CL:0000138: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{CL
|id=CL:0000138
|name=chondrocyte
|namespace=cell
|def="Polymorphic cell that form cartilage." [MESH:A.11.329.171]
|xref=BTO:0000249;;FMA:66782
|is_a=CL:0000153;;CL:...") |
No edit summary |
||
| Line 2: | Line 2: | ||
|id=CL:0000138 | |id=CL:0000138 | ||
|name=chondrocyte | |name=chondrocyte | ||
|namespace= | |namespace=efo | ||
|def="Polymorphic cell that form cartilage." [MESH:A.11.329.171] | |def="Polymorphic cell that form cartilage." [MESH:A.11.329.171] | ||
|xref=BTO:0000249;;FMA:66782 | |xref=BTO:0000249;;FMA:66782 | ||
|is_a=CL:0000153;;CL:0000667 | |is_a=CL:0000153;;CL:0000667;;EFO:0000324 | ||
|synonym="cartilage cell" EXACT [] | |synonym="cartilage cell" EXACT [] | ||
|comment= | |comment= | ||
| Line 20: | Line 20: | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl | |||
|is_obsolete= | |||
|preceded_by= | |||
}} | }} | ||
Revision as of 17:36, 15 June 2012
| Name: | chondrocyte | ||
|---|---|---|---|
| Namespace: | efo | ||
| Definition: | "Polymorphic cell that form cartilage." [MESH:A.11.329.171] | ||
| Xrefs: |
| ||
| Synonyms: | "cartilage cell" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000153(GAG secreting cell),CL:0000667(collagen secreting cell),EFO:0000324(cell type) |
|---|---|
| develops_from: | CL:0000058(chondroblast) |
Children
| derives from: | FF:0000037 (human chondrocyte sample),FF:0101574 (chondrosarcoma cell line sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10700-109G7 (chondrosarcoma cell line:SW 1353)
- 10720-109I9
- 10767-110F2
- 11261-116G1 (Chondrocyte - de diff, donor1)
- 11262-116G2
- 11338-117F6 (Chondrocyte - de diff, donor2)
- 11339-117F7 (Chondrocyte - re diff, donor2)
- 11410-118E6 (Chondrocyte - de diff, donor3)
- 11411-118E7 (Chondrocyte - re diff, donor3)
Mouse (Mus musculus)
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10700-109G7 (chondrosarcoma cell line:SW 1353)
- 10720-109I9
- 10767-110F2
- 11261-116G1 (Chondrocyte - de diff, donor1)
- 11262-116G2
- 11338-117F6 (Chondrocyte - de diff, donor2)
- 11339-117F7 (Chondrocyte - re diff, donor2)
- 11410-118E6 (Chondrocyte - de diff, donor3)
- 11411-118E7 (Chondrocyte - re diff, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000138 (chondrocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.17e-105 | FFCP PHASE2:Hg19::chr7:150824026..150824027,-#_d3c7454e1ae041283ac7c3c5efe75943 | p@chr7:150824026..150824027, - |
| 5.17e-105 | FFCP PHASE1:Hg19::chr7:150824026..150824027,-#_d3c7454e1ae041283ac7c3c5efe75943 | p@chr7:150824026..150824027, - |
| 4.67e-75 | FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_20571246e28383207b9f7a8465cae8b0 | p@chr8:57359975..57359992, - |
| 4.67e-75 | FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_20571246e28383207b9f7a8465cae8b0 | p@chr8:57359975..57359992, - |
| 5.66e-75 | FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_fb23dc840c29f4c4e2def4d3f540c266 | p@chr8:57353982..57353991, - |
| 5.66e-75 | FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_fb23dc840c29f4c4e2def4d3f540c266 | p@chr8:57353982..57353991, - |
| 4.26e-74 | FFCP PHASE2:Hg19::chr16:66906996..66906997,-#_e5401f07cedf71aba93c2e2613a4e567 | p@chr16:66906996..66906997, - |
| 4.26e-74 | FFCP PHASE1:Hg19::chr16:66906996..66906997,-#_e5401f07cedf71aba93c2e2613a4e567 | p@chr16:66906996..66906997, - |
| 5.47e-74 | FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_5ae2297b4d230438fca10e2e7d7e83cf | p@chr8:57354278..57354286, + |
| 5.47e-74 | FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_5ae2297b4d230438fca10e2e7d7e83cf | p@chr8:57354278..57354286, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr12:57628728..57628739,-#_31363fec89dc856eb459c0329d11f0fb | p@chr12:57628728..57628739, - |
| 2.83e-66 | FFCP PHASE2:Hg19::chr8:37535618..37535621,+#_31363fec89dc856eb459c0329d11f0fb | p@chr8:37535618..37535621, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr8:37535618..37535621,+#_31363fec89dc856eb459c0329d11f0fb | p@chr8:37535618..37535621, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr21:40033882..40033887,-#_31363fec89dc856eb459c0329d11f0fb | p21@ERG |
| 2.83e-66 | FFCP PHASE1:Hg19::chr21:40033882..40033887,-#_31363fec89dc856eb459c0329d11f0fb | p21@ERG |
| 2.83e-66 | FFCP PHASE1:Hg19::chr12:57628728..57628739,-#_31363fec89dc856eb459c0329d11f0fb | p@chr12:57628728..57628739, - |
| 5.13e-66 | FFCP PHASE2:Hg19::chr15:89402148..89402159,+#_e57afda5837fc721011929b58fd5b76b | p6@ACAN |
| 5.13e-66 | FFCP PHASE1:Hg19::chr15:89402148..89402159,+#_e57afda5837fc721011929b58fd5b76b | p6@ACAN |
| 1.63e-59 | FFCP PHASE1:Hg19::chr12:57629315..57629334,-#_3b0a57fe4a2cf96f1d0d3281e1f525b6 | p@chr12:57629315..57629334, - |
| 1.63e-59 | FFCP PHASE2:Hg19::chr12:57629315..57629334,-#_3b0a57fe4a2cf96f1d0d3281e1f525b6 | p@chr12:57629315..57629334, - |
| 1.63e-59 | FFCP PHASE2:Hg19::chr15:89417758..89417770,+#_3b0a57fe4a2cf96f1d0d3281e1f525b6 | p@chr15:89417758..89417770, + |
| 1.63e-59 | FFCP PHASE1:Hg19::chr15:89417758..89417770,+#_3b0a57fe4a2cf96f1d0d3281e1f525b6 | p@chr15:89417758..89417770, + |
| 1.82e-59 | FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_8d7596e081d16dd8623b9cc0a67fd182 | p@chr8:57354143..57354152, + |
| 1.82e-59 | FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_8d7596e081d16dd8623b9cc0a67fd182 | p@chr8:57354143..57354152, + |
| 4.12e-59 | FFCP PHASE2:Hg19::chr15:89402048..89402061,+#_d2c655b8fb891487c871e9ac9702e494 | p8@ACAN |
| 4.12e-59 | FFCP PHASE1:Hg19::chr15:89402048..89402061,+#_d2c655b8fb891487c871e9ac9702e494 | p8@ACAN |
| 7.47e-59 | FFCP PHASE1:Hg19::chr12:54651599..54651610,-#_3cd6bb6f3687754a393baad9c05eb343 | p40@CBX5 |
| 7.47e-59 | FFCP PHASE2:Hg19::chr1:186277359..186277362,+#_3cd6bb6f3687754a393baad9c05eb343 | p@chr1:186277359..186277362, + |
| 7.47e-59 | FFCP PHASE1:Hg19::chr1:186277359..186277362,+#_3cd6bb6f3687754a393baad9c05eb343 | p@chr1:186277359..186277362, + |
| 7.47e-59 | FFCP PHASE2:Hg19::chr12:54651599..54651610,-#_3cd6bb6f3687754a393baad9c05eb343 | p40@CBX5 |
| 1.01e-58 | FFCP PHASE1:Hg19::chr1:186273262..186273282,+#_b90ac9c93249e59d43b9bd86686eefd3 | p@chr1:186273262..186273282, + |
| 1.01e-58 | FFCP PHASE2:Hg19::chr1:186273262..186273282,+#_b90ac9c93249e59d43b9bd86686eefd3 | p@chr1:186273262..186273282, + |
| 1.36e-58 | FFCP PHASE2:Hg19::chr21:39821025..39821046,-#_8b72d094d6bf5cf579d0bf260f13e273 | p9@ERG |
| 1.36e-58 | FFCP PHASE1:Hg19::chr21:39821025..39821046,-#_8b72d094d6bf5cf579d0bf260f13e273 | p9@ERG |
| 1.82e-58 | FFCP PHASE2:Hg19::chr8:57354262..57354270,+#_837ff2c1e01195f7a27cf2a8dea91578 | p@chr8:57354262..57354270, + |
| 1.82e-58 | FFCP PHASE1:Hg19::chr8:57354262..57354270,+#_837ff2c1e01195f7a27cf2a8dea91578 | p@chr8:57354262..57354270, + |
| 3.54e-53 | FFCP PHASE2:Hg19::chr8:57353888..57353898,-#_6e3838afe797f7cc14b7a0c7c6ec3006 | p@chr8:57353888..57353898, - |
| 3.54e-53 | FFCP PHASE1:Hg19::chr8:57353888..57353898,-#_6e3838afe797f7cc14b7a0c7c6ec3006 | p@chr8:57353888..57353898, - |
| 3.84e-50 | FFCP PHASE2:Hg19::chr1:186277186..186277192,+#_3aecd676cc0abc91d5d9b82460b56101 | p@chr1:186277186..186277192, + |
| 3.84e-50 | FFCP PHASE1:Hg19::chr1:186277186..186277192,+#_3aecd676cc0abc91d5d9b82460b56101 | p@chr1:186277186..186277192, + |
| 1.08e-49 | FFCP PHASE2:Hg19::chr15:89381951..89381962,+#_bfd3454c58989b8245f8c57250abe68e | p@chr15:89381951..89381962, + |
| 1.08e-49 | FFCP PHASE1:Hg19::chr15:89381951..89381962,+#_bfd3454c58989b8245f8c57250abe68e | p@chr15:89381951..89381962, + |
| 4.78e-49 | FFCP PHASE1:Hg19::chr12:57629234..57629249,-#_85b1166027ccaa6ecd182b122ba39054 | p@chr12:57629234..57629249, - |
| 4.78e-49 | FFCP PHASE2:Hg19::chr12:57629234..57629249,-#_85b1166027ccaa6ecd182b122ba39054 | p@chr12:57629234..57629249, - |
| 5.83e-49 | FFCP PHASE2:Hg19::chr1:203149716..203149729,-#_eb79300e864dbc19a178a2c61c3e22ad | p19@CHI3L1 |
| 5.83e-49 | FFCP PHASE1:Hg19::chr1:203149716..203149729,-#_eb79300e864dbc19a178a2c61c3e22ad | p19@CHI3L1 |
| 3.67e-47 | FFCP PHASE1:Hg19::chr6:112375516..112375536,+#_378d02b4b0f32bc3eb0ea9d222bdde90 | p2@WISP3 |
| 3.67e-47 | FFCP PHASE2:Hg19::chr6:112375516..112375536,+#_378d02b4b0f32bc3eb0ea9d222bdde90 | p2@WISP3 |
| 1.41e-45 | FFCP PHASE2:Hg19::chr1:203154508..203154518,-#_e0d5a3f2302cd98a59e59c8fe9dc5b33 | p20@CHI3L1 |
| 1.41e-45 | FFCP PHASE1:Hg19::chr1:203154508..203154518,-#_e0d5a3f2302cd98a59e59c8fe9dc5b33 | p20@CHI3L1 |
| 9.76e-45 | FFCP PHASE2:Hg19::chr1:186275455..186275462,+#_5d99b55c82d93d55040bcb29be810c5b | p@chr1:186275455..186275462, + |
| 9.76e-45 | FFCP PHASE1:Hg19::chr1:186275455..186275462,+#_5d99b55c82d93d55040bcb29be810c5b | p@chr1:186275455..186275462, + |
| 9.76e-45 | FFCP PHASE2:Hg19::chr7:45953092..45953099,+#_5d99b55c82d93d55040bcb29be810c5b | p@chr7:45953092..45953099, + |
| 9.76e-45 | FFCP PHASE1:Hg19::chr7:45953092..45953099,+#_5d99b55c82d93d55040bcb29be810c5b | p@chr7:45953092..45953099, + |
| 1.52e-44 | FFCP PHASE2:Hg19::chr17:40998185..40998200,+#_8915387aff8756b4b0bbd8626956daee | p@chr17:40998185..40998200, + |
| 1.52e-44 | FFCP PHASE1:Hg19::chr17:40998185..40998200,+#_8915387aff8756b4b0bbd8626956daee | p@chr17:40998185..40998200, + |
| 1.52e-44 | FFCP PHASE2:Hg19::chr17:40998201..40998206,+#_8915387aff8756b4b0bbd8626956daee | p@chr17:40998201..40998206, + |
| 1.52e-44 | FFCP PHASE1:Hg19::chr17:40998201..40998206,+#_8915387aff8756b4b0bbd8626956daee | p@chr17:40998201..40998206, + |
| 1.52e-44 | FFCP PHASE2:Hg19::chr1:186266030..186266037,+#_8915387aff8756b4b0bbd8626956daee | p6@PRG4 |
| 1.52e-44 | FFCP PHASE1:Hg19::chr1:186266030..186266037,+#_8915387aff8756b4b0bbd8626956daee | p6@PRG4 |
| 1.52e-44 | FFCP PHASE2:Hg19::chr16:69963162..69963192,+#_8915387aff8756b4b0bbd8626956daee | p@chr16:69963162..69963192, + |
| 1.52e-44 | FFCP PHASE2:Hg19::chr9:97563078..97563086,+#_8915387aff8756b4b0bbd8626956daee | p@chr9:97563078..97563086, + |
| 1.52e-44 | FFCP PHASE1:Hg19::chr16:69963162..69963192,+#_8915387aff8756b4b0bbd8626956daee | p@chr16:69963162..69963192, + |
| 1.52e-44 | FFCP PHASE1:Hg19::chr9:97563078..97563086,+#_8915387aff8756b4b0bbd8626956daee | p@chr9:97563078..97563086, + |
| 7.53e-44 | FFCP PHASE2:Hg19::chr1:203149741..203149762,-#_b7a3459c22d1a8eb664a043aadd486c0 | p14@CHI3L1 |
| 7.53e-44 | FFCP PHASE1:Hg19::chr1:203149741..203149762,-#_b7a3459c22d1a8eb664a043aadd486c0 | p14@CHI3L1 |
| 3.16e-43 | FFCP PHASE1:Hg19::chr15:89401833..89401842,+#_5a9687fcb1d62c36e245e0b8d57400cb | p10@ACAN |
| 3.16e-43 | FFCP PHASE2:Hg19::chr15:89401833..89401842,+#_5a9687fcb1d62c36e245e0b8d57400cb | p10@ACAN |
| 3.65e-43 | FFCP PHASE2:Hg19::chr7:45956964..45956971,+#_beac24c719a3f25e8abc0964c284aa48 | p@chr7:45956964..45956971, + |
| 3.65e-43 | FFCP PHASE2:Hg19::chrX:7077601..7077607,+#_beac24c719a3f25e8abc0964c284aa48 | p17@STS |
| 3.65e-43 | FFCP PHASE1:Hg19::chrX:7077601..7077607,+#_beac24c719a3f25e8abc0964c284aa48 | p17@STS |
| 3.65e-43 | FFCP PHASE1:Hg19::chr7:45956964..45956971,+#_beac24c719a3f25e8abc0964c284aa48 | p@chr7:45956964..45956971, + |
| 6.48e-43 | FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_f0d153d048c48459d8a2b3604ff70b72 | p@chr8:57354360..57354367, + |
| 6.48e-43 | FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_f0d153d048c48459d8a2b3604ff70b72 | p@chr8:57354360..57354367, + |
| 8.63e-43 | FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_11ec81d02df34f4aba08bb9904eef7db | p@chr8:57353804..57353821, - |
| 8.63e-43 | FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_11ec81d02df34f4aba08bb9904eef7db | p@chr8:57353804..57353821, - |
| 1.03e-41 | FFCP PHASE2:Hg19::chr1:203152908..203152924,-#_4fa2ef4a59e4d5d8a0a5a025521b7a5e | p@chr1:203152908..203152924, - |
| 1.03e-41 | FFCP PHASE1:Hg19::chr1:203152908..203152924,-#_4fa2ef4a59e4d5d8a0a5a025521b7a5e | p@chr1:203152908..203152924, - |
| 7.63e-41 | FFCP PHASE2:Hg19::chr9:97807545..97807558,+#_9ff16c7ab72d2b5f050a849397c55b13 | p@chr9:97807545..97807558, + |
| 7.63e-41 | FFCP PHASE1:Hg19::chr9:97807545..97807558,+#_9ff16c7ab72d2b5f050a849397c55b13 | p@chr9:97807545..97807558, + |
| 1.04e-40 | FFCP PHASE2:Hg19::chr8:57353745..57353754,-#_2a90dccc29b619a8ffee9bf0846de88d | p@chr8:57353745..57353754, - |
| 1.04e-40 | FFCP PHASE1:Hg19::chr8:57353745..57353754,-#_2a90dccc29b619a8ffee9bf0846de88d | p@chr8:57353745..57353754, - |
| 1.57e-40 | FFCP PHASE2:Hg19::chr1:203151964..203151973,-#_bb9142a009dea3bfc16497032b7ebbea | p21@CHI3L1 |
| 1.57e-40 | FFCP PHASE1:Hg19::chr1:203151964..203151973,-#_bb9142a009dea3bfc16497032b7ebbea | p21@CHI3L1 |
| 1.82e-39 | FFCP PHASE2:Hg19::chr1:203148919..203148937,-#_a0516bfa713d5946da68920f1645c176 | p16@CHI3L1 |
| 1.82e-39 | FFCP PHASE1:Hg19::chr1:203148919..203148937,-#_a0516bfa713d5946da68920f1645c176 | p16@CHI3L1 |
| 7.29e-39 | FFCP PHASE2:Hg19::chr7:45956988..45956995,+#_6c08d91e3f7246d0e4031fed0889063e | p@chr7:45956988..45956995, + |
| 7.29e-39 | FFCP PHASE1:Hg19::chr7:45956988..45956995,+#_6c08d91e3f7246d0e4031fed0889063e | p@chr7:45956988..45956995, + |
| 9.74e-39 | FFCP PHASE2:Hg19::chr7:45953320..45953329,+#_20ec2ec30e83887604742863732e2fa5 | p@chr7:45953320..45953329, + |
| 9.74e-39 | FFCP PHASE1:Hg19::chr7:45953320..45953329,+#_20ec2ec30e83887604742863732e2fa5 | p@chr7:45953320..45953329, + |
| 1.3e-38 | FFCP PHASE2:Hg19::chr3:176912032..176912061,-#_34988340a883bb4d9144985447fa9788 | p1@BC070375 |
| 1.3e-38 | FFCP PHASE1:Hg19::chr3:176912032..176912061,-#_34988340a883bb4d9144985447fa9788 | p1@BC070375 |
| 2.18e-38 | FFCP PHASE2:Hg19::chr21:40033695..40033712,-#_20513a8bbe703a63be4b854e7b3e1a4d | p6@ERG |
| 2.18e-38 | FFCP PHASE1:Hg19::chr21:40033695..40033712,-#_20513a8bbe703a63be4b854e7b3e1a4d | p6@ERG |
| 5.47e-38 | FFCP PHASE2:Hg19::chr8:57354275..57354292,-#_fea133fbb35a051a1b580c1baeed5ce9 | p@chr8:57354275..57354292, - |
| 5.47e-38 | FFCP PHASE1:Hg19::chr8:57354275..57354292,-#_fea133fbb35a051a1b580c1baeed5ce9 | p@chr8:57354275..57354292, - |
| 6.3e-38 | FFCP PHASE2:Hg19::chr1:186276499..186276506,+#_9290df1fb57a36382ca26ca1aa62e8f3 | p@chr1:186276499..186276506, + |
| 6.3e-38 | FFCP PHASE1:Hg19::chr1:186276499..186276506,+#_9290df1fb57a36382ca26ca1aa62e8f3 | p@chr1:186276499..186276506, + |
| 8.66e-38 | FFCP PHASE2:Hg19::chr1:203148495..203148505,-#_6c835623c9ee2d45e99ea3545a1da9a9 | p13@CHI3L1 |
| 8.66e-38 | FFCP PHASE1:Hg19::chr1:203148495..203148505,-#_6c835623c9ee2d45e99ea3545a1da9a9 | p13@CHI3L1 |
