CL:0002368: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{CL
|id=CL:0002368
|name=respiratory epithelial cell
|namespace=cell
|def="An endo-epithelial cell of the respiratory tract." [GOC:tfm]
|xref=BTO:0004533
|is_a=CL:00020...") |
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|id=CL:0002368 | |id=CL:0002368 | ||
|name=respiratory epithelial cell | |name=respiratory epithelial cell | ||
|namespace= | |namespace=efo | ||
|def="An endo-epithelial cell of the respiratory tract." [GOC:tfm] | |def="An endo-epithelial cell of the respiratory tract." [GOC:tfm] | ||
|xref=BTO:0004533 | |xref=BTO:0004533 | ||
|is_a=CL:0002076 | |is_a=CL:0000066;;CL:0002076 | ||
|synonym="airway epithelial cell" EXACT [] | |synonym="airway epithelial cell" EXACT [] | ||
|comment= | |comment= | ||
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|located_in= | |located_in= | ||
|part_of=UBERON:0000065 | |part_of=UBERON:0000065 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl | |||
|is_obsolete= | |||
|preceded_by= | |||
}} | }} | ||
Revision as of 17:40, 15 June 2012
| Name: | respiratory epithelial cell | ||
|---|---|---|---|
| Namespace: | efo | ||
| Definition: | "An endo-epithelial cell of the respiratory tract." [GOC:tfm] | ||
| Xrefs: |
| ||
| Synonyms: | "airway epithelial cell" EXACT [] | ||
| Created by: | tmeehan | ||
| Creation date: | 2010-09-23T04:38:49Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000066(epithelial cell),CL:0002076(endo-epithelial cell) |
|---|---|
| part_of: | UBERON:0000065(respiratory tract) |
Children
| is a: | CL:0002632 (epithelial cell of lower respiratory tract) |
|---|---|
| derives from: | FF:0000166 (human small airway epithelial cell sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10708-109H6 (alveolar cell carcinoma cell line:SW 1573)
- 10709-109H7 (bronchioalveolar carcinoma cell line:NCI-H358)
- 10715-109I4 (bronchioalveolar carcinoma cell line:NCI-H650)
- 11256-116F5 (Small Airway Epithelial Cells, donor1)
- 11292-117A5 (Tracheal Epithelial Cells, donor1)
- 11334-117F2 (Small Airway Epithelial Cells, donor2)
- 11369-118A1 (Tracheal Epithelial Cells, donor2)
- 11406-118E2 (Small Airway Epithelial Cells, donor3)
- 11441-118I1 (Tracheal Epithelial Cells, donor3)
- 11453-119A4 (Bronchial Epithelial Cell, donor4)
... further results Mouse (Mus musculus)
- 10708-109H6 (alveolar cell carcinoma cell line:SW 1573)
- 10709-109H7 (bronchioalveolar carcinoma cell line:NCI-H358)
- 10715-109I4 (bronchioalveolar carcinoma cell line:NCI-H650)
- 11256-116F5 (Small Airway Epithelial Cells, donor1)
- 11292-117A5 (Tracheal Epithelial Cells, donor1)
- 11334-117F2 (Small Airway Epithelial Cells, donor2)
- 11369-118A1 (Tracheal Epithelial Cells, donor2)
- 11406-118E2 (Small Airway Epithelial Cells, donor3)
- 11441-118I1 (Tracheal Epithelial Cells, donor3)
- 11453-119A4 (Bronchial Epithelial Cell, donor4)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002368 (respiratory epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:100006864..100006873,+#_eae8d5b39e216513cb903472270bde9e | p@chr11:100006864..100006873, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:110941233..110941240,+#_eae8d5b39e216513cb903472270bde9e | p@chr9:110941233..110941240, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr3:89487103..89487111,-#_eae8d5b39e216513cb903472270bde9e | p@chr3:89487103..89487111, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:4165247..4165267,+#_eae8d5b39e216513cb903472270bde9e | p@chr11:4165247..4165267, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr5:91198876..91198885,+#_eae8d5b39e216513cb903472270bde9e | p@chr5:91198876..91198885, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr4:88696177..88696184,+#_eae8d5b39e216513cb903472270bde9e | p2@Gm12603 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr1:108303887..108303893,+#_eae8d5b39e216513cb903472270bde9e | p@chr1:108303887..108303893, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:164393992..164394012,-#_eae8d5b39e216513cb903472270bde9e | p@chr2:164393992..164394012, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr1:151954385..151954387,+#_eae8d5b39e216513cb903472270bde9e | p@chr1:151954385..151954387, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:4165247..4165267,+#_eae8d5b39e216513cb903472270bde9e | p@chr11:4165247..4165267, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:115644652..115644657,-#_eae8d5b39e216513cb903472270bde9e | p@chr13:115644652..115644657, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr17:25885558..25885567,+#_eae8d5b39e216513cb903472270bde9e | p@chr17:25885558..25885567, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr6:147205603..147205610,+#_eae8d5b39e216513cb903472270bde9e | p@chr6:147205603..147205610, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:110941246..110941254,+#_eae8d5b39e216513cb903472270bde9e | p@chr9:110941246..110941254, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:86461733..86461747,-#_eae8d5b39e216513cb903472270bde9e | p@chr11:86461733..86461747, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr5:91199084..91199088,-#_eae8d5b39e216513cb903472270bde9e | p@chr5:91199084..91199088, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr16:32641594..32641601,+#_eae8d5b39e216513cb903472270bde9e | p@chr16:32641594..32641601, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:164389604..164389615,+#_eae8d5b39e216513cb903472270bde9e | p@chr2:164389604..164389615, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr4:88696144..88696152,+#_eae8d5b39e216513cb903472270bde9e | p3@Gm12603 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:115722413..115722430,+#_eae8d5b39e216513cb903472270bde9e | p@chr13:115722413..115722430, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr4:88563185..88563192,-#_eae8d5b39e216513cb903472270bde9e | p@chr4:88563185..88563192, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr5:135422125..135422141,-#_eae8d5b39e216513cb903472270bde9e | p@chr5:135422125..135422141, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr6:147205677..147205683,+#_eae8d5b39e216513cb903472270bde9e | p@chr6:147205677..147205683, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:72401408..72401416,-#_eae8d5b39e216513cb903472270bde9e | p@chr13:72401408..72401416, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr1:151954385..151954387,+#_eae8d5b39e216513cb903472270bde9e | p@chr1:151954385..151954387, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:164393992..164394012,-#_eae8d5b39e216513cb903472270bde9e | p@chr2:164393992..164394012, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:100006864..100006873,+#_eae8d5b39e216513cb903472270bde9e | p@chr11:100006864..100006873, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr1:108303887..108303893,+#_eae8d5b39e216513cb903472270bde9e | p@chr1:108303887..108303893, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr5:135420996..135421000,+#_eae8d5b39e216513cb903472270bde9e | p@chr5:135420996..135421000, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr4:88696177..88696184,+#_eae8d5b39e216513cb903472270bde9e | p2@Gm12603 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr15:101258041..101258052,+#_eae8d5b39e216513cb903472270bde9e | p@chr15:101258041..101258052, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:96608719..96608730,-#_eae8d5b39e216513cb903472270bde9e | p1@ENSMUST00000170876, p1@uc011ydj.1 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr12:17549752..17549763,+#_eae8d5b39e216513cb903472270bde9e | p@chr12:17549752..17549763, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr6:147205603..147205610,+#_eae8d5b39e216513cb903472270bde9e | p@chr6:147205603..147205610, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:60538178..60538182,-#_eae8d5b39e216513cb903472270bde9e | p@chr2:60538178..60538182, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr5:91198876..91198885,+#_eae8d5b39e216513cb903472270bde9e | p@chr5:91198876..91198885, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr17:25885558..25885567,+#_eae8d5b39e216513cb903472270bde9e | p@chr17:25885558..25885567, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:115722413..115722430,+#_eae8d5b39e216513cb903472270bde9e | p@chr13:115722413..115722430, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr16:32641594..32641601,+#_eae8d5b39e216513cb903472270bde9e | p@chr16:32641594..32641601, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr4:88563185..88563192,-#_eae8d5b39e216513cb903472270bde9e | p@chr4:88563185..88563192, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:110941233..110941240,+#_eae8d5b39e216513cb903472270bde9e | p@chr9:110941233..110941240, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr5:135420996..135421000,+#_eae8d5b39e216513cb903472270bde9e | p@chr5:135420996..135421000, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr6:147338308..147338339,-#_eae8d5b39e216513cb903472270bde9e | p@chr6:147338308..147338339, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:96608719..96608730,-#_eae8d5b39e216513cb903472270bde9e | p1@ENSMUST00000170876, p1@uc011ydj.1 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr12:17549752..17549763,+#_eae8d5b39e216513cb903472270bde9e | p@chr12:17549752..17549763, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr5:135422125..135422141,-#_eae8d5b39e216513cb903472270bde9e | p@chr5:135422125..135422141, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr3:89487103..89487111,-#_eae8d5b39e216513cb903472270bde9e | p@chr3:89487103..89487111, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr6:147205677..147205683,+#_eae8d5b39e216513cb903472270bde9e | p@chr6:147205677..147205683, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr4:88696144..88696152,+#_eae8d5b39e216513cb903472270bde9e | p3@Gm12603 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr5:91199084..91199088,-#_eae8d5b39e216513cb903472270bde9e | p@chr5:91199084..91199088, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr6:147338308..147338339,-#_eae8d5b39e216513cb903472270bde9e | p@chr6:147338308..147338339, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:86461733..86461747,-#_eae8d5b39e216513cb903472270bde9e | p@chr11:86461733..86461747, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:110941246..110941254,+#_eae8d5b39e216513cb903472270bde9e | p@chr9:110941246..110941254, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:164389604..164389615,+#_eae8d5b39e216513cb903472270bde9e | p@chr2:164389604..164389615, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:60538178..60538182,-#_eae8d5b39e216513cb903472270bde9e | p@chr2:60538178..60538182, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:115644652..115644657,-#_eae8d5b39e216513cb903472270bde9e | p@chr13:115644652..115644657, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr15:101258041..101258052,+#_eae8d5b39e216513cb903472270bde9e | p@chr15:101258041..101258052, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:72401408..72401416,-#_eae8d5b39e216513cb903472270bde9e | p@chr13:72401408..72401416, - |
| 1.22e-77 | FFCP PHASE2:Hg19::chr7:135018332..135018336,+#_b6bde569fc0028528417cd84339ba5b9 | p@chr7:135018332..135018336, + |
| 1.22e-77 | FFCP PHASE1:Hg19::chr7:135018332..135018336,+#_b6bde569fc0028528417cd84339ba5b9 | p@chr7:135018332..135018336, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr2:144564146..144564166,+#_f7ff4388e96665d4a100aee0bbe40e1b | p3@Dtd1 |
| 1.33e-65 | FFCP PHASE1:Mm9::chr3:90392458..90392472,+#_f7ff4388e96665d4a100aee0bbe40e1b | p@chr3:90392458..90392472, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr2:144564146..144564166,+#_f7ff4388e96665d4a100aee0bbe40e1b | p3@Dtd1 |
| 1.33e-65 | FFCP PHASE1:Mm9::chrX:20383628..20383635,+#_f7ff4388e96665d4a100aee0bbe40e1b | p@chrX:20383628..20383635, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr3:90392458..90392472,+#_f7ff4388e96665d4a100aee0bbe40e1b | p@chr3:90392458..90392472, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr6:147212620..147212625,+#_f7ff4388e96665d4a100aee0bbe40e1b | p@chr6:147212620..147212625, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr19:47939269..47939279,-#_f7ff4388e96665d4a100aee0bbe40e1b | p@chr19:47939269..47939279, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr14:31386795..31386797,-#_f7ff4388e96665d4a100aee0bbe40e1b | p@chr14:31386795..31386797, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr6:147212620..147212625,+#_f7ff4388e96665d4a100aee0bbe40e1b | p@chr6:147212620..147212625, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr3:121437538..121437546,+#_f7ff4388e96665d4a100aee0bbe40e1b | p@chr3:121437538..121437546, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr3:121437538..121437546,+#_f7ff4388e96665d4a100aee0bbe40e1b | p@chr3:121437538..121437546, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr19:47932377..47932386,-#_f7ff4388e96665d4a100aee0bbe40e1b | p@chr19:47932377..47932386, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr11:100002128..100002131,+#_f7ff4388e96665d4a100aee0bbe40e1b | p@chr11:100002128..100002131, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr19:47932377..47932386,-#_f7ff4388e96665d4a100aee0bbe40e1b | p@chr19:47932377..47932386, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr11:29642912..29642916,-#_f7ff4388e96665d4a100aee0bbe40e1b | p@chr11:29642912..29642916, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chrX:20383628..20383635,+#_f7ff4388e96665d4a100aee0bbe40e1b | p@chrX:20383628..20383635, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr11:29642912..29642916,-#_f7ff4388e96665d4a100aee0bbe40e1b | p@chr11:29642912..29642916, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr14:31386795..31386797,-#_f7ff4388e96665d4a100aee0bbe40e1b | p@chr14:31386795..31386797, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr3:121437587..121437593,+#_f7ff4388e96665d4a100aee0bbe40e1b | p@chr3:121437587..121437593, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr19:47939269..47939279,-#_f7ff4388e96665d4a100aee0bbe40e1b | p@chr19:47939269..47939279, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr3:121437587..121437593,+#_f7ff4388e96665d4a100aee0bbe40e1b | p@chr3:121437587..121437593, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr14:34905716..34905718,+#_f7ff4388e96665d4a100aee0bbe40e1b | p@chr14:34905716..34905718, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr11:4164303..4164316,+#_f7ff4388e96665d4a100aee0bbe40e1b | p@chr11:4164303..4164316, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr14:34905716..34905718,+#_f7ff4388e96665d4a100aee0bbe40e1b | p@chr14:34905716..34905718, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr11:4164303..4164316,+#_f7ff4388e96665d4a100aee0bbe40e1b | p@chr11:4164303..4164316, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr11:100002128..100002131,+#_f7ff4388e96665d4a100aee0bbe40e1b | p@chr11:100002128..100002131, + |
| 6.04e-65 | FFCP PHASE2:Mm9::chr1:90456476..90456498,+#_29df9c7049557814587cf68aaa0bc5cb | p@chr1:90456476..90456498, + |
| 6.04e-65 | FFCP PHASE1:Mm9::chr17:25888467..25888513,-#_29df9c7049557814587cf68aaa0bc5cb | p@chr17:25888467..25888513, - |
| 6.04e-65 | FFCP PHASE1:Mm9::chr1:90456476..90456498,+#_29df9c7049557814587cf68aaa0bc5cb | p@chr1:90456476..90456498, + |
| 6.04e-65 | FFCP PHASE2:Mm9::chr15:38385124..38385138,+#_29df9c7049557814587cf68aaa0bc5cb | p@chr15:38385124..38385138, + |
| 6.04e-65 | FFCP PHASE2:Mm9::chr19:47928736..47928764,+#_29df9c7049557814587cf68aaa0bc5cb | p@chr19:47928736..47928764, + |
| 6.04e-65 | FFCP PHASE2:Mm9::chr17:25888467..25888513,-#_29df9c7049557814587cf68aaa0bc5cb | p@chr17:25888467..25888513, - |
| 6.04e-65 | FFCP PHASE1:Mm9::chr15:38385124..38385138,+#_29df9c7049557814587cf68aaa0bc5cb | p@chr15:38385124..38385138, + |
| 6.04e-65 | FFCP PHASE1:Mm9::chr19:47928736..47928764,+#_29df9c7049557814587cf68aaa0bc5cb | p@chr19:47928736..47928764, + |
| 4.82e-64 | FFCP PHASE2:Hg19::chr6:83075367..83075383,-#_3175e2945737ba085643bb27dcb86800 | p@chr6:83075367..83075383, - |
| 4.82e-64 | FFCP PHASE1:Hg19::chr6:83075367..83075383,-#_3175e2945737ba085643bb27dcb86800 | p@chr6:83075367..83075383, - |
| 8.96e-61 | FFCP PHASE2:Hg19::chr13:61507880..61507904,-#_c1e1aea180b472ef12961fd8a6e8a2d5 | p@chr13:61507880..61507904, - |
| 8.96e-61 | FFCP PHASE1:Hg19::chr13:61507880..61507904,-#_c1e1aea180b472ef12961fd8a6e8a2d5 | p@chr13:61507880..61507904, - |
| 3.1e-54 | FFCP PHASE2:Hg19::chr3:189632708..189632721,-#_d832c3a210adb828246f53df581dce39 | p@chr3:189632708..189632721, - |
| 3.1e-54 | FFCP PHASE1:Hg19::chr3:189632708..189632721,-#_d832c3a210adb828246f53df581dce39 | p@chr3:189632708..189632721, - |
