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We aim to provide a wide range of views for the FANTOM5 resources here. For now, we are focusing on phase1 freeze, and we are still updating this. | We aim to provide a wide range of views for the FANTOM5 resources here. For now, we are focusing on phase1 freeze, and we are still updating this. | ||
The data sources | === The data sources === | ||
* CAGE peaks (only the robust set), their association with genes, and their expression based on RLE TPM. | * CAGE peaks (only the robust set), their association with genes, and their expression based on RLE TPM. | ||
** https://fantom5-collaboration.gsc.riken.jp/webdav/home/kawaji/111220-DPI/hg19/tc.decompose_smoothing_merged.ctssMaxCounts11_ctssMaxTpm1.tpm.selected.clustername_update.osc.txt.gz | ** https://fantom5-collaboration.gsc.riken.jp/webdav/home/kawaji/111220-DPI/hg19/tc.decompose_smoothing_merged.ctssMaxCounts11_ctssMaxTpm1.tpm.selected.clustername_update.osc.txt.gz | ||
Revision as of 18:27, 29 February 2012
We aim to provide a wide range of views for the FANTOM5 resources here. For now, we are focusing on phase1 freeze, and we are still updating this.
The data sources
- CAGE peaks (only the robust set), their association with genes, and their expression based on RLE TPM.
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/kawaji/111220-DPI/hg19/tc.decompose_smoothing_merged.ctssMaxCounts11_ctssMaxTpm1.tpm.selected.clustername_update.osc.txt.gz
- https://fantom5-collaboration.gsc.riken.jp/webdav/home/kawaji/111220-DPI/mm9/tc.decompose_smoothing_merged.ctssMaxCounts11_ctssMaxTpm1.tpm.selected.clustername_update.osc.txt.gz
- Swissregulon motifs, and Motif Activity Response Analysis (MARA)
- FF Ontology
