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We aim to provide a wide range of views for the FANTOM5 resources here. For now, we are focusing on phase1 freeze, and we are still updating this. | |||
The data sources: | |||
* CAGE peaks (only the robust set), their association with genes, and their expression based on RLE TPM. | |||
** https://fantom5-collaboration.gsc.riken.jp/webdav/home/kawaji/111220-DPI/hg19/tc.decompose_smoothing_merged.ctssMaxCounts11_ctssMaxTpm1.tpm.selected.clustername_update.osc.txt.gz | |||
** https://fantom5-collaboration.gsc.riken.jp/webdav/home/kawaji/111220-DPI/mm9/tc.decompose_smoothing_merged.ctssMaxCounts11_ctssMaxTpm1.tpm.selected.clustername_update.osc.txt.gz | |||
* Swissregulon motifs, and Motif Activity Response Analysis (MARA) | |||
** http://www.swissregulon.unibas.ch/ | |||
** https://fantom5-collaboration.gsc.riken.jp/webdav/home/mdehoon/MotifActivity/ | |||
* FF Ontology | |||
** https://fantom5-collaboration.gsc.riken.jp/files/data/shared/contrib/sample_ontology/FANTOM5v5/ | |||
<html> | <html> | ||
<img src="/resource_browser/Llogo.png" width=300> | <img src="/resource_browser/Llogo.png" width=300> | ||
</html> | </html> | ||
Revision as of 18:26, 29 February 2012
We aim to provide a wide range of views for the FANTOM5 resources here. For now, we are focusing on phase1 freeze, and we are still updating this.
The data sources:
- CAGE peaks (only the robust set), their association with genes, and their expression based on RLE TPM.
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/kawaji/111220-DPI/hg19/tc.decompose_smoothing_merged.ctssMaxCounts11_ctssMaxTpm1.tpm.selected.clustername_update.osc.txt.gz
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/kawaji/111220-DPI/mm9/tc.decompose_smoothing_merged.ctssMaxCounts11_ctssMaxTpm1.tpm.selected.clustername_update.osc.txt.gz
- Swissregulon motifs, and Motif Activity Response Analysis (MARA)
- FF Ontology
