UBERON:0006853: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0006853
|name=renal cortex tubule
|namespace=
|def=
|xref=EMAPA:18976;;MA:0002609
|is_a=UBERON:0007685
|synonym=
|comment=
|alt_id=
|disjoint_fro...") |
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|part_of=UBERON:0001225 | |part_of=UBERON:0001225 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
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Revision as of 17:24, 15 June 2012
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0007685(region of nephron tubule) |
|---|---|
| part_of: | UBERON:0001225(cortex of kidney) |
Children
| is a: | UBERON:0004134 (proximal tubule) |
|---|---|
| part of: | CL:1000615 (kidney cortex tubule cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
- 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
- 11676-122H2 (Renal Proximal Tubular Epithelial Cell, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006853 (renal cortex tubule), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 8.98e-131 | FFCP PHASE1:Hg19::chr5:167718782..167718785,+#_ea18818c427479f38e9d2159a86744e7 | p10@WWC1 |
| 8.98e-131 | FFCP PHASE2:Hg19::chr5:167718782..167718785,+#_ea18818c427479f38e9d2159a86744e7 | p10@WWC1 |
| 1.01e-74 | FFCP PHASE1:Hg19::chr3:149260147..149260154,-#_d1988577bebb93851ff4a01bf30473d5 | p39@WWTR1 |
| 1.01e-74 | FFCP PHASE2:Hg19::chr3:149260147..149260154,-#_d1988577bebb93851ff4a01bf30473d5 | p39@WWTR1 |
| 1.24e-73 | FFCP PHASE2:Hg19::chr17:46679250..46679298,+#_b42db06f9ebf35c89baa43b0e7233b2b | p1@ENST00000491264 |
| 1.24e-73 | FFCP PHASE1:Hg19::chr17:46679250..46679298,+#_b42db06f9ebf35c89baa43b0e7233b2b | p1@ENST00000491264 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr16:61687533..61687551,-#_b7f3a45a8599054a745d254d8f8a660f | p@chr16:61687533..61687551, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr16:61687533..61687551,-#_b7f3a45a8599054a745d254d8f8a660f | p@chr16:61687533..61687551, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr3:123667850..123667851,+#_b7f3a45a8599054a745d254d8f8a660f | p@chr3:123667850..123667851, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr16:62055187..62055188,+#_b7f3a45a8599054a745d254d8f8a660f | p@chr16:62055187..62055188, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr8:6614884..6614885,+#_b7f3a45a8599054a745d254d8f8a660f | p@chr8:6614884..6614885, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr16:62055187..62055188,+#_b7f3a45a8599054a745d254d8f8a660f | p@chr16:62055187..62055188, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr3:123667850..123667851,+#_b7f3a45a8599054a745d254d8f8a660f | p@chr3:123667850..123667851, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr8:6614884..6614885,+#_b7f3a45a8599054a745d254d8f8a660f | p@chr8:6614884..6614885, + |
| 1.22e-59 | FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_770a8485e9b55a38044d658db26dba17 | p4@MEGF11 |
| 1.22e-59 | FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_770a8485e9b55a38044d658db26dba17 | p4@MEGF11 |
| 3.75e-53 | FFCP PHASE2:Hg19::chr9:114828174..114828179,+#_3676ec1e9fabf92c83fa8fa2bf211e5f | p@chr9:114828174..114828179, + |
| 3.75e-53 | FFCP PHASE1:Hg19::chr9:114828174..114828179,+#_3676ec1e9fabf92c83fa8fa2bf211e5f | p@chr9:114828174..114828179, + |
| 1.65e-46 | FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_8cb1281699042ae03296c6343cb48438 | p@chr7:140227349..140227360, - |
| 1.65e-46 | FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_8cb1281699042ae03296c6343cb48438 | p@chr7:140227349..140227360, - |
| 7.81e-45 | FFCP PHASE2:Hg19::chr6:30890373..30890381,+#_bc8036fa000dffba1312ffd9e143d973 | p9@VARS2 |
| 7.81e-45 | FFCP PHASE1:Hg19::chr6:30890373..30890381,+#_bc8036fa000dffba1312ffd9e143d973 | p9@VARS2 |
| 6.91e-39 | FFCP PHASE1:Hg19::chr6:30890456..30890482,+#_d93519abef1db65057d9a7d1abd13d2d | p11@VARS2 |
| 6.91e-39 | FFCP PHASE2:Hg19::chr6:30890456..30890482,+#_d93519abef1db65057d9a7d1abd13d2d | p11@VARS2 |
| 1.49e-38 | FFCP PHASE1:Hg19::chr11:33718564..33718585,-#_721445b0f847970e555f8c77a11c7d73 | p1@ENST00000534431 |
| 1.49e-38 | FFCP PHASE2:Hg19::chr11:33718564..33718585,-#_721445b0f847970e555f8c77a11c7d73 | p1@ENST00000534431 |
| 2.64e-38 | FFCP PHASE1:Hg19::chr7:53466339..53466356,-#_04e9fbe8d8bf114e606603c259788f16 | p@chr7:53466339..53466356, - |
| 2.64e-38 | FFCP PHASE2:Hg19::chr7:53466339..53466356,-#_04e9fbe8d8bf114e606603c259788f16 | p@chr7:53466339..53466356, - |
| 3.48e-38 | FFCP PHASE2:Hg19::chr17:18160552..18160565,-#_2e62b2533a74f673dc291fbc2c3c784f | p@chr17:18160552..18160565, - |
| 3.48e-38 | FFCP PHASE1:Hg19::chr17:18160552..18160565,-#_2e62b2533a74f673dc291fbc2c3c784f | p@chr17:18160552..18160565, - |
| 3.86e-38 | FFCP PHASE1:Hg19::chr3:190105820..190105829,+#_f41eb38c12cc4de55b36699a92d5eabb | p3@CLDN16 |
| 3.86e-38 | FFCP PHASE2:Hg19::chr3:190105820..190105829,+#_f41eb38c12cc4de55b36699a92d5eabb | p3@CLDN16 |
| 5.76e-38 | FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_f0864bbcf02ff07885560fa8d5cfe308 | p@chr1:1100457..1100470, + |
| 5.76e-38 | FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_f0864bbcf02ff07885560fa8d5cfe308 | p@chr1:1100457..1100470, + |
| 2.08e-36 | FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_fb2534621bc3c08a1a8b2ce07324aa0a | p4@AIF1L |
| 2.08e-36 | FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_fb2534621bc3c08a1a8b2ce07324aa0a | p4@AIF1L |
| 2.25e-35 | FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_77d4c7906c0cdede14f3daa4449c1368 | p4@PAX2 |
| 2.25e-35 | FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_77d4c7906c0cdede14f3daa4449c1368 | p4@PAX2 |
| 3.2e-35 | FFCP PHASE1:Hg19::chr12:6485243..6485254,-#_99a2eb39bfc3f1bb494b15a2998b24cd | p18@SCNN1A |
| 3.2e-35 | FFCP PHASE2:Hg19::chr12:6485243..6485254,-#_99a2eb39bfc3f1bb494b15a2998b24cd | p18@SCNN1A |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:31023284..31023287,-#_00501f2a912b3bf99e42c5f1de090d7c | p@chr6:31023284..31023287, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:31023284..31023287,-#_00501f2a912b3bf99e42c5f1de090d7c | p@chr6:31023284..31023287, - |
| 2.09e-33 | FFCP PHASE1:Hg19::chr2:113994209..113994222,-#_f440e7f5c53885d2e8f3da05f4541d3c | p11@PAX8 |
| 2.09e-33 | FFCP PHASE2:Hg19::chr2:113994209..113994222,-#_f440e7f5c53885d2e8f3da05f4541d3c | p11@PAX8 |
| 1.41e-32 | FFCP PHASE1:Hg19::chr14:57960456..57960478,-#_6f8ad623d2ac4d409e130a95bd7cfa8a | p2@C14orf105 |
| 1.41e-32 | FFCP PHASE2:Hg19::chr14:57960456..57960478,-#_6f8ad623d2ac4d409e130a95bd7cfa8a | p2@C14orf105 |
| 2.17e-32 | FFCP PHASE1:Hg19::chr3:190105935..190105966,+#_3cbf678f1ae9a34510832fb5f47766a7 | p1@CLDN16 |
| 2.17e-32 | FFCP PHASE2:Hg19::chr3:190105935..190105966,+#_3cbf678f1ae9a34510832fb5f47766a7 | p1@CLDN16 |
| 3.1e-30 | FFCP PHASE1:Hg19::chr3:112127710..112127713,-#_711c8886d4cc7fb3f1735c6dc7222bbf | p@chr3:112127710..112127713, - |
| 3.1e-30 | FFCP PHASE2:Hg19::chr3:112127710..112127713,-#_711c8886d4cc7fb3f1735c6dc7222bbf | p@chr3:112127710..112127713, - |
| 4.84e-30 | FFCP PHASE2:Hg19::chr20:49347516..49347535,-#_bd63c369e08d2fed2896b580cf9762f2 | p@chr20:49347516..49347535, - |
| 4.84e-30 | FFCP PHASE1:Hg19::chr20:49347516..49347535,-#_bd63c369e08d2fed2896b580cf9762f2 | p@chr20:49347516..49347535, - |
| 6.17e-30 | FFCP PHASE2:Hg19::chr6:30890348..30890372,+#_ad71bb6e6140efa0c3770228113bbbcf | p5@VARS2 |
| 6.17e-30 | FFCP PHASE1:Hg19::chr6:30890348..30890372,+#_ad71bb6e6140efa0c3770228113bbbcf | p5@VARS2 |
| 8.26e-30 | FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_4d58a811e1b81bc0bdae28e05875a062 | p3@AIF1L |
| 8.26e-30 | FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_4d58a811e1b81bc0bdae28e05875a062 | p3@AIF1L |
| 8.74e-30 | FFCP PHASE2:Hg19::chr3:190106002..190106011,+#_06953e08bdca248ebb3af9aee0547c51 | p4@CLDN16 |
| 8.74e-30 | FFCP PHASE1:Hg19::chr3:190106002..190106011,+#_06953e08bdca248ebb3af9aee0547c51 | p4@CLDN16 |
| 4.28e-29 | FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_4e86ad5168da86df8ad5e890f47ae4c9 | p@chr7:7606139..7606151, - |
| 4.28e-29 | FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_4e86ad5168da86df8ad5e890f47ae4c9 | p@chr7:7606139..7606151, - |
| 5.09e-29 | FFCP PHASE1:Hg19::chr6:30890599..30890626,+#_59f0402caa7370a0b14953c63994fc57 | p4@VARS2 |
| 5.09e-29 | FFCP PHASE2:Hg19::chr6:30890599..30890626,+#_59f0402caa7370a0b14953c63994fc57 | p4@VARS2 |
| 4.74e-28 | FFCP PHASE2:Hg19::chr11:117695245..117695263,-#_91cbbe48ef51e4b574c6a86b2e55c68a | p7@FXYD2 |
| 4.74e-28 | FFCP PHASE1:Hg19::chr11:117695245..117695263,-#_91cbbe48ef51e4b574c6a86b2e55c68a | p7@FXYD2 |
| 2.38e-27 | FFCP PHASE1:Hg19::chr11:117695233..117695244,-#_6488da6851847ba412accbac0208790f | p11@FXYD2 |
| 2.38e-27 | FFCP PHASE2:Hg19::chr11:117695233..117695244,-#_6488da6851847ba412accbac0208790f | p11@FXYD2 |
| 3.11e-27 | FFCP PHASE1:Hg19::chr10:91043499..91043510,+#_71d8385273e1b3b731cf2dd4911c9ce6 | p2@ENST00000354541 |
| 3.11e-27 | FFCP PHASE2:Hg19::chr10:91043499..91043510,+#_71d8385273e1b3b731cf2dd4911c9ce6 | p2@ENST00000354541 |
| 5.07e-27 | FFCP PHASE1:Hg19::chr1:17519128..17519138,+#_69903dd9fd58a08aef9485168297a4be | p@chr1:17519128..17519138, + |
| 5.07e-27 | FFCP PHASE2:Hg19::chr1:17519128..17519138,+#_69903dd9fd58a08aef9485168297a4be | p@chr1:17519128..17519138, + |
| 1.22e-26 | FFCP PHASE1:Hg19::chr18:77104123..77104150,+#_0b5baf81032a4efce162befe63731480 | p5@ATP9B |
| 1.22e-26 | FFCP PHASE2:Hg19::chr18:77104123..77104150,+#_0b5baf81032a4efce162befe63731480 | p5@ATP9B |
| 2.01e-25 | FFCP PHASE1:Hg19::chr7:98453821..98453843,-#_000b97eec584325408419d39624107ee | p@chr7:98453821..98453843, - |
| 2.01e-25 | FFCP PHASE2:Hg19::chr7:98453821..98453843,-#_000b97eec584325408419d39624107ee | p@chr7:98453821..98453843, - |
| 4.31e-25 | FFCP PHASE1:Hg19::chr2:167467988..167467993,-#_0acb256a7d7217c2ba9027a4397cbcdc | p@chr2:167467988..167467993, - |
| 4.31e-25 | FFCP PHASE1:Hg19::chr9:133986740..133986750,+#_0acb256a7d7217c2ba9027a4397cbcdc | p7@AIF1L |
| 4.31e-25 | FFCP PHASE2:Hg19::chr2:167467988..167467993,-#_0acb256a7d7217c2ba9027a4397cbcdc | p@chr2:167467988..167467993, - |
| 4.31e-25 | FFCP PHASE2:Hg19::chr9:133986740..133986750,+#_0acb256a7d7217c2ba9027a4397cbcdc | p7@AIF1L |
| 5.5e-25 | FFCP PHASE2:Hg19::chr2:189157368..189157381,-#_ed599ca8915b7af1bae2048f089b7fee | p@chr2:189157368..189157381, - |
| 5.5e-25 | FFCP PHASE1:Hg19::chr2:189157368..189157381,-#_ed599ca8915b7af1bae2048f089b7fee | p@chr2:189157368..189157381, - |
| 7.93e-25 | FFCP PHASE2:Hg19::chr9:119741711..119741743,-#_cbec66529fedf25cb9a24804861775b0 | p@chr9:119741711..119741743, - |
| 7.93e-25 | FFCP PHASE1:Hg19::chr9:119741711..119741743,-#_cbec66529fedf25cb9a24804861775b0 | p@chr9:119741711..119741743, - |
| 8.07e-25 | FFCP PHASE1:Hg19::chr19:51472081..51472088,-#_5467c4438eb2096e9917ee6d193e2964 | p8@KLK6 |
| 8.07e-25 | FFCP PHASE2:Hg19::chr19:51472081..51472088,-#_5467c4438eb2096e9917ee6d193e2964 | p8@KLK6 |
| 1.21e-24 | FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_8c36308d875a29417bb05a6cf5dfd234 | p7@HOXA10 |
| 1.21e-24 | FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_8c36308d875a29417bb05a6cf5dfd234 | p7@HOXA10 |
| 1.29e-24 | FFCP PHASE1:Hg19::chr20:6034241..6034256,-#_79274cae88540f63f8bb57af054a1205 | p@chr20:6034241..6034256, - |
| 1.29e-24 | FFCP PHASE2:Hg19::chr20:6034241..6034256,-#_79274cae88540f63f8bb57af054a1205 | p@chr20:6034241..6034256, - |
| 7.91e-24 | FFCP PHASE1:Hg19::chr11:117695415..117695426,-#_7cdcd3380ca8e0316db5fa9ddfe59cdc | p3@FXYD2 |
| 7.91e-24 | FFCP PHASE2:Hg19::chr11:117695415..117695426,-#_7cdcd3380ca8e0316db5fa9ddfe59cdc | p3@FXYD2 |
| 7.91e-24 | FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_7cdcd3380ca8e0316db5fa9ddfe59cdc | p2@B3GALT5 |
| 7.91e-24 | FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_7cdcd3380ca8e0316db5fa9ddfe59cdc | p2@B3GALT5 |
| 9.99e-24 | FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_f30235878295a74b77747c5c2d018554 | p3@PAX2 |
| 9.99e-24 | FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_f30235878295a74b77747c5c2d018554 | p@chr18:3456189..3456200, + |
| 9.99e-24 | FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_f30235878295a74b77747c5c2d018554 | p@chr18:3456189..3456200, + |
| 9.99e-24 | FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_f30235878295a74b77747c5c2d018554 | p3@PAX2 |
| 3.27e-23 | FFCP PHASE1:Hg19::chr12:6484832..6484841,+#_cb378804c3d69df74f4b3103d9ad16f5 | p@chr12:6484832..6484841, + |
| 3.27e-23 | FFCP PHASE2:Hg19::chr12:6484832..6484841,+#_cb378804c3d69df74f4b3103d9ad16f5 | p@chr12:6484832..6484841, + |
| 3.29e-23 | FFCP PHASE1:Hg19::chr3:43532224..43532252,-#_060b5c65f8c9d6f0cda90a0c74d65fce | p@chr3:43532224..43532252, - |
| 3.29e-23 | FFCP PHASE2:Hg19::chr3:43532224..43532252,-#_060b5c65f8c9d6f0cda90a0c74d65fce | p@chr3:43532224..43532252, - |
