg19::chr5:55069021..55069040,-#_a4fb667dd515b4c3b235eb622aa2d49cp8@SLC38A9
3.49e-79FFCP PHASE2:Hg19::chr10:1246245..1246252,-#_ab6e47aa0a35092fa3ec91988bc60e9cp20@ADARB2
3.49e-79FFCP PHASE2:Hg19::chr22:41636943..41636946,-#_ab6e47aa0a35092fa3ec91988bc60e9cp12@CHADL
3.49e-79FFCP PHASE1:Hg19::chr22:41636943..41636946,-#_ab6e47aa0a35092fa3ec91988bc60e9cp12@CHADL
3.49e-79FFCP PHASE1:Hg19::chr10:1246245..1246252,-#_ab6e47aa0a35092fa3ec91988bc60e9cp20@ADARB2
7.41e-67FFCP PHASE2:Hg19::chr8:22411813..22411825,+#_1c46410313ccfd06b3ee965ef3237e9dp55@SORBS3
7.41e-67FFCP PHASE1:Hg19::chr8:22411813..22411825,+#_1c46410313ccfd06b3ee965ef3237e9dp55@SORBS3
1.04e-66FFCP PHASE1:Hg19::chr17:76227461..76227467,+#_4f1419bfecfe3bbfd99bacab627c51a5p17@TMEM235
1.04e-66FFCP PHASE2:Hg19::chr17:76227461..76227467,+#_4f1419bfecfe3bbfd99bacab627c51a5p17@TMEM235
1.45e-66FFCP PHASE2:Hg19::chr3:135974687..135974698,+#_263e60191bae68b6376b72f80386e135p5@PCCB
1.45e-66FFCP PHASE2:Hg19::chr17:42992088..42992109,-#_263e60191bae68b6376b72f80386e135p@chr17:42992088..42992109, -
1.45e-66FFCP PHASE2:Hg19::chr9:92051280..92051285,-#_263e60191bae68b6376b72f80386e135p13@SEMA4D
1.45e-66FFCP PHASE2:Hg19::chr9:104031973..104031984,+#_263e60191bae68b6376b72f80386e135p16@LPPR1
1.45e-66FFCP PHASE1:Hg19::chr9:104031973..104031984,+#_263e60191bae68b6376b72f80386e135p16@LPPR1
1.45e-66FFCP PHASE1:Hg19::chr17:42992088..42992109,-#_263e60191bae68b6376b72f80386e135p@chr17:42992088..42992109, -
1.45e-66FFCP PHASE2:Hg19::chr2:102413776..102413787,+#_263e60191bae68b6376b72f80386e135p41@MAP4K4
1.45e-66FFCP PHASE1:Hg19::chr2:102413776..102413787,+#_263e60191bae68b6376b72f80386e135p41@MAP4K4
1.45e-66FFCP PHASE1:Hg19::chr3:135974687..135974698,+#_263e60191bae68b6376b72f80386e135p5@PCCB
1.45e-66FFCP PHASE1:Hg19::chr9:92051280..92051285,-#_263e60191bae68b6376b72f80386e135p13@SEMA4D
2.03e-66FFCP PHASE2:Hg19::chr16:81652549..81652560,+#_2d5d41d15e1e1f595f93d1f403e081bap1@AK094104
2.03e-66FFCP PHASE1:Hg19::chr2:201599836..201599844,-#_2d5d41d15e1e1f595f93d1f403e081bap3@LOC100507140
2.03e-66FFCP PHASE2:Hg19::chr2:201599836..201599844,-#_2d5d41d15e1e1f595f93d1f403e081bap3@LOC100507140
2.03e-66FFCP PHASE1:Hg19::chr14:75614593..75614605,-#_2d5d41d15e1e1f595f93d1f403e081bap13@TMED10
2.03e-66FFCP PHASE2:Hg19::chr14:75614593..75614605,-#_2d5d41d15e1e1f595f93d1f403e081bap13@TMED10
2.03e-66FFCP PHASE1:Hg19::chr16:81652549..81652560,+#_2d5d41d15e1e1f595f93d1f403e081bap1@AK094104
7.73e-66FFCP PHASE2:Hg19::chr5:86418005..86418017,-#_f1b916780a4aaa443f09940fe9b99291p@chr5:86418005..86418017, -
7.73e-66FFCP PHASE1:Hg19::chr5:86418005..86418017,-#_f1b916780a4aaa443f09940fe9b99291p@chr5:86418005..86418017, -
1.13e-57FFCP PHASE2:Hg19::chr10:22892347..22892352,-#_c730dec71cf054b3c9e56004d803313bp@chr10:22892347..22892352, -
1.13e-57FFCP PHASE2:Hg19::chr15:79356834..79356842,-#_c730dec71cf054b3c9e56004d803313bp15@RASGRF1
1.13e-57FFCP PHASE1:Hg19::chr15:79356834..79356842,-#_c730dec71cf054b3c9e56004d803313bp15@RASGRF1
1.13e-57FFCP PHASE2:Hg19::chr21:45725770..45725792,+#_c730dec71cf054b3c9e56004d803313bp@chr21:45725770..45725792, +
1.13e-57FFCP PHASE1:Hg19::chr21:45725770..45725792,+#_c730dec71cf054b3c9e56004d803313bp@chr21:45725770..45725792, +
1.13e-57FFCP PHASE1:Hg19::chr10:22892347..22892352,-#_c730dec71cf054b3c9e56004d803313bp@chr10:22892347..22892352, -
1.13e-57FFCP PHASE2:Hg19::chr9:135089670..135089681,-#_c730dec71cf054b3c9e56004d803313bp@chr9:135089670..135089681, -
1.13e-57FFCP PHASE1:Hg19::chr9:135089670..135089681,-#_c730dec71cf054b3c9e56004d803313bp@chr9:135089670..135089681, -
1.51e-57FFCP PHASE1:Hg19::chr17:76227978..76227989,+#_88a82ed8cfb9fe1ca19a1e008beb872dp15@TMEM235
1.51e-57FFCP PHASE2:Hg19::chr17:76227978..76227989,+#_88a82ed8cfb9fe1ca19a1e008beb872dp15@TMEM235
2.02e-57FFCP PHASE2:Hg19::chr1:155940355..155940366,-#_f21effa5915a1bd396a2e98a24839744p43@ARHGEF2
2.02e-57FFCP PHASE1:Hg19::chr1:155940355..155940366,-#_f21effa5915a1bd396a2e98a24839744p43@ARHGEF2
2.02e-57FFCP PHASE1:Hg19::chr12:48166059..48166070,+#_f21effa5915a1bd396a2e98a24839744p@chr12:48166059..48166070, +
2.02e-57FFCP PHASE1:Hg19::chr3:183543234..183543241,-#_f21effa5915a1bd396a2e98a24839744p7@MAP6D1
2.02e-57FFCP PHASE2:Hg19::chr22:41636994..41637004,-#_f21effa5915a1bd396a2e98a24839744p9@CHADL
2.02e-57FFCP PHASE2:Hg19::chr8:26491518..26491523,+#_f21effa5915a1bd396a2e98a24839744p@chr8:26491518..26491523, +
2.02e-57FFCP PHASE1:Hg19::chr8:26491518..26491523,+#_f21effa5915a1bd396a2e98a24839744p@chr8:26491518..26491523, +
2.02e-57FFCP PHASE1:Hg19::chr10:14614090..14614091,-#_f21effa5915a1bd396a2e98a24839744p22@FAM107B
2.02e-57FFCP PHASE2:Hg19::chr12:48166059..48166070,+#_f21effa5915a1bd396a2e98a24839744p@chr12:48166059..48166070, +
2.02e-57FFCP PHASE1:Hg19::chr22:41636994..41637004,-#_f21effa5915a1bd396a2e98a24839744p9@CHADL
2.02e-57FFCP PHASE2:Hg19::chr10:14614090..14614091,-#_f21effa5915a1bd396a2e98a24839744p22@FAM107B
2.02e-57FFCP PHASE2:Hg19::chr3:183543234..183543241,-#_f21effa5915a1bd396a2e98a24839744p7@MAP6D1
2.69e-57FFCP PHASE2:Hg19::chr17:76247000..76247021,-#_8156c1a0a2740726dd276c4c8acbf190p@chr17:76247000..76247021, -
2.69e-57FFCP PHASE1:Hg19::chr19:31158547..31158552,+#_8156c1a0a2740726dd276c4c8acbf190p@chr19:31158547..31158552, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0000122&oldid=1832433"