CL:0000362: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{CL
|id=CL:0000362
|name=epidermal cell
|namespace=cell
|def="An epithelial cell of the integument (the outer layer of an organism)." [Flybase:dsj, MA:ma]
|xref=BTO:0001...") |
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|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |||
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Revision as of 17:37, 15 June 2012
| Name: | epidermal cell | ||
|---|---|---|---|
| Namespace: | cell | ||
| Definition: | "An epithelial cell of the integument (the outer layer of an organism)." [Flybase:dsj, MA:ma] | ||
| Xrefs: |
| ||
| Synonyms: |
"cell of epidermis" EXACT [FMA:62411] "epithelial cell of skin" NARROW [FMA:62411] | ||
| Alt_id: | CL:1000396 |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000076(squamous epithelial cell),CL:0002159(general ecto-epithelial cell) |
|---|---|
| part_of: | UBERON:0001003(skin epidermis) |
Children
| is a: | CL:0000312 (keratinocyte),CL:0002560 (inner root sheath cell),CL:0002561 (outer root sheath cell),CL:0002562 (hair germinal matrix cell),CL:1000448 (epithelial cell of sweat gland) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10843-111E6 (merkel cell carcinoma cell line:MKL-1)
- 10844-111E7 (merkel cell carcinoma cell line:MS-1)
- 11220-116B5 (Sebocyte, donor1)
- 11272-116H3 (Keratinocyte - epidermal, donor1)
- 11301-117B5 (Sebocyte, donor2)
- 11349-117G8 (Keratinocyte - epidermal, donor2)
- 11378-118B1 (Sebocyte, donor3)
- 11421-118F8 (Keratinocyte - epidermal, donor3)
- 11503-119F9
- 11504-119G1 (Hair Follicle Outer Root Sheath Cells, donor1)
... further results Mouse (Mus musculus)
- 10843-111E6 (merkel cell carcinoma cell line:MKL-1)
- 10844-111E7 (merkel cell carcinoma cell line:MS-1)
- 11220-116B5 (Sebocyte, donor1)
- 11272-116H3 (Keratinocyte - epidermal, donor1)
- 11301-117B5 (Sebocyte, donor2)
- 11349-117G8 (Keratinocyte - epidermal, donor2)
- 11378-118B1 (Sebocyte, donor3)
- 11421-118F8 (Keratinocyte - epidermal, donor3)
- 11503-119F9
- 11504-119G1 (Hair Follicle Outer Root Sheath Cells, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000362 (epidermal cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.42e-59 | FFCP PHASE1:Hg19::chr1:16090914..16090925,+#_7df4f2f1e28b892b0631d5d97c4dd0d1 | p22@FBLIM1 |
| 6.42e-59 | FFCP PHASE2:Hg19::chr1:16090914..16090925,+#_7df4f2f1e28b892b0631d5d97c4dd0d1 | p22@FBLIM1 |
| 7.82e-50 | FFCP PHASE2:Hg19::chr4:87768946..87768955,-#_08f4b0d25d011e221a1b989f0562a6c7 | p@chr4:87768946..87768955, - |
| 7.82e-50 | FFCP PHASE1:Hg19::chr4:87768946..87768955,-#_08f4b0d25d011e221a1b989f0562a6c7 | p@chr4:87768946..87768955, - |
| 9.25e-50 | FFCP PHASE2:Hg19::chrY:7671916..7671924,-#_eac0318e31ef49565c8b8cb1617a192a | p@chrY:7671916..7671924, - |
| 9.25e-50 | FFCP PHASE1:Hg19::chrY:7671916..7671924,-#_eac0318e31ef49565c8b8cb1617a192a | p@chrY:7671916..7671924, - |
| 9.75e-45 | FFCP PHASE1:Hg19::chr22:27043104..27043111,+#_c2dd08385246e4798bee9088fd694922 | p27@MIAT |
| 9.75e-45 | FFCP PHASE1:Hg19::chr11:79659013..79659021,-#_c2dd08385246e4798bee9088fd694922 | p@chr11:79659013..79659021, - |
| 9.75e-45 | FFCP PHASE1:Hg19::chr5:64369097..64369105,+#_c2dd08385246e4798bee9088fd694922 | p@chr5:64369097..64369105, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr15:46610951..46610964,+#_c2dd08385246e4798bee9088fd694922 | p@chr15:46610951..46610964, + |
| 9.75e-45 | FFCP PHASE2:Hg19::chr3:66452082..66452087,-#_c2dd08385246e4798bee9088fd694922 | p@chr3:66452082..66452087, - |
| 9.75e-45 | FFCP PHASE2:Hg19::chr4:6356121..6356152,-#_c2dd08385246e4798bee9088fd694922 | p@chr4:6356121..6356152, - |
| 9.75e-45 | FFCP PHASE1:Hg19::chr9:33719626..33719633,-#_c2dd08385246e4798bee9088fd694922 | p@chr9:33719626..33719633, - |
| 9.75e-45 | FFCP PHASE2:Hg19::chr6:112466463..112466468,+#_c2dd08385246e4798bee9088fd694922 | p@chr6:112466463..112466468, + |
| 9.75e-45 | FFCP PHASE2:Hg19::chr11:79659052..79659060,-#_c2dd08385246e4798bee9088fd694922 | p@chr11:79659052..79659060, - |
| 9.75e-45 | FFCP PHASE2:Hg19::chr19:39401676..39401683,-#_c2dd08385246e4798bee9088fd694922 | p@chr19:39401676..39401683, - |
| 9.75e-45 | FFCP PHASE2:Hg19::chr20:49727833..49727839,-#_c2dd08385246e4798bee9088fd694922 | p@chr20:49727833..49727839, - |
| 9.75e-45 | FFCP PHASE1:Hg19::chr11:79659052..79659060,-#_c2dd08385246e4798bee9088fd694922 | p@chr11:79659052..79659060, - |
| 9.75e-45 | FFCP PHASE2:Hg19::chr15:46610847..46610851,+#_c2dd08385246e4798bee9088fd694922 | p@chr15:46610847..46610851, + |
| 9.75e-45 | FFCP PHASE2:Hg19::chr22:27043104..27043111,+#_c2dd08385246e4798bee9088fd694922 | p27@MIAT |
| 9.75e-45 | FFCP PHASE2:Hg19::chr9:139089234..139089236,-#_c2dd08385246e4798bee9088fd694922 | p@chr9:139089234..139089236, - |
| 9.75e-45 | FFCP PHASE2:Hg19::chr5:64369097..64369105,+#_c2dd08385246e4798bee9088fd694922 | p@chr5:64369097..64369105, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr1:216595350..216595395,-#_c2dd08385246e4798bee9088fd694922 | p@chr1:216595350..216595395, - |
| 9.75e-45 | FFCP PHASE1:Hg19::chr1:242843433..242843446,-#_c2dd08385246e4798bee9088fd694922 | p@chr1:242843433..242843446, - |
| 9.75e-45 | FFCP PHASE1:Hg19::chr1:201288895..201288902,+#_c2dd08385246e4798bee9088fd694922 | p@chr1:201288895..201288902, + |
| 9.75e-45 | FFCP PHASE2:Hg19::chr15:46610897..46610904,+#_c2dd08385246e4798bee9088fd694922 | p@chr15:46610897..46610904, + |
| 9.75e-45 | FFCP PHASE2:Hg19::chr9:33719626..33719633,-#_c2dd08385246e4798bee9088fd694922 | p@chr9:33719626..33719633, - |
| 9.75e-45 | FFCP PHASE1:Hg19::chr1:40770344..40770353,-#_c2dd08385246e4798bee9088fd694922 | p29@COL9A2 |
| 9.75e-45 | FFCP PHASE1:Hg19::chr15:46610847..46610851,+#_c2dd08385246e4798bee9088fd694922 | p@chr15:46610847..46610851, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr1:216196797..216196801,-#_c2dd08385246e4798bee9088fd694922 | p@chr1:216196797..216196801, - |
| 9.75e-45 | FFCP PHASE2:Hg19::chr15:46610951..46610964,+#_c2dd08385246e4798bee9088fd694922 | p@chr15:46610951..46610964, + |
| 9.75e-45 | FFCP PHASE2:Hg19::chr1:216595350..216595395,-#_c2dd08385246e4798bee9088fd694922 | p@chr1:216595350..216595395, - |
| 9.75e-45 | FFCP PHASE1:Hg19::chr4:6356121..6356152,-#_c2dd08385246e4798bee9088fd694922 | p@chr4:6356121..6356152, - |
| 9.75e-45 | FFCP PHASE1:Hg19::chr19:39401676..39401683,-#_c2dd08385246e4798bee9088fd694922 | p@chr19:39401676..39401683, - |
| 9.75e-45 | FFCP PHASE2:Hg19::chr1:242843433..242843446,-#_c2dd08385246e4798bee9088fd694922 | p@chr1:242843433..242843446, - |
| 9.75e-45 | FFCP PHASE1:Hg19::chr20:49727833..49727839,-#_c2dd08385246e4798bee9088fd694922 | p@chr20:49727833..49727839, - |
| 9.75e-45 | FFCP PHASE2:Hg19::chr1:201288895..201288902,+#_c2dd08385246e4798bee9088fd694922 | p@chr1:201288895..201288902, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr3:66452082..66452087,-#_c2dd08385246e4798bee9088fd694922 | p@chr3:66452082..66452087, - |
| 9.75e-45 | FFCP PHASE1:Hg19::chr6:112466463..112466468,+#_c2dd08385246e4798bee9088fd694922 | p@chr6:112466463..112466468, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr15:46610897..46610904,+#_c2dd08385246e4798bee9088fd694922 | p@chr15:46610897..46610904, + |
| 9.75e-45 | FFCP PHASE2:Hg19::chr1:216196797..216196801,-#_c2dd08385246e4798bee9088fd694922 | p@chr1:216196797..216196801, - |
| 9.75e-45 | FFCP PHASE1:Hg19::chr9:139089234..139089236,-#_c2dd08385246e4798bee9088fd694922 | p@chr9:139089234..139089236, - |
| 9.75e-45 | FFCP PHASE2:Hg19::chr11:79659013..79659021,-#_c2dd08385246e4798bee9088fd694922 | p@chr11:79659013..79659021, - |
| 9.75e-45 | FFCP PHASE2:Hg19::chr1:40770344..40770353,-#_c2dd08385246e4798bee9088fd694922 | p29@COL9A2 |
| 4.93e-43 | FFCP PHASE2:Hg19::chr17:38120375..38120394,+#_c0e126aa6e7f37c48fbaf2ebe3268ad5 | p@chr17:38120375..38120394, + |
| 4.93e-43 | FFCP PHASE1:Hg19::chr17:38120375..38120394,+#_c0e126aa6e7f37c48fbaf2ebe3268ad5 | p@chr17:38120375..38120394, + |
| 3.32e-40 | FFCP PHASE1:Hg19::chr17:19702846..19702866,-#_781fa362c02c129d243174c97f9c22df | p@chr17:19702846..19702866, - |
| 3.32e-40 | FFCP PHASE2:Hg19::chr17:19702846..19702866,-#_781fa362c02c129d243174c97f9c22df | p@chr17:19702846..19702866, - |
| 6.49e-40 | FFCP PHASE1:Hg19::chr1:207038965..207038969,+#_8f0ff3b774a6633157857a1f4952edfc | p1@IL20 |
| 6.49e-40 | FFCP PHASE2:Hg19::chr1:207038965..207038969,+#_8f0ff3b774a6633157857a1f4952edfc | p1@IL20 |
| 3.83e-39 | FFCP PHASE2:Hg19::chr11:93754316..93754353,+#_bf0063333db47c6da6f15d270fa811f2 | p2@HEPHL1 |
| 3.83e-39 | FFCP PHASE1:Hg19::chr11:93754316..93754353,+#_bf0063333db47c6da6f15d270fa811f2 | p2@HEPHL1 |
| 3.69e-37 | FFCP PHASE1:Hg19::chr4:87770290..87770304,-#_42e88ad9af57a12de1efb51530485976 | p2@SLC10A6 |
| 3.69e-37 | FFCP PHASE2:Hg19::chr4:87770290..87770304,-#_42e88ad9af57a12de1efb51530485976 | p2@SLC10A6 |
| 2.3e-34 | FFCP PHASE2:Hg19::chr17:48611940..48611947,+#_dab9956a6c85a73618ac86097c3e21f5 | p5@EPN3 |
| 2.3e-34 | FFCP PHASE1:Hg19::chr17:48611940..48611947,+#_dab9956a6c85a73618ac86097c3e21f5 | p5@EPN3 |
| 3.34e-32 | FFCP PHASE2:Hg19::chr1:152783824..152783828,+#_6a8afaa9781d8d6d14430a7f39eb5879 | p@chr1:152783824..152783828, + |
| 3.34e-32 | FFCP PHASE1:Hg19::chr1:152783824..152783828,+#_6a8afaa9781d8d6d14430a7f39eb5879 | p@chr1:152783824..152783828, + |
| 3.93e-32 | FFCP PHASE1:Hg19::chr1:152815327..152815336,+#_b39a6bc98dc057214198db159a19661c | p1@LCE6A |
| 3.93e-32 | FFCP PHASE2:Hg19::chr1:152815327..152815336,+#_b39a6bc98dc057214198db159a19661c | p1@LCE6A |
| 6.9e-32 | FFCP PHASE2:Hg19::chr13:30259768..30259777,+#_b39efeea4dcf165db38b67b94bd6fdd3 | p@chr13:30259768..30259777, + |
| 6.9e-32 | FFCP PHASE1:Hg19::chr13:30259768..30259777,+#_b39efeea4dcf165db38b67b94bd6fdd3 | p@chr13:30259768..30259777, + |
| 6.12e-31 | FFCP PHASE2:Hg19::chr1:2359091..2359102,+#_4c9e50016b4055cbcd7e74838f9f1b39 | p@chr1:2359091..2359102, + |
| 6.12e-31 | FFCP PHASE1:Hg19::chr1:2359091..2359102,+#_4c9e50016b4055cbcd7e74838f9f1b39 | p@chr1:2359091..2359102, + |
| 9.44e-31 | FFCP PHASE1:Hg19::chr1:152798501..152798507,+#_0351d9ee4d5d3111c7c2a96248648a33 | p1@LCE1A |
| 9.44e-31 | FFCP PHASE2:Hg19::chr1:152798501..152798507,+#_0351d9ee4d5d3111c7c2a96248648a33 | p1@LCE1A |
| 1.65e-30 | FFCP PHASE2:Hg19::chr12:52844247..52844256,-#_cdeee7215a0f4468c8c304109ef1628c | p@chr12:52844247..52844256, - |
| 1.65e-30 | FFCP PHASE1:Hg19::chr12:52844247..52844256,-#_cdeee7215a0f4468c8c304109ef1628c | p@chr12:52844247..52844256, - |
| 1.68e-30 | FFCP PHASE2:Hg19::chr7:40855279..40855286,+#_414d9f28fa3f5ce0a8aec730c9313a12 | p@chr7:40855279..40855286, + |
| 1.68e-30 | FFCP PHASE1:Hg19::chr7:40855279..40855286,+#_414d9f28fa3f5ce0a8aec730c9313a12 | p@chr7:40855279..40855286, + |
| 2.66e-30 | FFCP PHASE2:Hg19::chr9:139096224..139096231,-#_89ef5a4bad6670dbc892bde43229bd3b | p@chr9:139096224..139096231, - |
| 2.66e-30 | FFCP PHASE2:Hg19::chr5:64369069..64369083,+#_89ef5a4bad6670dbc892bde43229bd3b | p@chr5:64369069..64369083, + |
| 2.66e-30 | FFCP PHASE1:Hg19::chr1:155048171..155048179,+#_89ef5a4bad6670dbc892bde43229bd3b | p@chr1:155048171..155048179, + |
| 2.66e-30 | FFCP PHASE1:Hg19::chr5:145722450..145722456,+#_89ef5a4bad6670dbc892bde43229bd3b | p@chr5:145722450..145722456, + |
| 2.66e-30 | FFCP PHASE2:Hg19::chr11:128634589..128634606,+#_89ef5a4bad6670dbc892bde43229bd3b | p14@FLI1 |
| 2.66e-30 | FFCP PHASE1:Hg19::chr5:64400723..64400730,-#_89ef5a4bad6670dbc892bde43229bd3b | p@chr5:64400723..64400730, - |
| 2.66e-30 | FFCP PHASE1:Hg19::chr22:35921483..35921490,-#_89ef5a4bad6670dbc892bde43229bd3b | p@chr22:35921483..35921490, - |
| 2.66e-30 | FFCP PHASE1:Hg19::chr1:155048200..155048207,+#_89ef5a4bad6670dbc892bde43229bd3b | p@chr1:155048200..155048207, + |
| 2.66e-30 | FFCP PHASE1:Hg19::chr9:33719660..33719671,-#_89ef5a4bad6670dbc892bde43229bd3b | p@chr9:33719660..33719671, - |
| 2.66e-30 | FFCP PHASE2:Hg19::chr12:65175253..65175283,-#_89ef5a4bad6670dbc892bde43229bd3b | p@chr12:65175253..65175283, - |
| 2.66e-30 | FFCP PHASE2:Hg19::chr5:64400723..64400730,-#_89ef5a4bad6670dbc892bde43229bd3b | p@chr5:64400723..64400730, - |
| 2.66e-30 | FFCP PHASE2:Hg19::chr1:155048171..155048179,+#_89ef5a4bad6670dbc892bde43229bd3b | p@chr1:155048171..155048179, + |
| 2.66e-30 | FFCP PHASE2:Hg19::chr16:53653257..53653264,-#_89ef5a4bad6670dbc892bde43229bd3b | p@chr16:53653257..53653264, - |
| 2.66e-30 | FFCP PHASE2:Hg19::chr5:145722450..145722456,+#_89ef5a4bad6670dbc892bde43229bd3b | p@chr5:145722450..145722456, + |
| 2.66e-30 | FFCP PHASE2:Hg19::chr22:35921483..35921490,-#_89ef5a4bad6670dbc892bde43229bd3b | p@chr22:35921483..35921490, - |
| 2.66e-30 | FFCP PHASE1:Hg19::chr9:139096224..139096231,-#_89ef5a4bad6670dbc892bde43229bd3b | p@chr9:139096224..139096231, - |
| 2.66e-30 | FFCP PHASE2:Hg19::chr1:155048200..155048207,+#_89ef5a4bad6670dbc892bde43229bd3b | p@chr1:155048200..155048207, + |
| 2.66e-30 | FFCP PHASE2:Hg19::chr9:33719660..33719671,-#_89ef5a4bad6670dbc892bde43229bd3b | p@chr9:33719660..33719671, - |
| 2.66e-30 | FFCP PHASE1:Hg19::chr12:65175253..65175283,-#_89ef5a4bad6670dbc892bde43229bd3b | p@chr12:65175253..65175283, - |
| 2.66e-30 | FFCP PHASE1:Hg19::chr11:128634589..128634606,+#_89ef5a4bad6670dbc892bde43229bd3b | p14@FLI1 |
| 2.66e-30 | FFCP PHASE1:Hg19::chr16:53653257..53653264,-#_89ef5a4bad6670dbc892bde43229bd3b | p@chr16:53653257..53653264, - |
| 2.66e-30 | FFCP PHASE1:Hg19::chr5:64369069..64369083,+#_89ef5a4bad6670dbc892bde43229bd3b | p@chr5:64369069..64369083, + |
| 3.09e-30 | FFCP PHASE2:Hg19::chr5:145724642..145724652,+#_01c44cab1e4be4d784692350c5334cab | p@chr5:145724642..145724652, + |
| 3.09e-30 | FFCP PHASE1:Hg19::chr20:49727891..49727898,-#_01c44cab1e4be4d784692350c5334cab | p@chr20:49727891..49727898, - |
| 3.09e-30 | FFCP PHASE1:Hg19::chr2:3152671..3152679,-#_01c44cab1e4be4d784692350c5334cab | p@chr2:3152671..3152679, - |
| 3.09e-30 | FFCP PHASE2:Hg19::chr1:216286476..216286479,-#_01c44cab1e4be4d784692350c5334cab | p@chr1:216286476..216286479, - |
| 3.09e-30 | FFCP PHASE2:Hg19::chr20:31116333..31116338,-#_01c44cab1e4be4d784692350c5334cab | p@chr20:31116333..31116338, - |
| 3.09e-30 | FFCP PHASE1:Hg19::chr5:14742023..14742037,-#_01c44cab1e4be4d784692350c5334cab | p@chr5:14742023..14742037, - |
| 3.09e-30 | FFCP PHASE1:Hg19::chr5:145724630..145724641,+#_01c44cab1e4be4d784692350c5334cab | p@chr5:145724630..145724641, + |
| 3.09e-30 | FFCP PHASE1:Hg19::chr11:31312513..31312524,-#_01c44cab1e4be4d784692350c5334cab | p@chr11:31312513..31312524, - |
