Personal tools

CL:0002253: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{CL |id=CL:0002253 |name=epithelial cell of large intestine |namespace=cell |def="An epithelial cell of the large intestine." [GOC:tfm] |xref=BTO:0004297;;FMA:256157 |i...")
 
No edit summary
Line 20: Line 20:
|located_in=
|located_in=
|part_of=UBERON:0000059
|part_of=UBERON:0000059
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|preceded_by=
}}
}}

Revision as of 17:40, 15 June 2012

Name:epithelial cell of large intestine
Namespace:cell
Definition:"An epithelial cell of the large intestine." [GOC:tfm]
Xrefs:
links:

BTO:0004297

FMA:256157
Synonyms: "epithelial cell of colon" RELATED []
Alt_id: CL:1000292
Created by:tmeehan
Creation date:2010-09-08T09:28:22Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0002563(intestinal epithelial cell)
part_of:UBERON:0000059(large intestine)



Children


is a:FF:0100797 (colonic cancer cell line)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002253 (epithelial cell of large intestine), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE1:Hg19::chr3:24797750..24797759,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr3:24797750..24797759, -
1.55e-98FFCP PHASE2:Hg19::chr7:87049573..87049608,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr7:87049573..87049608, -
1.55e-98FFCP PHASE2:Hg19::chr2:148148505..148148515,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr2:148148505..148148515, -
1.55e-98FFCP PHASE1:Hg19::chr14:76289395..76289406,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr14:76289395..76289406, +
1.55e-98FFCP PHASE2:Hg19::chr9:125898916..125898941,-#_ee6c42c2c71ddc1822d09b6018a62be6p14@STRBP
1.55e-98FFCP PHASE2:Hg19::chr8:128118744..128118753,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr8:128118744..128118753, -
1.55e-98FFCP PHASE2:Hg19::chr14:26793415..26793426,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr14:26793415..26793426, -
1.55e-98FFCP PHASE1:Hg19::chr3:140054665..140054678,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr3:140054665..140054678, -
1.55e-98FFCP PHASE2:Hg19::chr12:77730114..77730120,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr12:77730114..77730120, -
1.55e-98FFCP PHASE1:Hg19::chr8:127449395..127449424,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr8:127449395..127449424, +
1.55e-98FFCP PHASE1:Hg19::chr8:128418747..128418756,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr8:128418747..128418756, -
1.55e-98FFCP PHASE1:Hg19::chr12:77730114..77730120,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr12:77730114..77730120, -
1.55e-98FFCP PHASE2:Hg19::chr3:185823573..185823578,-#_ee6c42c2c71ddc1822d09b6018a62be6p26@ETV5
1.55e-98FFCP PHASE2:Hg19::chr6:8446968..8446983,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr6:8446968..8446983, +
1.55e-98FFCP PHASE2:Hg19::chr12:68155058..68155064,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr12:68155058..68155064, -
1.55e-98FFCP PHASE1:Hg19::chr2:163302793..163302800,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr2:163302793..163302800, -
1.55e-98FFCP PHASE1:Hg19::chr1:93128346..93128356,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr1:93128346..93128356, -
1.55e-98FFCP PHASE1:Hg19::chr13:46093198..46093203,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr13:46093198..46093203, +
1.55e-98FFCP PHASE1:Hg19::chr21:37143915..37143924,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr21:37143915..37143924, -
1.55e-98FFCP PHASE2:Hg19::chrX:138909080..138909093,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chrX:138909080..138909093, -
1.55e-98FFCP PHASE1:Hg19::chr12:68155058..68155064,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr12:68155058..68155064, -
1.55e-98FFCP PHASE2:Hg19::chr8:55331615..55331618,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr8:55331615..55331618, +
1.55e-98FFCP PHASE2:Hg19::chr8:127440115..127440120,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr8:127440115..127440120, +
1.55e-98FFCP PHASE1:Hg19::chr4:71222797..71222807,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr4:71222797..71222807, +
1.55e-98FFCP PHASE2:Hg19::chr2:127711416..127711419,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr2:127711416..127711419, +
1.55e-98FFCP PHASE2:Hg19::chr1:19522690..19522704,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr1:19522690..19522704, -
1.55e-98FFCP PHASE2:Hg19::chr4:157174324..157174332,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr4:157174324..157174332, +
1.55e-98FFCP PHASE2:Hg19::chr7:97958802..97958804,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr7:97958802..97958804, -
1.55e-98FFCP PHASE2:Hg19::chr3:148164659..148164667,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr3:148164659..148164667, -
1.55e-98FFCP PHASE2:Hg19::chr8:128415944..128415958,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr8:128415944..128415958, +
1.55e-98FFCP PHASE2:Hg19::chr1:163338283..163338286,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr1:163338283..163338286, +
1.55e-98FFCP PHASE2:Hg19::chr16:19661585..19661596,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr16:19661585..19661596, +
1.55e-98FFCP PHASE2:Hg19::chr14:22850283..22850310,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr14:22850283..22850310, -
1.55e-98FFCP PHASE1:Hg19::chr4:169559850..169559856,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr4:169559850..169559856, -
1.55e-98FFCP PHASE1:Hg19::chr10:24726466..24726472,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr10:24726466..24726472, +
1.55e-98FFCP PHASE2:Hg19::chr13:28541442..28541451,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr13:28541442..28541451, -
1.55e-98FFCP PHASE2:Hg19::chr1:55404829..55404833,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr1:55404829..55404833, -
1.55e-98FFCP PHASE1:Hg19::chr4:157174075..157174084,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr4:157174075..157174084, +
1.55e-98FFCP PHASE2:Hg19::chr6:8389389..8389429,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr6:8389389..8389429, -
1.55e-98FFCP PHASE1:Hg19::chr7:87232440..87232448,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr7:87232440..87232448, -
1.55e-98FFCP PHASE1:Hg19::chr2:159306961..159306975,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr2:159306961..159306975, +
1.55e-98FFCP PHASE1:Hg19::chr1:78621016..78621042,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr1:78621016..78621042, +
1.55e-98FFCP PHASE1:Hg19::chr8:99425711..99425716,-#_ee6c42c2c71ddc1822d09b6018a62be6p1@ENST00000518956
1.55e-98FFCP PHASE1:Hg19::chr5:57619538..57619575,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr5:57619538..57619575, -
1.55e-98FFCP PHASE2:Hg19::chr8:107667666..107667673,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr8:107667666..107667673, +
1.55e-98FFCP PHASE2:Hg19::chr16:53671764..53671771,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr16:53671764..53671771, -
1.55e-98FFCP PHASE1:Hg19::chr15:60749901..60749904,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr15:60749901..60749904, -
1.55e-98FFCP PHASE2:Hg19::chr8:128419359..128419367,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr8:128419359..128419367, -
1.55e-98FFCP PHASE2:Hg19::chr3:66354424..66354472,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr3:66354424..66354472, +
1.55e-98FFCP PHASE1:Hg19::chr16:55344418..55344442,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr16:55344418..55344442, +
1.55e-98FFCP PHASE2:Hg19::chr7:141499716..141499722,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr7:141499716..141499722, +
1.55e-98FFCP PHASE2:Hg19::chr6:104674708..104674749,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr6:104674708..104674749, -
1.55e-98FFCP PHASE1:Hg19::chr8:127817393..127817400,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr8:127817393..127817400, +
1.55e-98FFCP PHASE1:Hg19::chr3:24797832..24797838,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr3:24797832..24797838, -
1.55e-98FFCP PHASE2:Hg19::chr7:87232406..87232409,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr7:87232406..87232409, -
1.55e-98FFCP PHASE2:Hg19::chr3:139373728..139373733,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr3:139373728..139373733, +
1.55e-98FFCP PHASE2:Hg19::chr6:372660..372670,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr6:372660..372670, -
1.55e-98FFCP PHASE1:Hg19::chr1:198324742..198324745,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr1:198324742..198324745, +
1.55e-98FFCP PHASE1:Hg19::chr13:28541425..28541439,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr13:28541425..28541439, -
1.55e-98FFCP PHASE2:Hg19::chr8:128259602..128259609,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr8:128259602..128259609, -
1.55e-98FFCP PHASE2:Hg19::chr2:205036975..205037009,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr2:205036975..205037009, -
1.55e-98FFCP PHASE1:Hg19::chr3:140054724..140054735,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr3:140054724..140054735, -
1.55e-98FFCP PHASE2:Hg19::chr5:71987749..71987774,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr5:71987749..71987774, -
1.55e-98FFCP PHASE2:Hg19::chr4:157174023..157174034,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr4:157174023..157174034, +
1.55e-98FFCP PHASE2:Hg19::chr9:104610923..104610939,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr9:104610923..104610939, -
1.55e-98FFCP PHASE2:Hg19::chr8:127681013..127681042,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr8:127681013..127681042, -
1.55e-98FFCP PHASE1:Hg19::chr16:19661585..19661596,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr16:19661585..19661596, +
1.55e-98FFCP PHASE1:Hg19::chr13:48703799..48703838,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr13:48703799..48703838, -
1.55e-98FFCP PHASE2:Hg19::chr15:45950558..45950561,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr15:45950558..45950561, +
1.55e-98FFCP PHASE1:Hg19::chr14:26793415..26793426,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr14:26793415..26793426, -
1.55e-98FFCP PHASE2:Hg19::chr18:28720966..28720970,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr18:28720966..28720970, +
1.55e-98FFCP PHASE2:Hg19::chr10:2328652..2328660,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr10:2328652..2328660, +
1.55e-98FFCP PHASE2:Hg19::chr8:127445866..127445873,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr8:127445866..127445873, +
1.55e-98FFCP PHASE2:Hg19::chr2:127711472..127711475,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr2:127711472..127711475, +
1.55e-98FFCP PHASE1:Hg19::chr6:8389087..8389116,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr6:8389087..8389116, -
1.55e-98FFCP PHASE2:Hg19::chr3:148164872..148164919,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr3:148164872..148164919, -
1.55e-98FFCP PHASE2:Hg19::chr2:163302780..163302789,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr2:163302780..163302789, -
1.55e-98FFCP PHASE1:Hg19::chr7:30499737..30499761,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr7:30499737..30499761, +
1.55e-98FFCP PHASE1:Hg19::chr3:156822661..156822696,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr3:156822661..156822696, -
1.55e-98FFCP PHASE1:Hg19::chr8:127568784..127568794,+#_ee6c42c2c71ddc1822d09b6018a62be6p6@ENST00000524320
1.55e-98FFCP PHASE2:Hg19::chr16:19661615..19661621,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr16:19661615..19661621, +
1.55e-98FFCP PHASE2:Hg19::chr13:32790605..32790619,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr13:32790605..32790619, +
1.55e-98FFCP PHASE1:Hg19::chr8:128691603..128691614,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr8:128691603..128691614, -
1.55e-98FFCP PHASE2:Hg19::chrX:42162203..42162241,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chrX:42162203..42162241, +
1.55e-98FFCP PHASE1:Hg19::chr8:127438794..127438800,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr8:127438794..127438800, +
1.55e-98FFCP PHASE1:Hg19::chr9:125898916..125898941,-#_ee6c42c2c71ddc1822d09b6018a62be6p14@STRBP
1.55e-98FFCP PHASE2:Hg19::chr1:219739282..219739288,-#_ee6c42c2c71ddc1822d09b6018a62be6p@chr1:219739282..219739288, -
1.55e-98FFCP PHASE1:Hg19::chr8:128415915..128415922,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr8:128415915..128415922, +
1.55e-98FFCP PHASE1:Hg19::chr6:8446968..8446983,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr6:8446968..8446983, +
1.55e-98FFCP PHASE2:Hg19::chr18:39550015..39550034,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr18:39550015..39550034, +
1.55e-98FFCP PHASE1:Hg19::chr4:157174108..157174136,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr4:157174108..157174136, +
1.55e-98FFCP PHASE1:Hg19::chr7:89797154..89797172,+#_ee6c42c2c71ddc1822d09b6018a62be6p9@STEAP2
1.55e-98FFCP PHASE2:Hg19::chr8:128807259..128807281,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr8:128807259..128807281, +
1.55e-98FFCP PHASE1:Hg19::chr3:185823573..185823578,-#_ee6c42c2c71ddc1822d09b6018a62be6p26@ETV5
1.55e-98FFCP PHASE2:Hg19::chr8:39792182..39792188,+#_ee6c42c2c71ddc1822d09b6018a62be6p14@IDO2
1.55e-98FFCP PHASE2:Hg19::chr13:54830821..54830841,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr13:54830821..54830841, +
1.55e-98FFCP PHASE1:Hg19::chr9:98505341..98505348,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr9:98505341..98505348, +
1.55e-98FFCP PHASE2:Hg19::chr6:5491056..5491061,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr6:5491056..5491061, +
1.55e-98FFCP PHASE1:Hg19::chr8:55331615..55331618,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr8:55331615..55331618, +
1.55e-98FFCP PHASE1:Hg19::chr2:19707156..19707203,+#_ee6c42c2c71ddc1822d09b6018a62be6p@chr2:19707156..19707203, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0002253&oldid=1833793"